Wall clock time and date at job start Tue Mar 31 2020 07:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.99885 * 2 1 4 4 C 1.54326 * 109.87919 * 121.08500 * 2 1 3 5 5 C 1.55165 * 102.93875 * 141.61007 * 4 2 1 6 6 C 1.54910 * 101.58180 * 324.50102 * 5 4 2 7 7 N 1.47023 * 109.88682 * 238.89543 * 2 1 3 8 8 S 1.65600 * 125.64577 * 61.60843 * 7 2 1 9 9 O 1.42098 * 106.40130 * 23.55690 * 8 7 2 10 10 O 1.42100 * 106.39970 * 156.47987 * 8 7 2 11 11 C 1.76204 * 107.21785 * 270.01854 * 8 7 2 12 12 C 1.38657 * 119.87196 * 269.72899 * 11 8 7 13 13 C 1.38620 * 120.49831 * 179.72044 * 12 11 8 14 14 C 1.37640 * 120.24632 * 0.55539 * 13 12 11 15 15 C 1.40701 * 119.74647 * 359.72100 * 14 13 12 16 16 C 1.41394 * 120.24558 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99802 * 155.30518 * 16 15 14 18 18 C 1.39947 * 119.99906 * 335.30338 * 16 15 14 19 19 N 1.30819 * 119.99689 * 342.23286 * 18 16 15 20 20 Si 1.86800 * 119.99694 * 162.22678 * 18 16 15 21 21 H 1.48504 * 109.46817 * 94.66864 * 20 18 16 22 22 H 1.48504 * 109.46940 * 214.66206 * 20 18 16 23 23 H 1.48492 * 109.47392 * 334.66473 * 20 18 16 24 24 C 1.37594 * 119.87526 * 90.00197 * 11 8 7 25 25 H 1.08996 * 109.47650 * 300.36556 * 1 2 3 26 26 H 1.08998 * 109.46735 * 60.36462 * 1 2 3 27 27 H 1.08997 * 109.47237 * 180.36082 * 1 2 3 28 28 H 1.09009 * 110.72032 * 23.25323 * 4 2 1 29 29 H 1.08992 * 110.72533 * 259.97473 * 4 2 1 30 30 H 1.08997 * 110.99984 * 82.57653 * 5 4 2 31 31 H 1.09001 * 111.00068 * 206.38595 * 5 4 2 32 32 H 1.09000 * 110.36209 * 155.85149 * 6 5 4 33 33 H 1.09000 * 110.36418 * 278.16894 * 6 5 4 34 34 H 1.07994 * 119.75351 * 359.97401 * 12 11 8 35 35 H 1.07995 * 119.87650 * 180.27307 * 13 12 11 36 36 H 1.07997 * 120.12884 * 179.70164 * 14 13 12 37 37 H 0.97009 * 119.99391 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.12921 * 0.02562 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7493 1.2429 5 6 3.2876 -1.5142 0.6927 6 6 2.8145 -1.8795 -0.7365 7 7 2.0301 -0.7142 -1.1838 8 16 1.7567 -0.2819 -2.7588 9 8 1.4701 1.1099 -2.7488 10 8 2.8117 -0.8528 -3.5205 11 6 0.2779 -1.0907 -3.2725 12 6 0.3442 -2.3494 -3.8502 13 6 -0.8114 -3.0000 -4.2538 14 6 -2.0382 -2.3965 -4.0950 15 6 -2.1170 -1.1170 -3.5152 16 6 -3.3718 -0.4870 -3.3476 17 1 -3.5006 0.2650 -2.5833 18 6 -4.4466 -0.8380 -4.1722 19 7 -4.2289 -1.4682 -5.2977 20 14 -6.1921 -0.4067 -3.6655 21 1 -6.5846 0.8822 -4.2900 22 1 -7.1173 -1.4772 -4.1166 23 1 -6.2621 -0.2823 -2.1875 24 6 -0.9376 -0.4684 -3.1040 25 1 -0.3634 0.5195 0.8866 26 1 -0.3633 0.5082 -0.8932 27 1 -0.3633 -1.0276 0.0065 28 1 1.3050 -1.4458 1.6185 29 1 2.3528 -0.0458 2.0201 30 1 4.1654 -0.8688 0.6606 31 1 3.4855 -2.4105 1.2805 32 1 3.6717 -2.0340 -1.3918 33 1 2.1886 -2.7716 -0.7124 34 1 1.3030 -2.8283 -3.9830 35 1 -0.7485 -3.9821 -4.6986 36 1 -2.9369 -2.9031 -4.4145 37 1 -4.9740 -1.7111 -5.8695 38 1 -0.9865 0.5140 -2.6582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619488028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:56 Heat of formation + Delta-G solvation = -80.443694 kcal Electronic energy + Delta-G solvation = -22257.690848 eV Core-core repulsion = 18997.510312 eV Total energy + Delta-G solvation = -3260.180536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.64632 -39.44729 -38.34706 -36.95946 -35.68408 -32.36258 -31.90422 -31.84461 -31.53401 -27.36523 -26.57417 -23.73052 -22.98136 -22.69301 -21.94543 -20.14180 -19.48721 -18.43264 -17.78191 -17.24310 -16.99784 -16.55539 -16.28823 -15.32798 -15.15752 -14.92381 -14.65067 -14.45249 -14.32561 -13.97666 -13.70352 -13.40894 -13.26955 -13.20965 -13.09587 -13.06902 -12.87137 -12.66573 -12.60962 -12.47195 -12.20860 -11.95645 -11.67931 -11.52608 -11.49188 -11.36166 -11.14897 -9.99520 -9.82061 -9.57284 -8.74224 -6.46098 -0.58537 0.39035 0.82757 1.36551 1.43627 1.52099 2.06742 2.17165 2.54601 2.75481 3.23856 3.49395 3.64006 3.89243 4.06849 4.25265 4.30450 4.40045 4.43481 4.55961 4.65449 4.76512 4.82540 4.87935 4.95139 5.01265 5.06759 5.07779 5.18359 5.18655 5.28151 5.35863 5.39718 5.50182 5.54222 5.62135 5.86472 5.91975 6.08403 6.50851 6.78534 6.83166 8.24159 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.005117 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.758154 B = 5470.177647 C = 5994.115659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.139 3.861 3 H 0.079 0.921 4 C -0.115 4.115 5 C -0.118 4.118 6 C 0.101 3.899 7 N -1.007 6.007 8 S 2.723 3.277 9 O -0.992 6.992 10 O -0.988 6.988 11 C -0.639 4.639 12 C -0.150 4.150 13 C -0.122 4.122 14 C -0.141 4.141 15 C 0.064 3.936 16 C -0.495 4.495 17 H 0.081 0.919 18 C 0.036 3.964 19 N -0.825 5.825 20 Si 0.984 3.016 21 H -0.264 1.264 22 H -0.264 1.264 23 H -0.256 1.256 24 C -0.136 4.136 25 H 0.094 0.906 26 H 0.038 0.962 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.292 0.708 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 -2.184 12.776 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.023 4.023 7 N -0.847 5.847 8 S 2.819 3.181 9 O -0.982 6.982 10 O -0.979 6.979 11 C -0.728 4.728 12 C -0.171 4.171 13 C -0.141 4.141 14 C -0.161 4.161 15 C 0.060 3.940 16 C -0.524 4.524 17 H 0.099 0.901 18 C -0.179 4.179 19 N -0.451 5.451 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.188 1.188 23 H -0.179 1.179 24 C -0.157 4.157 25 H 0.113 0.887 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.564 -1.685 11.959 14.805 hybrid contribution -1.674 -0.200 -0.587 1.785 sum 6.890 -1.885 11.372 13.429 Atomic orbital electron populations 1.22481 0.95759 1.02725 1.03117 1.21605 0.93512 0.96453 0.85079 0.90328 1.22733 0.97852 0.99748 0.95040 1.22782 0.97877 1.01957 0.93098 1.22361 0.94703 0.87318 0.97933 1.58537 1.65524 1.39837 1.20796 1.00542 0.73145 0.72581 0.71837 1.93476 1.86202 1.31924 1.86636 1.93466 1.54848 1.79930 1.69611 1.30299 1.17424 1.08679 1.16430 1.20417 0.98410 0.94396 1.03890 1.21124 0.92701 0.99839 1.00442 1.21638 0.97122 0.95073 1.02267 1.18039 0.93085 0.91929 0.90918 1.19847 0.94844 1.21062 1.16690 0.90126 1.26790 1.05612 0.92638 0.92896 1.69831 1.35905 1.30692 1.08645 0.85156 0.75373 0.78999 0.80016 1.18909 1.18786 1.17931 1.20776 0.91256 0.98243 1.05375 0.88738 0.94342 0.92277 0.89650 0.87756 0.89891 0.87306 0.90201 0.91001 0.85491 0.85567 0.86855 0.89747 0.87304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.19 9.04 71.98 0.65 -4.54 16 2 C 0.14 3.50 3.45 45.34 0.16 3.66 16 3 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.11 -1.84 6.48 31.79 0.21 -1.63 16 5 C -0.12 -1.77 7.09 31.99 0.23 -1.54 16 6 C 0.10 2.32 7.10 86.86 0.62 2.93 16 7 N -1.01 -30.31 3.40 -484.28 -1.65 -31.96 16 8 S 2.72 108.35 5.51 -56.49 -0.31 108.04 16 9 O -0.99 -44.20 16.67 -128.00 -2.13 -46.34 16 10 O -0.99 -41.69 16.58 -128.00 -2.12 -43.81 16 11 C -0.64 -29.01 5.97 22.22 0.13 -28.87 16 12 C -0.15 -6.64 9.53 22.46 0.21 -6.43 16 13 C -0.12 -5.55 10.02 22.22 0.22 -5.33 16 14 C -0.14 -7.27 8.70 22.73 0.20 -7.08 16 15 C 0.06 3.41 5.57 -21.29 -0.12 3.29 16 16 C -0.50 -26.30 9.05 23.46 0.21 -26.08 16 17 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 18 C 0.04 1.77 5.14 85.26 0.44 2.21 16 19 N -0.83 -42.27 10.97 21.83 0.24 -42.03 16 20 Si 0.98 37.18 29.59 68.60 2.03 39.21 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 24 C -0.14 -6.77 8.20 22.73 0.19 -6.59 16 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.34 5.16 -2.39 -0.01 1.33 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.28 7.85 -2.38 -0.02 1.26 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.83 7.78 -2.39 -0.02 1.81 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.13 4.97 7.59 -2.91 -0.02 4.94 16 35 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.11 5.97 6.18 -2.91 -0.02 5.96 16 37 H 0.29 13.41 8.30 -92.70 -0.77 12.64 16 38 H 0.11 5.34 6.14 -2.91 -0.02 5.33 16 Total: -1.00 -66.93 321.32 0.46 -66.46 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 1.06 Total: 26.42 kcal Atomic # 6 Polarization: -79.34 SS G_CDS: 3.34 Total: -75.99 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -1.41 Total: -73.99 kcal Atomic # 8 Polarization: -85.89 SS G_CDS: -4.26 Total: -90.15 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 16 Polarization: 108.35 SS G_CDS: -0.31 Total: 108.04 kcal Total: -66.93 0.46 -66.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.979 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds