Wall clock time and date at job start Tue Mar 31 2020 07:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99577 * 2 1 4 4 C 1.52997 * 109.47313 * 125.00199 * 3 2 1 5 5 H 1.09003 * 109.46728 * 304.99565 * 4 3 2 6 6 C 1.52999 * 109.47163 * 185.00319 * 4 3 2 7 7 N 1.46492 * 109.47431 * 64.99861 * 4 3 2 8 8 S 1.65604 * 120.00074 * 215.00237 * 7 4 3 9 9 O 1.42102 * 106.40053 * 178.53574 * 8 7 4 10 10 O 1.42101 * 106.40305 * 311.45819 * 8 7 4 11 11 C 1.76195 * 107.21782 * 65.00088 * 8 7 4 12 12 C 1.38660 * 119.87335 * 269.72710 * 11 8 7 13 13 C 1.38617 * 120.49972 * 179.72047 * 12 11 8 14 14 C 1.37640 * 120.24950 * 0.55638 * 13 12 11 15 15 C 1.40707 * 119.74138 * 359.71957 * 14 13 12 16 16 C 1.41392 * 120.23852 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99896 * 204.37770 * 16 15 14 18 18 C 1.39945 * 120.00430 * 24.37776 * 16 15 14 19 19 N 1.30826 * 119.99817 * 17.87291 * 18 16 15 20 20 Si 1.86794 * 120.00099 * 197.86572 * 18 16 15 21 21 H 1.48502 * 109.46951 * 90.00289 * 20 18 16 22 22 H 1.48496 * 109.47525 * 210.00103 * 20 18 16 23 23 H 1.48502 * 109.47621 * 330.00396 * 20 18 16 24 24 C 1.37598 * 119.87967 * 89.99780 * 11 8 7 25 25 H 1.07996 * 120.00284 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99529 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00728 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47364 * 4.99694 * 3 2 1 29 29 H 1.08999 * 109.47226 * 245.00084 * 3 2 1 30 30 H 1.09004 * 109.47577 * 179.97438 * 6 4 3 31 31 H 1.09003 * 109.46682 * 299.99273 * 6 4 3 32 32 H 1.08996 * 109.47850 * 59.99505 * 6 4 3 33 33 H 0.97008 * 120.00090 * 35.00021 * 7 4 3 34 34 H 1.07999 * 119.75039 * 359.97438 * 12 11 8 35 35 H 1.07999 * 119.87823 * 180.25078 * 13 12 11 36 36 H 1.08002 * 120.12939 * 179.74760 * 14 13 12 37 37 H 0.97004 * 119.99890 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.12612 * 359.97438 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3333 1.1816 5 1 2.4882 1.1471 2.1060 6 6 3.7089 2.7048 1.2552 7 7 4.0546 0.2972 1.0001 8 16 4.6585 -0.5094 2.3144 9 8 5.5882 -1.4585 1.8102 10 8 5.0027 0.4833 3.2711 11 6 3.3320 -1.4351 3.0129 12 6 2.5338 -0.8658 3.9935 13 6 1.4832 -1.5802 4.5479 14 6 1.2282 -2.8690 4.1376 15 6 2.0352 -3.4589 3.1472 16 6 1.7823 -4.7819 2.7175 17 1 2.5775 -5.3700 2.2836 18 6 0.5018 -5.3295 2.8544 19 7 -0.5284 -4.5452 3.0420 20 14 0.2633 -7.1802 2.7690 21 1 0.3857 -7.7584 4.1314 22 1 -1.0844 -7.4811 2.2229 23 1 1.2992 -7.7726 1.8851 24 6 3.0954 -2.7220 2.5874 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3584 2.1317 0.0895 29 1 2.6212 1.4028 -0.9314 30 1 4.4008 2.7251 2.0973 31 1 4.2557 2.8910 0.3308 32 1 2.9503 3.4758 1.3902 33 1 4.3761 0.0836 0.1101 34 1 2.7297 0.1432 4.3250 35 1 0.8654 -1.1256 5.3082 36 1 0.4117 -3.4253 4.5737 37 1 -1.4161 -4.9247 3.1366 38 1 3.7208 -3.1649 1.8263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619484242.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:32 Heat of formation + Delta-G solvation = -71.323153 kcal Electronic energy + Delta-G solvation = -22054.070965 eV Core-core repulsion = 18794.285925 eV Total energy + Delta-G solvation = -3259.785040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.45031 -38.56900 -38.04205 -36.88099 -35.66769 -34.45017 -31.91078 -31.58182 -31.00561 -27.42104 -27.34749 -23.66630 -22.88169 -22.43834 -20.68022 -20.64115 -19.64751 -18.53537 -17.71425 -17.25795 -16.83853 -16.53001 -16.14537 -15.99344 -15.23075 -15.08280 -14.81069 -14.31785 -14.19682 -13.96703 -13.70863 -13.31178 -13.20150 -13.10099 -13.05932 -13.02997 -12.86658 -12.79819 -12.61392 -12.28300 -12.22460 -11.90449 -11.83867 -11.54745 -11.33311 -11.14922 -10.50100 -10.08008 -9.83036 -9.55208 -8.73480 -6.45070 -0.45305 0.42211 0.84897 1.36149 1.45266 1.47021 1.48607 2.16239 2.16580 2.55802 2.80877 3.48955 3.54983 3.84605 4.06854 4.18004 4.30319 4.43011 4.46355 4.52215 4.59582 4.83008 4.84425 4.90791 4.99569 5.05565 5.08126 5.15297 5.20341 5.35024 5.42091 5.46677 5.57363 5.82208 5.89474 5.94187 6.00163 6.10675 6.19773 6.52927 6.79896 6.85239 8.24105 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.005474 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.452220 B = 5114.192129 C = 5739.062508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.086 4.086 4 C 0.147 3.853 5 H 0.075 0.925 6 C -0.168 4.168 7 N -1.099 6.099 8 S 2.716 3.284 9 O -1.000 7.000 10 O -0.983 6.983 11 C -0.635 4.635 12 C -0.146 4.146 13 C -0.121 4.121 14 C -0.140 4.140 15 C 0.065 3.935 16 C -0.499 4.499 17 H 0.076 0.924 18 C 0.040 3.960 19 N -0.819 5.819 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.143 4.143 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.426 0.574 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.291 0.709 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 10.651 -5.560 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.179 4.179 3 C -0.124 4.124 4 C 0.041 3.959 5 H 0.093 0.907 6 C -0.227 4.227 7 N -0.862 5.862 8 S 2.808 3.192 9 O -0.991 6.991 10 O -0.973 6.973 11 C -0.724 4.724 12 C -0.167 4.167 13 C -0.141 4.141 14 C -0.160 4.160 15 C 0.062 3.938 16 C -0.528 4.528 17 H 0.094 0.906 18 C -0.176 4.176 19 N -0.445 5.445 20 Si 0.801 3.199 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.184 1.184 24 C -0.164 4.164 25 H 0.136 0.864 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.263 0.737 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.010 10.752 -5.068 11.929 hybrid contribution -0.924 -1.696 -0.158 1.938 sum 0.086 9.056 -5.226 10.456 Atomic orbital electron populations 1.23894 0.96185 1.01838 1.01536 1.23017 0.96244 0.99077 0.99519 1.21064 0.97804 0.95113 0.98448 1.20959 0.87704 0.87570 0.99704 0.90701 1.22320 1.01884 0.95222 1.03262 1.55323 1.56171 1.51083 1.23588 1.00888 0.72985 0.72377 0.72965 1.93495 1.61534 1.63593 1.80436 1.93497 1.82383 1.59516 1.61940 1.30229 1.21383 1.08235 1.12534 1.20434 0.96937 1.00020 0.99266 1.21119 0.97772 0.94917 1.00247 1.21620 1.01262 0.95707 0.97407 1.18006 0.91517 0.93573 0.90737 1.19832 0.96636 0.98343 1.37964 0.90606 1.26681 0.94575 1.04974 0.91328 1.69816 1.00657 1.39147 1.34841 0.85225 0.78684 0.76285 0.79730 1.18652 1.18956 1.18447 1.20791 1.01046 0.93159 1.01391 0.86410 0.90686 0.89546 0.87947 0.88310 0.92771 0.90431 0.89351 0.73744 0.85161 0.85720 0.87027 0.89797 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.47 14.32 67.78 0.97 -4.50 16 2 C -0.16 -4.42 9.25 25.65 0.24 -4.18 16 3 C -0.09 -1.68 5.26 29.85 0.16 -1.52 16 4 C 0.15 3.41 2.76 44.99 0.12 3.54 16 5 H 0.07 1.99 7.24 -2.39 -0.02 1.97 16 6 C -0.17 -3.13 9.52 71.98 0.69 -2.45 16 7 N -1.10 -29.35 5.17 -169.40 -0.88 -30.23 16 8 S 2.72 98.82 5.65 -56.49 -0.32 98.50 16 9 O -1.00 -41.82 17.27 -128.00 -2.21 -44.03 16 10 O -0.98 -37.91 16.52 -128.00 -2.11 -40.02 16 11 C -0.64 -27.40 5.81 22.22 0.13 -27.27 16 12 C -0.15 -6.12 8.92 22.46 0.20 -5.92 16 13 C -0.12 -5.37 10.02 22.22 0.22 -5.15 16 14 C -0.14 -7.11 8.70 22.73 0.20 -6.91 16 15 C 0.06 3.45 5.58 -21.29 -0.12 3.33 16 16 C -0.50 -26.49 9.05 23.46 0.21 -26.28 16 17 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 18 C 0.04 1.97 5.14 85.26 0.44 2.40 16 19 N -0.82 -40.93 10.95 21.83 0.24 -40.69 16 20 Si 0.98 37.34 29.59 68.60 2.03 39.37 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 C -0.14 -7.01 9.26 22.73 0.21 -6.80 16 25 H 0.12 2.56 7.84 -2.91 -0.02 2.54 16 26 H 0.07 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.09 2.83 8.03 -2.91 -0.02 2.81 16 28 H 0.10 1.55 7.79 -2.39 -0.02 1.53 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.23 7.64 -2.38 -0.02 1.21 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.43 9.24 8.84 -96.73 -0.85 8.39 16 34 H 0.13 4.76 7.59 -2.91 -0.02 4.74 16 35 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 36 H 0.11 5.83 6.15 -2.91 -0.02 5.81 16 37 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 38 H 0.11 5.13 7.60 -2.91 -0.02 5.10 16 Total: -1.00 -65.12 335.54 0.62 -64.50 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.21 Total: 34.32 kcal Atomic # 6 Polarization: -85.38 SS G_CDS: 3.67 Total: -81.71 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -0.64 Total: -70.91 kcal Atomic # 8 Polarization: -79.73 SS G_CDS: -4.32 Total: -84.06 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Atomic # 16 Polarization: 98.82 SS G_CDS: -0.32 Total: 98.50 kcal Total: -65.12 0.62 -64.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619484242.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.827 kcal (2) G-P(sol) polarization free energy of solvation -65.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds