Wall clock time and date at job start Tue Mar 31 2020 07:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.99885 * 2 1 4 4 C 1.54326 * 109.87919 * 121.08500 * 2 1 3 5 5 C 1.55165 * 102.93875 * 141.61007 * 4 2 1 6 6 C 1.54910 * 101.58180 * 324.50102 * 5 4 2 7 7 N 1.47023 * 109.88682 * 238.89543 * 2 1 3 8 8 S 1.65600 * 125.64577 * 61.60843 * 7 2 1 9 9 O 1.42098 * 106.40130 * 23.55690 * 8 7 2 10 10 O 1.42100 * 106.39970 * 156.47987 * 8 7 2 11 11 C 1.76204 * 107.21785 * 270.01854 * 8 7 2 12 12 C 1.38657 * 119.87196 * 269.72899 * 11 8 7 13 13 C 1.38620 * 120.49831 * 179.72044 * 12 11 8 14 14 C 1.37640 * 120.24632 * 0.55539 * 13 12 11 15 15 C 1.40701 * 119.74647 * 359.72100 * 14 13 12 16 16 C 1.41394 * 120.24558 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99802 * 155.30518 * 16 15 14 18 18 C 1.39947 * 119.99906 * 335.30338 * 16 15 14 19 19 N 1.30819 * 119.99689 * 342.23286 * 18 16 15 20 20 Si 1.86800 * 119.99694 * 162.22678 * 18 16 15 21 21 H 1.48504 * 109.46817 * 94.66864 * 20 18 16 22 22 H 1.48504 * 109.46940 * 214.66206 * 20 18 16 23 23 H 1.48492 * 109.47392 * 334.66473 * 20 18 16 24 24 C 1.37594 * 119.87526 * 90.00197 * 11 8 7 25 25 H 1.08996 * 109.47650 * 300.36556 * 1 2 3 26 26 H 1.08998 * 109.46735 * 60.36462 * 1 2 3 27 27 H 1.08997 * 109.47237 * 180.36082 * 1 2 3 28 28 H 1.09009 * 110.72032 * 23.25323 * 4 2 1 29 29 H 1.08992 * 110.72533 * 259.97473 * 4 2 1 30 30 H 1.08997 * 110.99984 * 82.57653 * 5 4 2 31 31 H 1.09001 * 111.00068 * 206.38595 * 5 4 2 32 32 H 1.09000 * 110.36209 * 155.85149 * 6 5 4 33 33 H 1.09000 * 110.36418 * 278.16894 * 6 5 4 34 34 H 1.07994 * 119.75351 * 359.97401 * 12 11 8 35 35 H 1.07995 * 119.87650 * 180.27307 * 13 12 11 36 36 H 1.07997 * 120.12884 * 179.70164 * 14 13 12 37 37 H 0.97009 * 119.99391 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.12921 * 0.02562 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7493 1.2429 5 6 3.2876 -1.5142 0.6927 6 6 2.8145 -1.8795 -0.7365 7 7 2.0301 -0.7142 -1.1838 8 16 1.7567 -0.2819 -2.7588 9 8 1.4701 1.1099 -2.7488 10 8 2.8117 -0.8528 -3.5205 11 6 0.2779 -1.0907 -3.2725 12 6 0.3442 -2.3494 -3.8502 13 6 -0.8114 -3.0000 -4.2538 14 6 -2.0382 -2.3965 -4.0950 15 6 -2.1170 -1.1170 -3.5152 16 6 -3.3718 -0.4870 -3.3476 17 1 -3.5006 0.2650 -2.5833 18 6 -4.4466 -0.8380 -4.1722 19 7 -4.2289 -1.4682 -5.2977 20 14 -6.1921 -0.4067 -3.6655 21 1 -6.5846 0.8822 -4.2900 22 1 -7.1173 -1.4772 -4.1166 23 1 -6.2621 -0.2823 -2.1875 24 6 -0.9376 -0.4684 -3.1040 25 1 -0.3634 0.5195 0.8866 26 1 -0.3633 0.5082 -0.8932 27 1 -0.3633 -1.0276 0.0065 28 1 1.3050 -1.4458 1.6185 29 1 2.3528 -0.0458 2.0201 30 1 4.1654 -0.8688 0.6606 31 1 3.4855 -2.4105 1.2805 32 1 3.6717 -2.0340 -1.3918 33 1 2.1886 -2.7716 -0.7124 34 1 1.3030 -2.8283 -3.9830 35 1 -0.7485 -3.9821 -4.6986 36 1 -2.9369 -2.9031 -4.4145 37 1 -4.9740 -1.7111 -5.8695 38 1 -0.9865 0.5140 -2.6582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619488028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:57 Heat of formation + Delta-G solvation = -61.740957 kcal Electronic energy + Delta-G solvation = -22256.879836 eV Core-core repulsion = 18997.510312 eV Total energy + Delta-G solvation = -3259.369524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.59868 -37.63585 -36.67722 -35.27467 -33.84055 -31.26112 -30.79146 -30.06371 -29.76366 -25.58806 -25.44023 -22.06737 -21.68524 -20.99126 -20.92774 -18.49399 -17.98599 -16.94809 -16.21483 -15.84663 -15.31160 -14.87356 -14.69056 -13.88905 -13.57354 -13.48806 -13.38590 -13.31082 -12.97526 -12.62794 -12.23394 -11.89942 -11.65206 -11.57035 -11.52116 -11.39641 -11.33528 -11.26807 -11.09960 -11.02295 -10.87953 -10.69496 -10.60669 -10.56451 -9.77394 -9.60188 -9.34148 -8.72061 -8.00959 -7.69165 -6.91946 -4.52833 0.97919 2.21482 2.63756 2.99802 3.01854 3.07960 3.53039 3.82898 4.28865 4.42491 4.47692 4.61352 4.91026 5.06520 5.26715 5.39922 5.42774 5.50157 5.68300 5.70815 5.80549 5.88875 5.90610 6.01760 6.12945 6.16095 6.22246 6.44894 6.51310 6.62534 6.71514 6.77308 6.93389 7.05323 7.22844 7.39339 7.73201 7.80564 7.94662 8.40306 8.67481 8.72311 10.03789 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.005117 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.758154 B = 5470.177647 C = 5994.115659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.150 3.850 3 H 0.077 0.923 4 C -0.124 4.124 5 C -0.129 4.129 6 C 0.117 3.883 7 N -1.010 6.010 8 S 2.701 3.299 9 O -0.967 6.967 10 O -0.973 6.973 11 C -0.631 4.631 12 C -0.146 4.146 13 C -0.121 4.121 14 C -0.118 4.118 15 C 0.092 3.908 16 C -0.461 4.461 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.123 4.123 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.283 0.717 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.417 -1.645 10.810 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.044 3.956 3 H 0.095 0.905 4 C -0.163 4.163 5 C -0.168 4.168 6 C -0.009 4.009 7 N -0.847 5.847 8 S 2.799 3.201 9 O -0.958 6.958 10 O -0.964 6.964 11 C -0.723 4.723 12 C -0.168 4.168 13 C -0.141 4.141 14 C -0.138 4.138 15 C 0.088 3.912 16 C -0.490 4.490 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.145 4.145 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.094 0.906 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.842 -1.126 10.015 12.770 hybrid contribution -1.579 -0.351 -0.013 1.618 sum 6.263 -1.477 10.002 11.893 Atomic orbital electron populations 1.22469 0.94652 1.03397 1.03438 1.21283 0.94280 0.95747 0.84323 0.90514 1.22715 0.97659 0.99410 0.96519 1.22753 0.98003 1.00611 0.95445 1.21979 0.94934 0.88257 0.95691 1.58797 1.65531 1.38477 1.21919 1.01330 0.74385 0.73484 0.70891 1.93516 1.86111 1.30450 1.85701 1.93495 1.55071 1.79801 1.68022 1.29812 1.16606 1.08591 1.17279 1.20070 0.97596 0.94388 1.04697 1.20805 0.93365 0.98710 1.01180 1.21632 0.96489 0.94872 1.00784 1.17674 0.92182 0.91169 0.90132 1.19583 0.93733 1.19977 1.15692 0.89989 1.25932 1.01770 0.93158 0.93443 1.69788 1.34276 1.30025 1.07808 0.86255 0.80857 0.79028 0.80399 1.19399 1.19962 1.18303 1.20738 0.90834 0.98084 1.04803 0.91371 0.91084 0.91428 0.90422 0.90465 0.90805 0.90215 0.90183 0.91528 0.87730 0.88423 0.85800 0.90581 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.04 37.16 0.34 -2.28 16 2 C 0.15 2.02 3.45 -66.95 -0.23 1.79 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.12 -1.22 6.48 -24.89 -0.16 -1.39 16 5 C -0.13 -1.22 7.09 -24.58 -0.17 -1.40 16 6 C 0.12 1.48 7.10 -2.53 -0.02 1.46 16 7 N -1.01 -15.81 3.40 -104.42 -0.35 -16.17 16 8 S 2.70 53.75 5.51 -107.50 -0.59 53.16 16 9 O -0.97 -21.21 16.67 -57.17 -0.95 -22.16 16 10 O -0.97 -20.83 16.58 -57.17 -0.95 -21.77 16 11 C -0.63 -14.09 5.97 -39.66 -0.24 -14.33 16 12 C -0.15 -3.24 9.53 -39.29 -0.37 -3.62 16 13 C -0.12 -2.75 10.02 -39.66 -0.40 -3.15 16 14 C -0.12 -2.95 8.70 -38.87 -0.34 -3.28 16 15 C 0.09 2.37 5.57 -106.82 -0.60 1.77 16 16 C -0.46 -11.76 9.05 -37.74 -0.34 -12.10 16 17 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 18 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 19 N -0.79 -19.87 10.97 55.55 0.61 -19.26 16 20 Si 0.91 18.01 29.59 -169.99 -5.03 12.97 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 24 C -0.12 -2.96 8.20 -38.87 -0.32 -3.28 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.21 5.16 -51.93 -0.27 0.94 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 0.73 7.85 -51.92 -0.41 0.32 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.00 7.78 -51.93 -0.40 0.60 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 2.11 7.59 -52.49 -0.40 1.71 16 35 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 37 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 38 H 0.11 2.58 6.14 -52.49 -0.32 2.26 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -30.15 321.32 -10.42 -40.57 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.06 Total: 5.90 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: -2.94 Total: -38.07 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.25 Total: -35.43 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -1.90 Total: -43.94 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -0.59 Total: 53.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.15 -10.42 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.170 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds