Wall clock time and date at job start Tue Mar 31 2020 07:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.78005 * 2 1 4 4 C 1.55153 * 110.71868 * 236.75961 * 2 1 3 5 5 C 1.55131 * 101.48604 * 205.96981 * 4 2 1 6 6 N 1.47429 * 104.72176 * 37.29534 * 5 4 2 7 7 S 1.65599 * 125.64876 * 155.81846 * 6 5 4 8 8 O 1.42101 * 106.40046 * 156.15255 * 7 6 5 9 9 O 1.42108 * 106.40046 * 23.23330 * 7 6 5 10 10 C 1.76201 * 107.21695 * 269.69327 * 7 6 5 11 11 C 1.38656 * 119.87411 * 270.01958 * 10 7 6 12 12 C 1.38611 * 120.50004 * 179.97438 * 11 10 7 13 13 C 1.37641 * 120.25063 * 359.76246 * 12 11 10 14 14 C 1.40697 * 119.73794 * 0.51626 * 13 12 11 15 15 C 1.41401 * 120.24007 * 179.74088 * 14 13 12 16 16 H 1.08001 * 119.99623 * 155.11047 * 15 14 13 17 17 C 1.39945 * 120.00012 * 335.11408 * 15 14 13 18 18 N 1.30824 * 119.99909 * 342.71924 * 17 15 14 19 19 Si 1.86802 * 119.99728 * 162.72067 * 17 15 14 20 20 H 1.48493 * 109.47167 * 87.59171 * 19 17 15 21 21 H 1.48502 * 109.47007 * 327.58466 * 19 17 15 22 22 H 1.48504 * 109.46923 * 207.58958 * 19 17 15 23 23 C 1.37595 * 119.87415 * 90.00272 * 10 7 6 24 24 C 1.47022 * 108.70274 * 335.55217 * 6 5 4 25 25 H 1.09004 * 109.47160 * 296.76012 * 1 2 3 26 26 H 1.08991 * 109.47278 * 56.76093 * 1 2 3 27 27 H 1.09000 * 109.46957 * 176.76793 * 1 2 3 28 28 H 1.09003 * 111.00372 * 324.20950 * 4 2 1 29 29 H 1.08998 * 111.00801 * 88.02181 * 4 2 1 30 30 H 1.09000 * 110.49311 * 278.45424 * 5 4 2 31 31 H 1.08995 * 110.34673 * 156.06069 * 5 4 2 32 32 H 1.08004 * 119.74765 * 359.97438 * 11 10 7 33 33 H 1.08007 * 119.87396 * 180.02562 * 12 11 10 34 34 H 1.07997 * 120.13160 * 180.25192 * 13 12 11 35 35 H 0.96996 * 119.99705 * 180.02562 * 18 17 15 36 36 H 1.07993 * 120.13011 * 359.97438 * 23 10 7 37 37 H 1.09002 * 109.88055 * 120.70475 * 24 6 5 38 38 H 1.08998 * 109.88570 * 241.86717 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0790 -0.7955 -1.2137 5 6 3.4666 -1.2456 -0.6861 6 7 3.2445 -1.5507 0.7391 7 16 4.1633 -2.5740 1.6616 8 8 3.9856 -2.1663 3.0112 9 8 5.4357 -2.6476 1.0329 10 6 3.4490 -4.1793 1.5286 11 6 2.4713 -4.5768 2.4278 12 6 1.9003 -5.8364 2.3348 13 6 2.2957 -6.7055 1.3435 14 6 3.2912 -6.3150 0.4292 15 6 3.7093 -7.2015 -0.5900 16 1 4.1409 -6.8125 -1.5004 17 6 3.5639 -8.5828 -0.4190 18 7 3.3679 -9.0769 0.7764 19 14 3.6497 -9.7211 -1.8977 20 1 5.0633 -10.1002 -2.1492 21 1 3.1040 -9.0250 -3.0905 22 1 2.8499 -10.9431 -1.6287 23 6 3.8634 -5.0334 0.5326 24 6 2.0761 -0.7911 1.2074 25 1 -0.3634 0.4627 0.9176 26 1 -0.3633 0.5632 -0.8594 27 1 -0.3633 -1.0260 -0.0579 28 1 1.4451 -1.6536 -1.4374 29 1 2.1843 -0.1521 -2.0872 30 1 4.1947 -0.4415 -0.7929 31 1 3.8032 -2.1362 -1.2167 32 1 2.1522 -3.8998 3.2065 33 1 1.1391 -6.1354 3.0404 34 1 1.8466 -7.6850 1.2703 35 1 3.2674 -10.0343 0.8949 36 1 4.6246 -4.7215 -0.1671 37 1 1.3130 -1.4758 1.5777 38 1 2.3741 -0.1024 1.9978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619480578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:55 Heat of formation + Delta-G solvation = -83.589330 kcal Electronic energy + Delta-G solvation = -21874.414058 eV Core-core repulsion = 18614.097117 eV Total energy + Delta-G solvation = -3260.316941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.56810 -39.47127 -38.33234 -36.96544 -35.69151 -33.42948 -31.94939 -31.61804 -30.41349 -27.37365 -26.89721 -23.78555 -23.19072 -22.83270 -21.18867 -20.32248 -19.55955 -18.50635 -17.83427 -17.26250 -17.02217 -16.50890 -16.35046 -15.35324 -15.13796 -14.89444 -14.63696 -14.47461 -14.33189 -13.84096 -13.74697 -13.55643 -13.30857 -13.27264 -13.10327 -13.08248 -12.92427 -12.86427 -12.60990 -12.33333 -12.21495 -11.83644 -11.60962 -11.57741 -11.47347 -11.38605 -11.15693 -10.00560 -9.84445 -9.59083 -8.74695 -6.47789 -0.60513 0.37329 0.81298 1.36689 1.44132 1.52026 2.06665 2.17131 2.54079 2.74686 3.21193 3.47962 3.62974 3.81418 4.01634 4.26368 4.38139 4.39760 4.51016 4.57765 4.66382 4.78699 4.83107 4.86367 4.88718 4.97619 5.01830 5.13172 5.17185 5.19521 5.21635 5.32817 5.37991 5.50509 5.54151 5.58468 5.85067 5.90626 6.07115 6.49439 6.77283 6.81632 8.23610 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.004750 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.942546 B = 5893.775986 C = 6218.758381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.104 0.896 4 C -0.121 4.121 5 C 0.107 3.893 6 N -1.011 6.011 7 S 2.727 3.273 8 O -0.985 6.985 9 O -0.991 6.991 10 C -0.639 4.639 11 C -0.150 4.150 12 C -0.122 4.122 13 C -0.141 4.141 14 C 0.063 3.937 15 C -0.497 4.497 16 H 0.081 0.919 17 C 0.036 3.964 18 N -0.825 5.825 19 Si 0.986 3.014 20 H -0.263 1.263 21 H -0.256 1.256 22 H -0.264 1.264 23 C -0.146 4.146 24 C 0.110 3.890 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.292 0.708 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 13.469 -4.391 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.122 0.878 4 C -0.160 4.160 5 C -0.017 4.017 6 N -0.851 5.851 7 S 2.823 3.177 8 O -0.976 6.976 9 O -0.981 6.981 10 C -0.728 4.728 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.161 4.161 14 C 0.060 3.940 15 C -0.526 4.526 16 H 0.099 0.901 17 C -0.180 4.180 18 N -0.451 5.451 19 Si 0.806 3.194 20 H -0.188 1.188 21 H -0.179 1.179 22 H -0.188 1.188 23 C -0.167 4.167 24 C -0.015 4.015 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.846 13.436 -3.702 15.113 hybrid contribution -0.131 -1.610 -0.391 1.662 sum -5.977 11.825 -4.094 13.868 Atomic orbital electron populations 1.21765 0.92895 1.02112 1.03093 1.22249 0.96906 0.99544 0.92464 0.87791 1.22945 0.93936 1.00568 0.98505 1.22337 0.99702 1.01117 0.78555 1.58423 1.45413 1.58408 1.22842 1.00498 0.72506 0.72710 0.72027 1.93471 1.86709 1.82386 1.35016 1.93486 1.39574 1.87522 1.77549 1.30345 1.13397 1.22625 1.06460 1.20438 0.99158 0.97820 0.99695 1.21145 1.00361 0.94070 0.98506 1.21657 0.97513 0.99593 0.97290 1.18055 0.90659 0.92151 0.93136 1.19867 1.37882 0.91801 1.03009 0.90054 1.26812 0.91174 1.00263 0.99731 1.69822 1.34869 1.15909 1.24459 0.85145 0.79491 0.76938 0.77797 1.18778 1.17947 1.18795 1.20808 1.00789 0.96233 0.98871 1.22132 0.86155 0.94676 0.98506 0.91557 0.90601 0.93290 0.91186 0.87221 0.89657 0.91680 0.85376 0.85456 0.86730 0.89693 0.87330 0.91765 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.14 71.98 0.66 -1.31 16 2 C -0.09 -1.52 3.54 -9.60 -0.03 -1.56 16 3 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -2.18 6.54 32.06 0.21 -1.97 16 5 C 0.11 2.65 6.99 86.93 0.61 3.26 16 6 N -1.01 -30.41 3.70 -505.99 -1.87 -32.28 16 7 S 2.73 107.37 5.93 -56.49 -0.34 107.03 16 8 O -0.99 -41.19 16.85 -128.00 -2.16 -43.34 16 9 O -0.99 -43.74 16.85 -128.00 -2.16 -45.89 16 10 C -0.64 -29.08 5.97 22.22 0.13 -28.95 16 11 C -0.15 -6.65 9.53 22.46 0.21 -6.43 16 12 C -0.12 -5.55 10.02 22.22 0.22 -5.33 16 13 C -0.14 -7.27 8.69 22.73 0.20 -7.07 16 14 C 0.06 3.42 5.57 -21.29 -0.12 3.30 16 15 C -0.50 -26.46 9.06 23.46 0.21 -26.25 16 16 H 0.08 4.15 7.90 -2.91 -0.02 4.13 16 17 C 0.04 1.75 5.15 85.26 0.44 2.19 16 18 N -0.82 -42.23 10.95 21.83 0.24 -41.99 16 19 Si 0.99 37.10 29.59 68.60 2.03 39.13 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 C -0.15 -7.37 9.26 22.73 0.21 -7.16 16 24 C 0.11 2.63 6.58 86.73 0.57 3.20 16 25 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 28 H 0.07 1.41 8.02 -2.39 -0.02 1.40 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.13 5.00 7.60 -2.91 -0.02 4.97 16 33 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 34 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 35 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 36 H 0.11 5.33 7.60 -2.91 -0.02 5.31 16 37 H 0.06 1.57 7.82 -2.39 -0.02 1.55 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -66.81 327.80 0.32 -66.49 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 1.05 Total: 24.93 kcal Atomic # 6 Polarization: -77.60 SS G_CDS: 3.52 Total: -74.08 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.63 Total: -74.27 kcal Atomic # 8 Polarization: -84.92 SS G_CDS: -4.31 Total: -89.24 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: 107.37 SS G_CDS: -0.34 Total: 107.03 kcal Total: -66.81 0.32 -66.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.098 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds