Wall clock time and date at job start Tue Mar 31 2020 07:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.99886 * 2 1 4 4 C 1.54337 * 109.98864 * 238.96211 * 2 1 3 5 5 C 1.55154 * 103.02419 * 218.66376 * 4 2 1 6 6 C 1.54910 * 101.57914 * 35.30766 * 5 4 2 7 7 N 1.47024 * 109.88511 * 121.10071 * 2 1 3 8 8 S 1.65600 * 125.64339 * 298.39415 * 7 2 1 9 9 O 1.42101 * 106.40018 * 156.17453 * 8 7 2 10 10 O 1.42091 * 106.40589 * 23.25315 * 8 7 2 11 11 C 1.76200 * 107.21719 * 269.71192 * 8 7 2 12 12 C 1.38655 * 119.87533 * 269.98308 * 11 8 7 13 13 C 1.38618 * 120.49856 * 180.02562 * 12 11 8 14 14 C 1.37640 * 120.24964 * 359.67096 * 13 12 11 15 15 C 1.40699 * 119.74172 * 0.60253 * 14 13 12 16 16 C 1.41393 * 120.24457 * 179.69813 * 15 14 13 17 17 H 1.07993 * 120.00145 * 154.76405 * 16 15 14 18 18 C 1.39953 * 119.99672 * 334.76268 * 16 15 14 19 19 N 1.30818 * 119.99991 * 334.23452 * 18 16 15 20 20 Si 1.86800 * 119.99568 * 154.22923 * 18 16 15 21 21 H 1.48496 * 109.47258 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47321 * 239.99906 * 20 18 16 23 23 H 1.48502 * 109.46599 * 120.00076 * 20 18 16 24 24 C 1.37594 * 119.87350 * 90.00450 * 11 8 7 25 25 H 1.09010 * 109.46950 * 298.90331 * 1 2 3 26 26 H 1.09001 * 109.47557 * 58.89581 * 1 2 3 27 27 H 1.08995 * 109.47375 * 178.90266 * 1 2 3 28 28 H 1.09004 * 110.84644 * 100.20116 * 4 2 1 29 29 H 1.09003 * 110.66916 * 337.05549 * 4 2 1 30 30 H 1.08997 * 111.00920 * 277.24096 * 5 4 2 31 31 H 1.08994 * 111.00383 * 153.38173 * 5 4 2 32 32 H 1.08993 * 110.37179 * 204.14723 * 6 5 4 33 33 H 1.09010 * 110.36545 * 81.82926 * 6 5 4 34 34 H 1.07993 * 119.75216 * 0.02562 * 12 11 8 35 35 H 1.08007 * 119.87107 * 179.97438 * 13 12 11 36 36 H 1.08000 * 120.12711 * 180.30034 * 14 13 12 37 37 H 0.97004 * 120.00076 * 354.22865 * 19 18 16 38 38 H 1.07998 * 120.12796 * 359.95243 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0575 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6916 6 6 2.8099 -1.8826 0.7367 7 7 2.0300 -0.7142 1.1838 8 16 1.7565 -0.2817 2.7588 9 8 1.9043 -1.4651 3.5313 10 8 0.5725 0.5040 2.7594 11 6 3.0671 0.7933 3.2396 12 6 4.2214 0.2675 3.7998 13 6 5.2602 1.1014 4.1832 14 6 5.1588 2.4624 4.0050 15 6 3.9899 3.0076 3.4429 16 6 3.8718 4.4047 3.2609 17 1 3.2134 4.7964 2.4997 18 6 4.6080 5.2801 4.0673 19 7 4.9908 4.9046 5.2605 20 14 5.0442 6.9846 3.4396 21 1 4.4975 7.1628 2.0705 22 1 6.5210 7.1373 3.4073 23 1 4.4603 8.0089 4.3425 24 6 2.9412 2.1514 3.0582 25 1 -0.3633 0.4968 0.8997 26 1 -0.3634 0.5309 -0.8799 27 1 -0.3634 -1.0274 -0.0197 28 1 2.3597 -0.0450 -2.0192 29 1 1.3065 -1.4404 -1.6226 30 1 4.1669 -0.8770 -0.6580 31 1 3.4805 -2.4155 -1.2793 32 1 3.6655 -2.0414 1.3930 33 1 2.1800 -2.7719 0.7113 34 1 4.3117 -0.7996 3.9385 35 1 6.1546 0.6810 4.6190 36 1 5.9714 3.1098 4.3000 37 1 4.6945 4.0536 5.6196 38 1 2.0414 2.5588 2.6213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619488027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:54 Heat of formation + Delta-G solvation = -85.988026 kcal Electronic energy + Delta-G solvation = -22148.066311 eV Core-core repulsion = 18887.645355 eV Total energy + Delta-G solvation = -3260.420956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.73561 -39.65383 -38.39442 -37.00752 -35.95881 -32.24025 -31.96306 -31.87726 -31.53199 -27.23302 -26.60472 -23.77371 -23.10355 -22.87835 -22.00309 -20.55125 -19.53399 -18.60830 -18.07549 -17.24023 -16.78399 -16.52048 -15.97090 -15.68901 -15.20797 -14.96845 -14.81607 -14.55905 -14.41133 -14.04240 -13.96763 -13.56534 -13.39527 -13.22591 -13.15713 -13.02527 -12.77418 -12.65357 -12.47664 -12.44487 -12.00443 -11.98854 -11.64456 -11.55059 -11.52808 -11.49674 -10.99422 -10.14930 -9.98005 -9.80799 -9.30055 -6.61053 -0.65736 0.19479 0.70639 1.48165 1.56633 1.77418 2.00069 2.27615 2.46736 2.68196 3.18235 3.28083 3.61079 3.84611 4.03730 4.12325 4.25679 4.29376 4.39096 4.52602 4.55295 4.63795 4.69733 4.76455 4.88964 4.90667 5.02106 5.03088 5.14124 5.15385 5.23905 5.37526 5.44032 5.45950 5.52377 5.56971 5.64656 5.66774 5.97139 6.10245 6.58260 6.74813 7.91612 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019924 B = 0.004996 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.989843 B = 5603.084450 C = 5986.972653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 H 0.061 0.939 4 C -0.114 4.114 5 C -0.124 4.124 6 C 0.107 3.893 7 N -1.006 6.006 8 S 2.725 3.275 9 O -0.985 6.985 10 O -0.983 6.983 11 C -0.631 4.631 12 C -0.163 4.163 13 C -0.100 4.100 14 C -0.194 4.194 15 C 0.051 3.949 16 C -0.551 4.551 17 H 0.077 0.923 18 C 0.005 3.995 19 N -0.813 5.813 20 Si 1.122 2.878 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.267 1.267 24 C -0.143 4.143 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.283 0.717 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 -9.376 -13.136 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.029 3.971 3 H 0.079 0.921 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.017 4.017 7 N -0.846 5.846 8 S 2.820 3.180 9 O -0.975 6.975 10 O -0.974 6.974 11 C -0.719 4.719 12 C -0.184 4.184 13 C -0.119 4.119 14 C -0.214 4.214 15 C 0.048 3.952 16 C -0.579 4.579 17 H 0.095 0.905 18 C -0.211 4.211 19 N -0.436 5.436 20 Si 0.939 3.061 21 H -0.186 1.186 22 H -0.188 1.188 23 H -0.192 1.192 24 C -0.164 4.164 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.856 -8.286 -12.070 14.758 hybrid contribution -0.221 -0.813 0.273 0.886 sum -2.078 -9.099 -11.797 15.042 Atomic orbital electron populations 1.22518 0.94543 1.03271 1.03942 1.21605 0.94532 0.95875 0.85051 0.92058 1.22721 0.97920 0.99677 0.94934 1.22808 0.97812 1.01856 0.93828 1.22319 0.94818 0.87207 0.97338 1.58516 1.67209 1.37930 1.20949 1.00621 0.73172 0.72448 0.71755 1.93480 1.87379 1.47586 1.69072 1.93466 1.45533 1.71991 1.86374 1.30518 1.17490 1.08812 1.15063 1.20429 0.93733 0.99180 1.05032 1.21095 0.98755 0.93210 0.98850 1.21457 0.97476 0.95205 1.07222 1.18103 0.91237 0.94336 0.91563 1.20846 1.26273 0.91675 1.19133 0.90476 1.28542 0.90748 1.09428 0.92427 1.70545 1.34811 1.23475 1.14760 0.82948 0.78181 0.68430 0.76570 1.18582 1.18759 1.19176 1.20778 0.97876 0.91825 1.05926 0.92481 0.89147 0.91280 0.88664 0.88526 0.91227 0.86960 0.91009 0.89721 0.85051 0.85011 0.88043 0.90455 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.47 9.09 71.98 0.65 -3.81 16 2 C 0.13 3.38 3.67 45.34 0.17 3.55 16 3 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.11 -1.84 6.48 31.79 0.21 -1.63 16 5 C -0.12 -2.03 7.09 31.99 0.23 -1.80 16 6 C 0.11 2.41 6.98 86.86 0.61 3.02 16 7 N -1.01 -29.69 3.40 -484.26 -1.65 -31.33 16 8 S 2.73 105.37 5.89 -56.49 -0.33 105.03 16 9 O -0.98 -40.49 16.85 -128.00 -2.16 -42.65 16 10 O -0.98 -42.10 14.40 -128.00 -1.84 -43.95 16 11 C -0.63 -28.31 5.97 22.22 0.13 -28.17 16 12 C -0.16 -7.07 9.53 22.46 0.21 -6.85 16 13 C -0.10 -4.46 10.02 22.22 0.22 -4.24 16 14 C -0.19 -9.84 7.96 22.73 0.18 -9.66 16 15 C 0.05 2.75 5.30 -21.29 -0.11 2.63 16 16 C -0.55 -29.58 8.99 23.46 0.21 -29.37 16 17 H 0.08 4.03 7.96 -2.91 -0.02 4.01 16 18 C 0.00 0.25 4.93 85.26 0.42 0.67 16 19 N -0.81 -43.43 12.31 21.83 0.27 -43.16 16 20 Si 1.12 42.23 30.00 68.60 2.06 44.29 16 21 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 22 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 23 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 24 C -0.14 -7.19 9.26 22.73 0.21 -6.98 16 25 H 0.06 1.77 5.72 -2.38 -0.01 1.76 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.10 1.20 7.84 -2.39 -0.02 1.18 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.13 4.99 7.60 -2.91 -0.02 4.97 16 35 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 36 H 0.10 5.28 6.49 -2.91 -0.02 5.26 16 37 H 0.28 15.82 6.70 -92.71 -0.62 15.19 16 38 H 0.11 5.35 7.60 -2.91 -0.02 5.32 16 Total: -1.00 -67.08 322.56 0.89 -66.19 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 1.20 Total: 28.23 kcal Atomic # 6 Polarization: -85.99 SS G_CDS: 3.34 Total: -82.66 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.38 Total: -74.50 kcal Atomic # 8 Polarization: -82.59 SS G_CDS: -4.00 Total: -86.59 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.06 Total: 44.29 kcal Atomic # 16 Polarization: 105.37 SS G_CDS: -0.33 Total: 105.03 kcal Total: -67.08 0.89 -66.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.793 kcal (2) G-P(sol) polarization free energy of solvation -67.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds