Wall clock time and date at job start Tue Mar 31 2020 07:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.99886 * 2 1 4 4 C 1.54337 * 109.98864 * 238.96211 * 2 1 3 5 5 C 1.55154 * 103.02419 * 218.66376 * 4 2 1 6 6 C 1.54910 * 101.57914 * 35.30766 * 5 4 2 7 7 N 1.47024 * 109.88511 * 121.10071 * 2 1 3 8 8 S 1.65600 * 125.64339 * 298.39415 * 7 2 1 9 9 O 1.42101 * 106.40018 * 156.17453 * 8 7 2 10 10 O 1.42091 * 106.40589 * 23.25315 * 8 7 2 11 11 C 1.76200 * 107.21719 * 269.71192 * 8 7 2 12 12 C 1.38655 * 119.87533 * 269.98308 * 11 8 7 13 13 C 1.38618 * 120.49856 * 180.02562 * 12 11 8 14 14 C 1.37640 * 120.24964 * 359.67096 * 13 12 11 15 15 C 1.40699 * 119.74172 * 0.60253 * 14 13 12 16 16 C 1.41393 * 120.24457 * 179.69813 * 15 14 13 17 17 H 1.07993 * 120.00145 * 154.76405 * 16 15 14 18 18 C 1.39953 * 119.99672 * 334.76268 * 16 15 14 19 19 N 1.30818 * 119.99991 * 334.23452 * 18 16 15 20 20 Si 1.86800 * 119.99568 * 154.22923 * 18 16 15 21 21 H 1.48496 * 109.47258 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47321 * 239.99906 * 20 18 16 23 23 H 1.48502 * 109.46599 * 120.00076 * 20 18 16 24 24 C 1.37594 * 119.87350 * 90.00450 * 11 8 7 25 25 H 1.09010 * 109.46950 * 298.90331 * 1 2 3 26 26 H 1.09001 * 109.47557 * 58.89581 * 1 2 3 27 27 H 1.08995 * 109.47375 * 178.90266 * 1 2 3 28 28 H 1.09004 * 110.84644 * 100.20116 * 4 2 1 29 29 H 1.09003 * 110.66916 * 337.05549 * 4 2 1 30 30 H 1.08997 * 111.00920 * 277.24096 * 5 4 2 31 31 H 1.08994 * 111.00383 * 153.38173 * 5 4 2 32 32 H 1.08993 * 110.37179 * 204.14723 * 6 5 4 33 33 H 1.09010 * 110.36545 * 81.82926 * 6 5 4 34 34 H 1.07993 * 119.75216 * 0.02562 * 12 11 8 35 35 H 1.08007 * 119.87107 * 179.97438 * 13 12 11 36 36 H 1.08000 * 120.12711 * 180.30034 * 14 13 12 37 37 H 0.97004 * 120.00076 * 354.22865 * 19 18 16 38 38 H 1.07998 * 120.12796 * 359.95243 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0575 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6916 6 6 2.8099 -1.8826 0.7367 7 7 2.0300 -0.7142 1.1838 8 16 1.7565 -0.2817 2.7588 9 8 1.9043 -1.4651 3.5313 10 8 0.5725 0.5040 2.7594 11 6 3.0671 0.7933 3.2396 12 6 4.2214 0.2675 3.7998 13 6 5.2602 1.1014 4.1832 14 6 5.1588 2.4624 4.0050 15 6 3.9899 3.0076 3.4429 16 6 3.8718 4.4047 3.2609 17 1 3.2134 4.7964 2.4997 18 6 4.6080 5.2801 4.0673 19 7 4.9908 4.9046 5.2605 20 14 5.0442 6.9846 3.4396 21 1 4.4975 7.1628 2.0705 22 1 6.5210 7.1373 3.4073 23 1 4.4603 8.0089 4.3425 24 6 2.9412 2.1514 3.0582 25 1 -0.3633 0.4968 0.8997 26 1 -0.3634 0.5309 -0.8799 27 1 -0.3634 -1.0274 -0.0197 28 1 2.3597 -0.0450 -2.0192 29 1 1.3065 -1.4404 -1.6226 30 1 4.1669 -0.8770 -0.6580 31 1 3.4805 -2.4155 -1.2793 32 1 3.6655 -2.0414 1.3930 33 1 2.1800 -2.7719 0.7113 34 1 4.3117 -0.7996 3.9385 35 1 6.1546 0.6810 4.6190 36 1 5.9714 3.1098 4.3000 37 1 4.6945 4.0536 5.6196 38 1 2.0414 2.5588 2.6213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619488027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:54 Heat of formation + Delta-G solvation = -67.674676 kcal Electronic energy + Delta-G solvation = -22147.272184 eV Core-core repulsion = 18887.645355 eV Total energy + Delta-G solvation = -3259.626830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.64243 -37.87014 -36.76450 -35.36422 -34.08770 -31.25234 -30.84135 -30.09518 -29.67722 -25.64358 -25.31343 -22.09261 -21.70870 -21.26548 -21.00764 -18.82470 -18.01987 -17.25687 -16.46971 -15.89366 -15.06250 -14.90727 -14.30563 -13.96981 -13.87708 -13.69008 -13.52767 -13.44868 -12.99103 -12.62128 -12.43233 -12.17550 -11.71849 -11.59318 -11.57987 -11.49734 -11.36410 -11.32822 -11.08380 -11.06749 -10.75651 -10.70583 -10.54653 -10.50848 -9.82173 -9.71027 -9.16423 -8.79873 -8.24705 -7.89259 -7.35703 -4.62814 0.88602 2.03528 2.57040 3.07983 3.14195 3.26754 3.44281 3.90588 4.19832 4.34096 4.43217 4.58425 4.87947 4.99279 5.18605 5.22586 5.37891 5.45302 5.57442 5.68085 5.74896 5.82310 5.85674 5.89785 6.07894 6.08749 6.13553 6.37960 6.44738 6.51290 6.52476 6.57845 6.82727 7.03043 7.24903 7.46737 7.53916 7.62397 7.89153 8.00709 8.50329 8.66409 9.88937 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.004996 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.989843 B = 5603.084450 C = 5986.972653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.124 4.124 5 C -0.132 4.132 6 C 0.123 3.877 7 N -1.009 6.009 8 S 2.702 3.298 9 O -0.970 6.970 10 O -0.963 6.963 11 C -0.621 4.621 12 C -0.166 4.166 13 C -0.099 4.099 14 C -0.179 4.179 15 C 0.078 3.922 16 C -0.518 4.518 17 H 0.081 0.919 18 C 0.038 3.962 19 N -0.793 5.793 20 Si 1.071 2.929 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.276 1.276 24 C -0.124 4.124 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.300 0.700 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 -8.023 -11.062 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.095 0.905 4 C -0.162 4.162 5 C -0.171 4.171 6 C -0.002 4.002 7 N -0.846 5.846 8 S 2.800 3.200 9 O -0.961 6.961 10 O -0.954 6.954 11 C -0.713 4.713 12 C -0.187 4.187 13 C -0.118 4.118 14 C -0.199 4.199 15 C 0.074 3.926 16 C -0.545 4.545 17 H 0.099 0.901 18 C -0.184 4.184 19 N -0.416 5.416 20 Si 0.895 3.105 21 H -0.200 1.200 22 H -0.198 1.198 23 H -0.202 1.202 24 C -0.145 4.145 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.164 -6.931 -10.019 12.373 hybrid contribution -0.071 -1.024 -0.315 1.074 sum -2.234 -7.955 -10.334 13.231 Atomic orbital electron populations 1.22533 0.94880 1.02520 1.04377 1.21291 0.94090 0.96057 0.84319 0.90524 1.22701 0.97601 0.99355 0.96585 1.22788 0.98301 1.00620 0.95343 1.21915 0.94771 0.87771 0.95747 1.58763 1.66837 1.37028 1.22012 1.01351 0.74321 0.73460 0.70858 1.93507 1.87424 1.47691 1.67492 1.93485 1.45011 1.71399 1.85501 1.29952 1.16333 1.08874 1.16124 1.20008 0.94200 0.97902 1.06556 1.20727 0.97375 0.94053 0.99642 1.21433 0.97879 0.94150 1.06394 1.17752 0.90333 0.93651 0.90899 1.20638 1.24690 0.91026 1.18178 0.90104 1.27107 0.91868 1.06235 0.93194 1.70424 1.33322 1.24038 1.13842 0.83555 0.77802 0.72793 0.76383 1.19977 1.19846 1.20200 1.20731 0.98082 0.90811 1.04855 0.89226 0.91636 0.92549 0.90330 0.90705 0.90415 0.90258 0.90654 0.91597 0.87556 0.88219 0.87023 0.88678 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.09 37.16 0.34 -2.04 16 2 C 0.15 1.98 3.67 -66.95 -0.25 1.74 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.12 -1.23 6.48 -24.89 -0.16 -1.39 16 5 C -0.13 -1.31 7.09 -24.58 -0.17 -1.49 16 6 C 0.12 1.55 6.98 -2.53 -0.02 1.53 16 7 N -1.01 -15.59 3.40 -104.41 -0.35 -15.95 16 8 S 2.70 52.58 5.89 -107.50 -0.63 51.95 16 9 O -0.97 -20.44 16.85 -57.17 -0.96 -21.40 16 10 O -0.96 -20.29 14.40 -57.17 -0.82 -21.11 16 11 C -0.62 -13.83 5.97 -39.66 -0.24 -14.07 16 12 C -0.17 -3.65 9.53 -39.29 -0.37 -4.02 16 13 C -0.10 -2.21 10.02 -39.66 -0.40 -2.61 16 14 C -0.18 -4.42 7.96 -38.87 -0.31 -4.73 16 15 C 0.08 2.01 5.30 -106.82 -0.57 1.44 16 16 C -0.52 -13.35 8.99 -37.74 -0.34 -13.68 16 17 H 0.08 2.02 7.96 -52.49 -0.42 1.60 16 18 C 0.04 0.94 4.93 -17.34 -0.09 0.85 16 19 N -0.79 -20.55 12.31 55.55 0.68 -19.87 16 20 Si 1.07 20.90 30.00 -169.99 -5.10 15.80 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.12 -3.00 9.26 -38.87 -0.36 -3.36 16 25 H 0.09 1.40 5.72 -51.92 -0.30 1.10 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.64 7.84 -51.93 -0.41 0.24 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.11 2.12 7.60 -52.49 -0.40 1.73 16 35 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 36 H 0.11 2.80 6.49 -52.49 -0.34 2.46 16 37 H 0.30 7.99 6.70 -40.82 -0.27 7.72 16 38 H 0.11 2.62 7.60 -52.49 -0.40 2.22 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -30.10 322.56 -10.39 -40.50 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.13 Total: 7.05 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: -2.93 Total: -41.82 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.33 Total: -35.82 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -1.79 Total: -42.52 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.10 Total: 15.80 kcal Atomic # 16 Polarization: 52.58 SS G_CDS: -0.63 Total: 51.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.10 -10.39 -40.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.177 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds