Wall clock time and date at job start Tue Mar 31 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50695 * 119.99632 * 2 1 4 4 C 1.50700 * 120.00011 * 179.97438 * 2 1 3 5 5 N 1.46503 * 109.46652 * 95.68555 * 4 2 1 6 6 C 1.46497 * 120.00101 * 83.90794 * 5 4 2 7 7 S 1.65607 * 119.99781 * 263.90456 * 5 4 2 8 8 O 1.42103 * 106.40188 * 160.68794 * 7 5 4 9 9 O 1.42101 * 106.40146 * 27.76840 * 7 5 4 10 10 C 1.76200 * 107.21872 * 274.22658 * 7 5 4 11 11 C 1.38657 * 119.88032 * 275.42227 * 10 7 5 12 12 C 1.38606 * 120.50061 * 180.25608 * 11 10 7 13 13 C 1.37635 * 120.25183 * 359.44441 * 12 11 10 14 14 C 1.40701 * 119.74418 * 0.27483 * 13 12 11 15 15 C 1.41393 * 120.24480 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00195 * 207.04874 * 15 14 13 17 17 C 1.39949 * 119.99682 * 27.05766 * 15 14 13 18 18 N 1.30823 * 120.00284 * 12.41372 * 17 15 14 19 19 Si 1.86800 * 119.99580 * 192.42165 * 17 15 14 20 20 H 1.48495 * 109.47483 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47343 * 119.99941 * 19 17 15 22 22 H 1.48502 * 109.46783 * 239.99594 * 19 17 15 23 23 C 1.37603 * 119.87124 * 95.12202 * 10 7 5 24 24 H 1.08000 * 119.99861 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47312 * 275.00303 * 3 2 1 27 27 H 1.08998 * 109.47886 * 35.00411 * 3 2 1 28 28 H 1.09003 * 109.46960 * 155.00894 * 3 2 1 29 29 H 1.08997 * 109.46842 * 335.68653 * 4 2 1 30 30 H 1.08998 * 109.47088 * 215.68351 * 4 2 1 31 31 H 1.08998 * 109.46910 * 269.99713 * 6 5 4 32 32 H 1.08997 * 109.47082 * 30.00020 * 6 5 4 33 33 H 1.08997 * 109.46950 * 149.99920 * 6 5 4 34 34 H 1.08003 * 119.74118 * 359.97438 * 11 10 7 35 35 H 1.08008 * 119.87290 * 179.71720 * 12 11 10 36 36 H 1.07995 * 120.12828 * 180.25076 * 13 12 11 37 37 H 0.96996 * 119.99745 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.13100 * 0.04915 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4262 -1.6601 -1.3737 6 6 3.6350 -1.0978 -1.9809 7 16 1.4696 -2.6972 -2.2409 8 8 1.7948 -2.4938 -3.6092 9 8 0.1531 -2.5546 -1.7254 10 6 1.9842 -4.3353 -1.8454 11 6 3.0510 -4.9067 -2.5223 12 6 3.4631 -6.1963 -2.2253 13 6 2.8233 -6.9203 -1.2451 14 6 1.7432 -6.3487 -0.5477 15 6 1.0779 -7.0832 0.4608 16 1 0.0428 -6.8744 0.6871 17 6 1.7610 -8.0806 1.1659 18 7 3.0625 -8.1739 1.0717 19 14 0.8141 -9.2790 2.2415 20 1 -0.6353 -8.9625 2.1779 21 1 1.0405 -10.6643 1.7570 22 1 1.2847 -9.1624 3.6452 23 6 1.3297 -5.0406 -0.8617 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 2.1675 1.6646 -1.0238 27 1 1.5162 2.0407 0.5895 28 1 3.0518 1.1541 0.4342 29 1 1.4342 -2.0878 0.4240 30 1 2.9681 -1.2021 0.6000 31 1 3.3883 -0.1615 -2.4815 32 1 4.3777 -0.9104 -1.2054 33 1 4.0384 -1.8030 -2.7075 34 1 3.5616 -4.3441 -3.2899 35 1 4.2924 -6.6330 -2.7620 36 1 3.1487 -7.9235 -1.0125 37 1 3.5357 -8.8654 1.5601 38 1 0.5016 -4.5923 -0.3329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:58 Heat of formation + Delta-G solvation = -40.773019 kcal Electronic energy + Delta-G solvation = -21853.435224 eV Core-core repulsion = 18594.974938 eV Total energy + Delta-G solvation = -3258.460286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -37.65008 -37.31084 -36.65076 -35.25887 -33.84643 -33.77108 -30.07874 -29.79013 -27.94791 -26.82573 -25.49003 -24.47630 -21.83382 -21.00630 -18.98502 -18.44292 -17.67112 -17.01489 -16.00844 -15.85002 -15.26736 -14.93326 -14.59103 -14.32271 -13.95613 -13.48423 -13.38136 -13.30269 -13.02749 -12.59521 -12.56049 -11.92579 -11.89422 -11.69966 -11.61262 -11.38038 -11.36946 -11.31909 -11.20482 -10.97823 -10.93451 -10.92185 -10.59283 -9.76150 -9.61745 -9.40916 -9.06678 -8.76505 -8.03016 -7.68418 -6.89032 -4.55896 0.97626 2.17252 2.33898 2.61336 3.00531 3.04159 3.06521 3.57900 3.83479 4.29778 4.44468 4.85567 4.90061 4.95394 5.17007 5.39657 5.50646 5.58387 5.62816 5.66719 5.80290 5.86388 5.95478 6.02990 6.11749 6.13178 6.17649 6.63264 6.67534 6.76146 6.78091 6.93335 6.99081 7.05582 7.21325 7.36540 7.71252 7.81499 7.93867 8.40454 8.67356 8.71364 10.05684 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.004868 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.807377 B = 5750.562351 C = 6423.745188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.162 4.162 3 C -0.112 4.112 4 C 0.162 3.838 5 N -0.998 5.998 6 C 0.098 3.902 7 S 2.686 3.314 8 O -0.974 6.974 9 O -0.965 6.965 10 C -0.636 4.636 11 C -0.144 4.144 12 C -0.123 4.123 13 C -0.113 4.113 14 C 0.090 3.910 15 C -0.460 4.460 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.802 5.802 19 Si 0.913 3.087 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.273 1.273 23 C -0.123 4.123 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.282 0.718 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 10.926 0.158 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.169 4.169 4 C 0.037 3.963 5 N -0.834 5.834 6 C -0.048 4.048 7 S 2.783 3.217 8 O -0.965 6.965 9 O -0.956 6.956 10 C -0.727 4.727 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.133 4.133 14 C 0.087 3.913 15 C -0.490 4.490 16 H 0.101 0.899 17 C -0.144 4.144 18 N -0.427 5.427 19 Si 0.738 3.262 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.199 1.199 23 C -0.145 4.145 24 H 0.134 0.866 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.302 11.078 -0.319 11.159 hybrid contribution 0.244 -1.145 0.876 1.462 sum 1.546 9.933 0.557 10.068 Atomic orbital electron populations 1.24031 0.95468 1.02734 0.98325 1.22080 0.95779 0.96075 1.02404 1.20794 0.99874 0.94545 1.01689 1.20276 0.99559 0.94310 0.82168 1.57542 1.39576 1.61351 1.24961 1.21410 0.86263 0.98892 0.98188 1.01890 0.73134 0.73830 0.72874 1.93502 1.84676 1.86206 1.32069 1.93501 1.35097 1.86568 1.80421 1.29871 1.10138 1.21980 1.10724 1.20069 0.97866 0.97184 1.01388 1.20832 0.99747 0.94867 0.98826 1.21713 0.97660 0.99960 0.93958 1.17716 0.91871 0.90303 0.91449 1.19652 0.98916 1.14845 1.15544 0.89934 1.25922 0.94783 0.97108 0.96602 1.69754 1.07902 1.29593 1.35499 0.86165 0.80929 0.79844 0.79290 1.18269 1.19663 1.19864 1.20841 1.00662 0.95105 0.97875 0.86647 0.88784 0.91882 0.92170 0.92105 0.89194 0.90030 0.92987 0.91249 0.90920 0.87873 0.88350 0.85439 0.90718 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 13.51 29.01 0.39 -1.84 16 2 C -0.16 -2.07 5.62 -101.07 -0.57 -2.64 16 3 C -0.11 -1.12 10.02 36.00 0.36 -0.76 16 4 C 0.16 2.25 5.52 -5.19 -0.03 2.23 16 5 N -1.00 -15.36 3.17 -123.06 -0.39 -15.75 16 6 C 0.10 1.23 10.33 59.85 0.62 1.85 16 7 S 2.69 51.69 5.58 -107.50 -0.60 51.09 16 8 O -0.97 -20.34 16.35 -57.17 -0.93 -21.27 16 9 O -0.97 -19.89 14.89 -57.17 -0.85 -20.74 16 10 C -0.64 -14.00 5.96 -39.66 -0.24 -14.24 16 11 C -0.14 -3.15 9.53 -39.29 -0.37 -3.52 16 12 C -0.12 -2.78 10.02 -39.67 -0.40 -3.17 16 13 C -0.11 -2.82 8.67 -38.87 -0.34 -3.15 16 14 C 0.09 2.32 5.56 -106.82 -0.59 1.73 16 15 C -0.46 -11.76 9.07 -37.74 -0.34 -12.10 16 16 H 0.08 2.04 7.88 -52.49 -0.41 1.62 16 17 C 0.07 1.75 5.23 -17.34 -0.09 1.66 16 18 N -0.80 -19.76 10.82 55.55 0.60 -19.16 16 19 Si 0.91 18.04 29.58 -169.99 -5.03 13.02 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.12 -2.96 9.27 -38.87 -0.36 -3.32 16 24 H 0.12 1.74 7.03 -52.49 -0.37 1.37 16 25 H 0.09 1.05 8.05 -52.49 -0.42 0.63 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 29 H 0.09 1.34 7.52 -51.93 -0.39 0.95 16 30 H 0.08 0.96 7.92 -51.93 -0.41 0.54 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.70 7.95 -51.93 -0.41 0.28 16 33 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 34 H 0.10 2.02 7.73 -52.48 -0.41 1.61 16 35 H 0.10 1.93 8.06 -52.48 -0.42 1.50 16 36 H 0.13 3.23 6.15 -52.49 -0.32 2.91 16 37 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 38 H 0.11 2.57 7.50 -52.49 -0.39 2.18 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -29.53 334.21 -9.31 -38.84 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.18 Total: 6.21 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: -1.96 Total: -37.27 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.21 Total: -34.90 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.79 Total: -42.01 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.60 Total: 51.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.53 -9.31 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.935 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds