Wall clock time and date at job start Tue Mar 31 2020 07:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.63981 * 2 1 4 4 C 1.55156 * 110.71970 * 123.14446 * 2 1 3 5 5 C 1.54901 * 101.58059 * 153.86271 * 4 2 1 6 6 N 1.47421 * 104.83684 * 322.98711 * 5 4 2 7 7 S 1.65597 * 125.65280 * 204.09073 * 6 5 4 8 8 O 1.42096 * 106.40076 * 336.48648 * 7 6 5 9 9 O 1.42102 * 106.40341 * 203.56341 * 7 6 5 10 10 C 1.76199 * 107.21765 * 90.02767 * 7 6 5 11 11 C 1.38655 * 119.87615 * 89.99967 * 10 7 6 12 12 C 1.38620 * 120.50190 * 179.72613 * 11 10 7 13 13 C 1.37643 * 120.24559 * 359.97438 * 12 11 10 14 14 C 1.40691 * 119.74538 * 0.02571 * 13 12 11 15 15 C 1.41397 * 120.24447 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00450 * 150.23489 * 15 14 13 17 17 C 1.39949 * 119.99639 * 330.23218 * 15 14 13 18 18 N 1.30823 * 119.99844 * 161.72479 * 17 15 14 19 19 Si 1.86797 * 120.00093 * 341.72296 * 17 15 14 20 20 H 1.48496 * 109.47042 * 95.41012 * 19 17 15 21 21 H 1.48500 * 109.47157 * 215.41033 * 19 17 15 22 22 H 1.48498 * 109.47101 * 335.41030 * 19 17 15 23 23 C 1.37599 * 119.87522 * 269.72853 * 10 7 6 24 24 C 1.47030 * 108.69978 * 24.35935 * 6 5 4 25 25 H 1.08999 * 109.46737 * 298.31114 * 1 2 3 26 26 H 1.09007 * 109.47021 * 58.30989 * 1 2 3 27 27 H 1.09001 * 109.47224 * 178.31264 * 1 2 3 28 28 H 1.09008 * 111.00537 * 35.78716 * 4 2 1 29 29 H 1.08998 * 111.00458 * 271.94008 * 4 2 1 30 30 H 1.09001 * 110.36583 * 204.14709 * 5 4 2 31 31 H 1.08999 * 110.36735 * 81.83528 * 5 4 2 32 32 H 1.07994 * 119.75002 * 359.74451 * 11 10 7 33 33 H 1.07998 * 119.87621 * 180.02562 * 12 11 10 34 34 H 1.07998 * 120.12626 * 180.02562 * 13 12 11 35 35 H 0.97000 * 119.99771 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.12763 * 0.24719 * 23 10 7 37 37 H 1.08998 * 109.88353 * 118.13035 * 24 6 5 38 38 H 1.08995 * 109.87885 * 239.29615 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7935 1.2151 5 6 3.4632 -1.2487 0.6896 6 7 3.2445 -1.5521 -0.7364 7 16 4.1633 -2.5769 -1.6572 8 8 5.4356 -2.6491 -1.0287 9 8 3.9852 -2.1718 -3.0075 10 6 3.4493 -4.1820 -1.5211 11 6 2.4717 -4.5815 -2.4196 12 6 1.9053 -5.8434 -2.3280 13 6 2.3091 -6.7147 -1.3419 14 6 3.3002 -6.3201 -0.4248 15 6 3.7234 -7.2069 0.5920 16 1 4.7335 -7.1526 0.9701 17 6 2.8330 -8.1551 1.1085 18 7 3.2886 -9.1896 1.7671 19 14 0.9941 -7.9436 0.8576 20 1 0.5641 -8.7217 -0.3318 21 1 0.2710 -8.4344 2.0582 22 1 0.6853 -6.5064 0.6470 23 6 3.8679 -5.0363 -0.5270 24 6 2.0793 -0.7890 -1.2074 25 1 -0.3633 0.4874 0.9048 26 1 -0.3633 0.5399 -0.8745 27 1 -0.3634 -1.0272 -0.0303 28 1 1.4451 -1.6512 1.4403 29 1 2.1850 -0.1484 2.0873 30 1 3.7959 -2.1406 1.2205 31 1 4.1931 -0.4466 0.7992 32 1 2.1493 -3.9046 -3.1968 33 1 1.1449 -6.1442 -3.0334 34 1 1.8668 -7.6975 -1.2726 35 1 2.6715 -9.8469 2.1248 36 1 4.6297 -4.7233 0.1715 37 1 2.3814 -0.1003 -1.9964 38 1 1.3156 -1.4713 -1.5804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619480579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:57 Heat of formation + Delta-G solvation = -82.443204 kcal Electronic energy + Delta-G solvation = -22043.250924 eV Core-core repulsion = 18782.983682 eV Total energy + Delta-G solvation = -3260.267241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.72360 -39.57806 -38.36853 -36.99896 -35.67059 -33.44378 -32.57779 -31.93134 -30.44377 -27.27873 -26.90942 -24.16965 -23.26225 -22.72773 -21.19597 -20.42407 -19.61343 -18.52916 -18.13816 -17.41179 -17.07972 -16.64946 -16.43606 -15.64636 -14.98851 -14.90417 -14.71756 -14.59668 -14.49148 -14.07105 -13.84649 -13.62147 -13.55105 -13.43185 -13.30034 -13.15842 -12.93812 -12.89453 -12.60475 -12.35132 -12.01379 -11.86123 -11.82520 -11.60760 -11.56231 -11.45368 -11.13036 -10.10270 -9.92846 -9.73135 -8.98919 -6.63047 -0.65958 0.13487 0.61263 1.20375 1.34471 1.42348 1.97705 2.04814 2.40582 2.68510 3.17047 3.25599 3.61351 3.79284 4.00296 4.13847 4.28211 4.36846 4.39937 4.50715 4.57071 4.66039 4.70407 4.76380 4.84657 4.87958 4.96921 5.03146 5.11923 5.18813 5.20605 5.26703 5.33780 5.39424 5.50333 5.56686 5.58655 5.72298 5.95276 6.20307 6.54674 6.65874 8.09299 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.005677 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.851020 B = 4931.069274 C = 5441.034710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.103 0.897 4 C -0.123 4.123 5 C 0.107 3.893 6 N -1.011 6.011 7 S 2.726 3.274 8 O -0.989 6.989 9 O -0.978 6.978 10 C -0.634 4.634 11 C -0.145 4.145 12 C -0.094 4.094 13 C -0.206 4.206 14 C 0.056 3.944 15 C -0.483 4.483 16 H 0.059 0.941 17 C 0.049 3.951 18 N -0.840 5.840 19 Si 0.961 3.039 20 H -0.252 1.252 21 H -0.271 1.271 22 H -0.250 1.250 23 C -0.123 4.123 24 C 0.110 3.890 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.110 0.890 35 H 0.297 0.703 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.239 16.453 -1.545 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.121 0.879 4 C -0.162 4.162 5 C -0.018 4.018 6 N -0.851 5.851 7 S 2.821 3.179 8 O -0.979 6.979 9 O -0.969 6.969 10 C -0.723 4.723 11 C -0.166 4.166 12 C -0.113 4.113 13 C -0.225 4.225 14 C 0.052 3.948 15 C -0.512 4.512 16 H 0.077 0.923 17 C -0.167 4.167 18 N -0.466 5.466 19 Si 0.783 3.217 20 H -0.177 1.177 21 H -0.198 1.198 22 H -0.174 1.174 23 C -0.144 4.144 24 C -0.015 4.015 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.158 0.842 33 H 0.163 0.837 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.403 16.378 -1.916 18.507 hybrid contribution -0.431 -1.377 0.420 1.503 sum -8.834 15.001 -1.496 17.473 Atomic orbital electron populations 1.21771 0.92900 1.02087 1.03141 1.22246 0.96900 0.99593 0.92474 0.87852 1.22913 0.94050 1.00594 0.98599 1.22288 0.99727 1.01163 0.78600 1.58433 1.45770 1.58199 1.22712 1.00598 0.72514 0.72679 0.72150 1.93503 1.39477 1.87417 1.77551 1.93489 1.86631 1.82227 1.34552 1.30548 1.12900 1.22958 1.05857 1.20576 0.98101 0.98079 0.99798 1.21169 0.99163 0.93543 0.97388 1.21491 1.03182 1.00007 0.97846 1.17946 0.92348 0.91786 0.92698 1.19475 0.99785 1.13284 1.18700 0.92311 1.26857 1.05893 0.91812 0.92147 1.69708 1.40288 1.08310 1.28257 0.85556 0.76519 0.81072 0.78558 1.17699 1.19760 1.17377 1.20887 1.01744 0.93599 0.98203 1.22149 0.86214 0.94712 0.98379 0.90813 0.91344 0.93274 0.91256 0.87334 0.91708 0.89630 0.84223 0.83748 0.87185 0.89215 0.86996 0.90397 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.15 71.98 0.66 -1.18 16 2 C -0.09 -1.44 3.54 -9.60 -0.03 -1.47 16 3 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.12 -2.15 6.54 31.98 0.21 -1.94 16 5 C 0.11 2.55 6.98 86.85 0.61 3.15 16 6 N -1.01 -28.57 3.70 -506.42 -1.87 -30.44 16 7 S 2.73 99.71 5.94 -56.49 -0.34 99.37 16 8 O -0.99 -41.48 16.85 -128.00 -2.16 -43.63 16 9 O -0.98 -37.53 16.85 -128.00 -2.16 -39.68 16 10 C -0.63 -26.44 5.97 22.22 0.13 -26.31 16 11 C -0.15 -5.64 9.53 22.46 0.21 -5.43 16 12 C -0.09 -3.69 10.02 22.22 0.22 -3.47 16 13 C -0.21 -9.43 7.18 22.73 0.16 -9.27 16 14 C 0.06 2.84 5.11 -21.29 -0.11 2.73 16 15 C -0.48 -26.90 9.57 23.46 0.22 -26.68 16 16 H 0.06 3.55 8.06 -2.91 -0.02 3.52 16 17 C 0.05 2.54 5.40 85.26 0.46 3.00 16 18 N -0.84 -44.93 13.93 21.83 0.30 -44.63 16 19 Si 0.96 40.42 24.52 68.60 1.68 42.10 16 20 H -0.25 -9.86 6.71 99.48 0.67 -9.19 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.25 -10.64 6.86 99.48 0.68 -9.96 16 23 C -0.12 -5.88 9.26 22.73 0.21 -5.67 16 24 C 0.11 2.41 6.60 86.73 0.57 2.99 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 28 H 0.07 1.38 8.05 -2.38 -0.02 1.36 16 29 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.14 4.62 7.60 -2.91 -0.02 4.60 16 33 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 34 H 0.11 4.89 4.73 -2.91 -0.01 4.88 16 35 H 0.30 14.13 8.30 -92.71 -0.77 13.36 16 36 H 0.11 5.31 7.60 -2.91 -0.02 5.29 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.48 7.79 -2.39 -0.02 1.46 16 Total: -1.00 -66.88 322.55 -0.01 -66.89 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.99 Total: 19.56 kcal Atomic # 6 Polarization: -73.08 SS G_CDS: 3.53 Total: -69.54 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.57 Total: -75.07 kcal Atomic # 8 Polarization: -79.00 SS G_CDS: -4.31 Total: -83.31 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.68 Total: 42.10 kcal Atomic # 16 Polarization: 99.71 SS G_CDS: -0.34 Total: 99.37 kcal Total: -66.88 -0.01 -66.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.554 kcal (2) G-P(sol) polarization free energy of solvation -66.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds