Wall clock time and date at job start Tue Mar 31 2020 07:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.78005 * 2 1 4 4 C 1.55153 * 110.71868 * 236.75961 * 2 1 3 5 5 C 1.55131 * 101.48604 * 205.96981 * 4 2 1 6 6 N 1.47429 * 104.72176 * 37.29534 * 5 4 2 7 7 S 1.65599 * 125.64876 * 155.81846 * 6 5 4 8 8 O 1.42101 * 106.40046 * 156.15255 * 7 6 5 9 9 O 1.42108 * 106.40046 * 23.23330 * 7 6 5 10 10 C 1.76201 * 107.21695 * 269.69327 * 7 6 5 11 11 C 1.38656 * 119.87411 * 270.01958 * 10 7 6 12 12 C 1.38611 * 120.50004 * 179.97438 * 11 10 7 13 13 C 1.37641 * 120.25063 * 359.76246 * 12 11 10 14 14 C 1.40697 * 119.73794 * 0.51626 * 13 12 11 15 15 C 1.41401 * 120.24007 * 179.74088 * 14 13 12 16 16 H 1.08001 * 119.99623 * 155.11047 * 15 14 13 17 17 C 1.39945 * 120.00012 * 335.11408 * 15 14 13 18 18 N 1.30824 * 119.99909 * 342.71924 * 17 15 14 19 19 Si 1.86802 * 119.99728 * 162.72067 * 17 15 14 20 20 H 1.48493 * 109.47167 * 87.59171 * 19 17 15 21 21 H 1.48502 * 109.47007 * 327.58466 * 19 17 15 22 22 H 1.48504 * 109.46923 * 207.58958 * 19 17 15 23 23 C 1.37595 * 119.87415 * 90.00272 * 10 7 6 24 24 C 1.47022 * 108.70274 * 335.55217 * 6 5 4 25 25 H 1.09004 * 109.47160 * 296.76012 * 1 2 3 26 26 H 1.08991 * 109.47278 * 56.76093 * 1 2 3 27 27 H 1.09000 * 109.46957 * 176.76793 * 1 2 3 28 28 H 1.09003 * 111.00372 * 324.20950 * 4 2 1 29 29 H 1.08998 * 111.00801 * 88.02181 * 4 2 1 30 30 H 1.09000 * 110.49311 * 278.45424 * 5 4 2 31 31 H 1.08995 * 110.34673 * 156.06069 * 5 4 2 32 32 H 1.08004 * 119.74765 * 359.97438 * 11 10 7 33 33 H 1.08007 * 119.87396 * 180.02562 * 12 11 10 34 34 H 1.07997 * 120.13160 * 180.25192 * 13 12 11 35 35 H 0.96996 * 119.99705 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.13011 * 359.97438 * 23 10 7 37 37 H 1.09002 * 109.88055 * 120.70475 * 24 6 5 38 38 H 1.08998 * 109.88570 * 241.86717 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0790 -0.7955 -1.2137 5 6 3.4666 -1.2456 -0.6861 6 7 3.2445 -1.5507 0.7391 7 16 4.1633 -2.5740 1.6616 8 8 3.9856 -2.1663 3.0112 9 8 5.4357 -2.6476 1.0329 10 6 3.4490 -4.1793 1.5286 11 6 2.4713 -4.5768 2.4278 12 6 1.9003 -5.8364 2.3348 13 6 2.2957 -6.7055 1.3435 14 6 3.2912 -6.3150 0.4292 15 6 3.7093 -7.2015 -0.5900 16 1 4.1409 -6.8125 -1.5004 17 6 3.5639 -8.5828 -0.4190 18 7 3.3679 -9.0769 0.7764 19 14 3.6497 -9.7211 -1.8977 20 1 5.0633 -10.1002 -2.1492 21 1 3.1040 -9.0250 -3.0905 22 1 2.8499 -10.9431 -1.6287 23 6 3.8634 -5.0334 0.5326 24 6 2.0761 -0.7911 1.2074 25 1 -0.3634 0.4627 0.9176 26 1 -0.3633 0.5632 -0.8594 27 1 -0.3633 -1.0260 -0.0579 28 1 1.4451 -1.6536 -1.4374 29 1 2.1843 -0.1521 -2.0872 30 1 4.1947 -0.4415 -0.7929 31 1 3.8032 -2.1362 -1.2167 32 1 2.1522 -3.8998 3.2065 33 1 1.1391 -6.1354 3.0404 34 1 1.8466 -7.6850 1.2703 35 1 3.2674 -10.0343 0.8949 36 1 4.6246 -4.7215 -0.1671 37 1 1.3130 -1.4758 1.5777 38 1 2.3741 -0.1024 1.9978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619480578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:55 Heat of formation + Delta-G solvation = -64.820999 kcal Electronic energy + Delta-G solvation = -21873.600202 eV Core-core repulsion = 18614.097117 eV Total energy + Delta-G solvation = -3259.503085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.57672 -37.63118 -36.65824 -35.28289 -33.84124 -32.47006 -30.07839 -29.78250 -29.44287 -26.01118 -25.48113 -22.36683 -21.73231 -20.99538 -20.33852 -18.72693 -17.97795 -16.99544 -16.32184 -15.84406 -15.33547 -14.85943 -14.69527 -13.92614 -13.67534 -13.53290 -13.44669 -13.27076 -12.99043 -12.61990 -12.54493 -11.97511 -11.92738 -11.60207 -11.54863 -11.39105 -11.34670 -11.20740 -11.04673 -10.96498 -10.87311 -10.79727 -10.65023 -10.61097 -9.78756 -9.63567 -9.34831 -8.72488 -8.02848 -7.69770 -6.91906 -4.53570 0.96134 2.20748 2.63585 2.99548 3.01443 3.07906 3.53908 3.82734 4.28091 4.38433 4.42558 4.60578 4.79039 5.02556 5.30649 5.35371 5.39868 5.42651 5.54528 5.64319 5.71579 5.84684 5.92710 6.00559 6.03377 6.06526 6.17823 6.25112 6.35841 6.55919 6.65221 6.76593 6.91880 7.04796 7.22301 7.38706 7.72591 7.80164 7.94238 8.39812 8.67032 8.71780 10.03781 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.004750 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.942546 B = 5893.775986 C = 6218.758381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.127 4.127 5 C 0.122 3.878 6 N -1.014 6.014 7 S 2.702 3.298 8 O -0.971 6.971 9 O -0.967 6.967 10 C -0.631 4.631 11 C -0.147 4.147 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.092 3.908 15 C -0.461 4.461 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.794 5.794 19 Si 0.912 3.088 20 H -0.268 1.268 21 H -0.260 1.260 22 H -0.275 1.275 23 C -0.126 4.126 24 C 0.125 3.875 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.284 0.716 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 12.050 -3.584 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.166 4.166 5 C -0.003 4.003 6 N -0.851 5.851 7 S 2.800 3.200 8 O -0.962 6.962 9 O -0.957 6.957 10 C -0.723 4.723 11 C -0.168 4.168 12 C -0.140 4.140 13 C -0.138 4.138 14 C 0.088 3.912 15 C -0.490 4.490 16 H 0.100 0.900 17 C -0.143 4.143 18 N -0.420 5.420 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.184 1.184 22 H -0.200 1.200 23 C -0.147 4.147 24 C -0.001 4.001 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.844 12.039 -2.913 13.300 hybrid contribution -0.420 -1.307 -0.702 1.542 sum -5.264 10.733 -3.615 12.489 Atomic orbital electron populations 1.21770 0.94071 1.02440 1.01793 1.22215 0.96081 0.99205 0.94628 0.89973 1.22929 0.96141 1.00297 0.97252 1.21987 0.97235 1.00927 0.80190 1.58715 1.44841 1.59774 1.21781 1.01352 0.72902 0.73517 0.72263 1.93499 1.86433 1.82586 1.33671 1.93525 1.37791 1.87321 1.77101 1.29830 1.13998 1.20937 1.07553 1.20079 0.99580 0.97655 0.99474 1.20812 1.00108 0.94268 0.98856 1.21644 0.96775 0.99321 0.96018 1.17681 0.89940 0.91180 0.92374 1.19585 1.36227 0.90510 1.02684 0.89990 1.25938 0.92239 0.99309 0.96842 1.69779 1.34617 1.15009 1.22549 0.86254 0.79311 0.79071 0.81782 1.19260 1.18365 1.20027 1.20738 1.00158 0.96056 0.97781 1.21759 0.87215 0.94519 0.96588 0.92402 0.92379 0.92060 0.90199 0.90287 0.91531 0.90348 0.87692 0.88382 0.85733 0.90548 0.87152 0.91391 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.14 37.16 0.34 -0.87 16 2 C -0.10 -1.00 3.54 -88.78 -0.31 -1.32 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.13 -1.31 6.54 -24.46 -0.16 -1.47 16 5 C 0.12 1.59 6.99 -2.41 -0.02 1.58 16 6 N -1.01 -15.81 3.70 -111.28 -0.41 -16.22 16 7 S 2.70 53.43 5.93 -107.50 -0.64 52.80 16 8 O -0.97 -20.69 16.85 -57.17 -0.96 -21.65 16 9 O -0.97 -21.17 16.85 -57.17 -0.96 -22.13 16 10 C -0.63 -14.18 5.97 -39.66 -0.24 -14.41 16 11 C -0.15 -3.26 9.53 -39.29 -0.37 -3.64 16 12 C -0.12 -2.75 10.02 -39.66 -0.40 -3.15 16 13 C -0.12 -2.95 8.69 -38.87 -0.34 -3.29 16 14 C 0.09 2.39 5.57 -106.82 -0.60 1.79 16 15 C -0.46 -11.85 9.06 -37.74 -0.34 -12.19 16 16 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.82 5.15 -17.34 -0.09 1.73 16 18 N -0.79 -19.93 10.95 55.55 0.61 -19.32 16 19 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.13 -3.07 9.26 -38.87 -0.36 -3.43 16 24 C 0.12 1.61 6.58 -3.06 -0.02 1.59 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.08 0.87 8.02 -51.93 -0.42 0.46 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.11 2.12 7.60 -52.48 -0.40 1.72 16 33 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 34 H 0.12 3.17 6.17 -52.49 -0.32 2.84 16 35 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 36 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 37 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -30.49 327.80 -10.66 -41.15 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.30 Total: 4.52 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: -2.90 Total: -37.08 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.20 Total: -35.53 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.93 Total: -43.78 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.64 Total: 52.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.49 -10.66 -41.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.675 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds