Wall clock time and date at job start Tue Mar 31 2020 07:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.63981 * 2 1 4 4 C 1.55156 * 110.71970 * 123.14446 * 2 1 3 5 5 C 1.54901 * 101.58059 * 153.86271 * 4 2 1 6 6 N 1.47421 * 104.83684 * 322.98711 * 5 4 2 7 7 S 1.65597 * 125.65280 * 204.09073 * 6 5 4 8 8 O 1.42096 * 106.40076 * 336.48648 * 7 6 5 9 9 O 1.42102 * 106.40341 * 203.56341 * 7 6 5 10 10 C 1.76199 * 107.21765 * 90.02767 * 7 6 5 11 11 C 1.38655 * 119.87615 * 89.99967 * 10 7 6 12 12 C 1.38620 * 120.50190 * 179.72613 * 11 10 7 13 13 C 1.37643 * 120.24559 * 359.97438 * 12 11 10 14 14 C 1.40691 * 119.74538 * 0.02571 * 13 12 11 15 15 C 1.41397 * 120.24447 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00450 * 150.23489 * 15 14 13 17 17 C 1.39949 * 119.99639 * 330.23218 * 15 14 13 18 18 N 1.30823 * 119.99844 * 161.72479 * 17 15 14 19 19 Si 1.86797 * 120.00093 * 341.72296 * 17 15 14 20 20 H 1.48496 * 109.47042 * 95.41012 * 19 17 15 21 21 H 1.48500 * 109.47157 * 215.41033 * 19 17 15 22 22 H 1.48498 * 109.47101 * 335.41030 * 19 17 15 23 23 C 1.37599 * 119.87522 * 269.72853 * 10 7 6 24 24 C 1.47030 * 108.69978 * 24.35935 * 6 5 4 25 25 H 1.08999 * 109.46737 * 298.31114 * 1 2 3 26 26 H 1.09007 * 109.47021 * 58.30989 * 1 2 3 27 27 H 1.09001 * 109.47224 * 178.31264 * 1 2 3 28 28 H 1.09008 * 111.00537 * 35.78716 * 4 2 1 29 29 H 1.08998 * 111.00458 * 271.94008 * 4 2 1 30 30 H 1.09001 * 110.36583 * 204.14709 * 5 4 2 31 31 H 1.08999 * 110.36735 * 81.83528 * 5 4 2 32 32 H 1.07994 * 119.75002 * 359.74451 * 11 10 7 33 33 H 1.07998 * 119.87621 * 180.02562 * 12 11 10 34 34 H 1.07998 * 120.12626 * 180.02562 * 13 12 11 35 35 H 0.97000 * 119.99771 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.12763 * 0.24719 * 23 10 7 37 37 H 1.08998 * 109.88353 * 118.13035 * 24 6 5 38 38 H 1.08995 * 109.87885 * 239.29615 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7935 1.2151 5 6 3.4632 -1.2487 0.6896 6 7 3.2445 -1.5521 -0.7364 7 16 4.1633 -2.5769 -1.6572 8 8 5.4356 -2.6491 -1.0287 9 8 3.9852 -2.1718 -3.0075 10 6 3.4493 -4.1820 -1.5211 11 6 2.4717 -4.5815 -2.4196 12 6 1.9053 -5.8434 -2.3280 13 6 2.3091 -6.7147 -1.3419 14 6 3.3002 -6.3201 -0.4248 15 6 3.7234 -7.2069 0.5920 16 1 4.7335 -7.1526 0.9701 17 6 2.8330 -8.1551 1.1085 18 7 3.2886 -9.1896 1.7671 19 14 0.9941 -7.9436 0.8576 20 1 0.5641 -8.7217 -0.3318 21 1 0.2710 -8.4344 2.0582 22 1 0.6853 -6.5064 0.6470 23 6 3.8679 -5.0363 -0.5270 24 6 2.0793 -0.7890 -1.2074 25 1 -0.3633 0.4874 0.9048 26 1 -0.3633 0.5399 -0.8745 27 1 -0.3634 -1.0272 -0.0303 28 1 1.4451 -1.6512 1.4403 29 1 2.1850 -0.1484 2.0873 30 1 3.7959 -2.1406 1.2205 31 1 4.1931 -0.4466 0.7992 32 1 2.1493 -3.9046 -3.1968 33 1 1.1449 -6.1442 -3.0334 34 1 1.8668 -7.6975 -1.2726 35 1 2.6715 -9.8469 2.1248 36 1 4.6297 -4.7233 0.1715 37 1 2.3814 -0.1003 -1.9964 38 1 1.3156 -1.4713 -1.5804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619480579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:58 Heat of formation + Delta-G solvation = -62.519269 kcal Electronic energy + Delta-G solvation = -22042.386957 eV Core-core repulsion = 18782.983682 eV Total energy + Delta-G solvation = -3259.403275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.63623 -37.93573 -36.78258 -35.40622 -33.80710 -32.52814 -30.74633 -30.18406 -29.51207 -26.06832 -25.40365 -22.57193 -22.10760 -20.94586 -20.38255 -18.85753 -18.08781 -17.09091 -16.47648 -16.18467 -15.42125 -15.08116 -14.79357 -14.02214 -13.89276 -13.61688 -13.56646 -13.15736 -13.03924 -12.91241 -12.64158 -12.25773 -12.03345 -11.88454 -11.74387 -11.69118 -11.50555 -11.28702 -11.05796 -11.01638 -10.85719 -10.84057 -10.68033 -10.33199 -10.03872 -9.78620 -9.37996 -8.80368 -8.28904 -7.90264 -7.11184 -4.66491 0.83009 1.89009 2.39225 2.95959 3.07168 3.14798 3.39560 3.81385 4.12877 4.27177 4.32944 4.55024 4.74220 4.92972 5.13197 5.26931 5.30984 5.38483 5.49207 5.60066 5.67953 5.78476 5.80400 5.89468 5.96182 5.99213 6.02401 6.17328 6.19897 6.29942 6.41659 6.44442 6.67117 6.84702 7.06579 7.17471 7.36967 7.59682 7.75481 8.16267 8.40491 8.59051 9.90768 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.005677 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.851020 B = 4931.069274 C = 5441.034710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.128 4.128 5 C 0.121 3.879 6 N -1.014 6.014 7 S 2.703 3.297 8 O -0.963 6.963 9 O -0.968 6.968 10 C -0.625 4.625 11 C -0.157 4.157 12 C -0.092 4.092 13 C -0.198 4.198 14 C 0.074 3.926 15 C -0.444 4.444 16 H 0.096 0.904 17 C 0.084 3.916 18 N -0.799 5.799 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.244 1.244 23 C -0.103 4.103 24 C 0.125 3.875 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.288 0.712 36 H 0.119 0.881 37 H 0.068 0.932 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 14.093 -0.422 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.167 4.167 5 C -0.004 4.004 6 N -0.851 5.851 7 S 2.800 3.200 8 O -0.954 6.954 9 O -0.958 6.958 10 C -0.716 4.716 11 C -0.178 4.178 12 C -0.111 4.111 13 C -0.218 4.218 14 C 0.070 3.930 15 C -0.472 4.472 16 H 0.114 0.886 17 C -0.136 4.136 18 N -0.423 5.423 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.167 1.167 23 C -0.124 4.124 24 C -0.001 4.001 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.735 14.052 -0.785 15.197 hybrid contribution -1.301 -0.849 0.183 1.564 sum -7.036 13.202 -0.603 14.972 Atomic orbital electron populations 1.21775 0.94054 1.02447 1.01831 1.22215 0.96096 0.99252 0.94555 0.89928 1.22894 0.96141 1.00353 0.97307 1.21968 0.97373 1.01077 0.80003 1.58687 1.45155 1.59454 1.21805 1.01371 0.72912 0.73373 0.72357 1.93539 1.37569 1.87208 1.77066 1.93512 1.86406 1.82437 1.33494 1.30061 1.13261 1.21521 1.06771 1.20049 0.99657 0.97798 1.00301 1.20706 0.98722 0.94040 0.97662 1.21294 1.03657 0.99218 0.97601 1.17793 0.91273 0.91415 0.92563 1.19530 1.00563 1.10705 1.16368 0.88617 1.26165 1.02214 0.92533 0.92720 1.69684 1.38638 1.07326 1.26630 0.86357 0.81370 0.81452 0.77450 1.19449 1.21367 1.16748 1.20871 1.01111 0.93452 0.96978 1.21777 0.87204 0.94489 0.96624 0.92287 0.92415 0.92092 0.90205 0.90145 0.90208 0.91407 0.87146 0.87887 0.87606 0.90179 0.86325 0.91327 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.15 37.16 0.34 -0.85 16 2 C -0.10 -0.97 3.54 -88.78 -0.31 -1.28 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -1.30 6.54 -24.59 -0.16 -1.46 16 5 C 0.12 1.53 6.98 -2.54 -0.02 1.52 16 6 N -1.01 -15.17 3.70 -111.42 -0.41 -15.58 16 7 S 2.70 50.68 5.94 -107.50 -0.64 50.04 16 8 O -0.96 -20.08 16.85 -57.17 -0.96 -21.04 16 9 O -0.97 -19.49 16.85 -57.17 -0.96 -20.45 16 10 C -0.63 -13.24 5.97 -39.66 -0.24 -13.48 16 11 C -0.16 -3.26 9.53 -39.29 -0.37 -3.63 16 12 C -0.09 -1.94 10.02 -39.66 -0.40 -2.34 16 13 C -0.20 -4.64 7.18 -38.87 -0.28 -4.92 16 14 C 0.07 1.83 5.11 -106.83 -0.55 1.28 16 15 C -0.44 -11.64 9.57 -37.74 -0.36 -12.00 16 16 H 0.10 2.63 8.06 -52.49 -0.42 2.20 16 17 C 0.08 2.11 5.40 -17.34 -0.09 2.02 16 18 N -0.80 -20.56 13.93 55.55 0.77 -19.78 16 19 Si 0.91 19.75 24.52 -169.99 -4.17 15.59 16 20 H -0.27 -5.66 6.71 56.52 0.38 -5.28 16 21 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.24 -5.40 6.86 56.52 0.39 -5.01 16 23 C -0.10 -2.38 9.26 -38.87 -0.36 -2.74 16 24 C 0.12 1.54 6.60 -3.05 -0.02 1.52 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.08 0.87 8.05 -51.92 -0.42 0.45 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 2.05 7.60 -52.49 -0.40 1.65 16 33 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.11 2.43 4.73 -52.49 -0.25 2.18 16 35 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.12 2.63 7.60 -52.49 -0.40 2.23 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.84 7.79 -51.93 -0.40 0.43 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -30.17 322.55 -9.59 -39.76 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.26 Total: 2.97 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: -2.82 Total: -36.36 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.36 Total: -35.37 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.93 Total: -41.49 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.17 Total: 15.59 kcal Atomic # 16 Polarization: 50.68 SS G_CDS: -0.64 Total: 50.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.17 -9.59 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.756 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds