Wall clock time and date at job start Tue Mar 31 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50695 * 119.99632 * 2 1 4 4 C 1.50700 * 120.00011 * 179.97438 * 2 1 3 5 5 N 1.46503 * 109.46652 * 95.68555 * 4 2 1 6 6 C 1.46497 * 120.00101 * 83.90794 * 5 4 2 7 7 S 1.65607 * 119.99781 * 263.90456 * 5 4 2 8 8 O 1.42103 * 106.40188 * 160.68794 * 7 5 4 9 9 O 1.42101 * 106.40146 * 27.76840 * 7 5 4 10 10 C 1.76200 * 107.21872 * 274.22658 * 7 5 4 11 11 C 1.38657 * 119.88032 * 275.42227 * 10 7 5 12 12 C 1.38606 * 120.50061 * 180.25608 * 11 10 7 13 13 C 1.37635 * 120.25183 * 359.44441 * 12 11 10 14 14 C 1.40701 * 119.74418 * 0.27483 * 13 12 11 15 15 C 1.41393 * 120.24480 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00195 * 207.04874 * 15 14 13 17 17 C 1.39949 * 119.99682 * 27.05766 * 15 14 13 18 18 N 1.30823 * 120.00284 * 12.41372 * 17 15 14 19 19 Si 1.86800 * 119.99580 * 192.42165 * 17 15 14 20 20 H 1.48495 * 109.47483 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47343 * 119.99941 * 19 17 15 22 22 H 1.48502 * 109.46783 * 239.99594 * 19 17 15 23 23 C 1.37603 * 119.87124 * 95.12202 * 10 7 5 24 24 H 1.08000 * 119.99861 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47312 * 275.00303 * 3 2 1 27 27 H 1.08998 * 109.47886 * 35.00411 * 3 2 1 28 28 H 1.09003 * 109.46960 * 155.00894 * 3 2 1 29 29 H 1.08997 * 109.46842 * 335.68653 * 4 2 1 30 30 H 1.08998 * 109.47088 * 215.68351 * 4 2 1 31 31 H 1.08998 * 109.46910 * 269.99713 * 6 5 4 32 32 H 1.08997 * 109.47082 * 30.00020 * 6 5 4 33 33 H 1.08997 * 109.46950 * 149.99920 * 6 5 4 34 34 H 1.08003 * 119.74118 * 359.97438 * 11 10 7 35 35 H 1.08008 * 119.87290 * 179.71720 * 12 11 10 36 36 H 1.07995 * 120.12828 * 180.25076 * 13 12 11 37 37 H 0.96996 * 119.99745 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.13100 * 0.04915 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4262 -1.6601 -1.3737 6 6 3.6350 -1.0978 -1.9809 7 16 1.4696 -2.6972 -2.2409 8 8 1.7948 -2.4938 -3.6092 9 8 0.1531 -2.5546 -1.7254 10 6 1.9842 -4.3353 -1.8454 11 6 3.0510 -4.9067 -2.5223 12 6 3.4631 -6.1963 -2.2253 13 6 2.8233 -6.9203 -1.2451 14 6 1.7432 -6.3487 -0.5477 15 6 1.0779 -7.0832 0.4608 16 1 0.0428 -6.8744 0.6871 17 6 1.7610 -8.0806 1.1659 18 7 3.0625 -8.1739 1.0717 19 14 0.8141 -9.2790 2.2415 20 1 -0.6353 -8.9625 2.1779 21 1 1.0405 -10.6643 1.7570 22 1 1.2847 -9.1624 3.6452 23 6 1.3297 -5.0406 -0.8617 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 2.1675 1.6646 -1.0238 27 1 1.5162 2.0407 0.5895 28 1 3.0518 1.1541 0.4342 29 1 1.4342 -2.0878 0.4240 30 1 2.9681 -1.2021 0.6000 31 1 3.3883 -0.1615 -2.4815 32 1 4.3777 -0.9104 -1.2054 33 1 4.0384 -1.8030 -2.7075 34 1 3.5616 -4.3441 -3.2899 35 1 4.2924 -6.6330 -2.7620 36 1 3.1487 -7.9235 -1.0125 37 1 3.5357 -8.8654 1.5601 38 1 0.5016 -4.5923 -0.3329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619495295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:58 Heat of formation + Delta-G solvation = -58.156718 kcal Electronic energy + Delta-G solvation = -21854.189038 eV Core-core repulsion = 18594.974938 eV Total energy + Delta-G solvation = -3259.214100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.46424 -38.50941 -38.15656 -36.87757 -35.66256 -34.84363 -31.92099 -31.59547 -28.89787 -27.76947 -27.35168 -25.62648 -23.61600 -22.82388 -20.40472 -19.87628 -19.02780 -18.48785 -17.76121 -17.26978 -16.85336 -16.54269 -15.91414 -15.73916 -15.17709 -15.12101 -14.93653 -14.35728 -14.31368 -13.85498 -13.75397 -13.69479 -13.33605 -13.24204 -13.04548 -13.02505 -12.81798 -12.75787 -12.65862 -12.39375 -12.35563 -12.19773 -12.04115 -11.54622 -11.35478 -11.19340 -10.12951 -9.98585 -9.78486 -9.54680 -8.70026 -6.48178 -0.54623 0.38982 0.81807 1.26856 1.37534 1.44190 1.52154 2.16948 2.18191 2.58042 2.78834 3.40877 3.49639 3.78519 3.96400 4.18334 4.28162 4.39272 4.53462 4.66634 4.73245 4.80961 4.83218 4.89133 4.92013 4.97265 5.04058 5.05249 5.11933 5.19711 5.22182 5.39554 5.53563 5.63078 5.76210 5.86521 5.94039 6.01369 6.08974 6.51879 6.79582 6.83412 8.27098 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.004868 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.807377 B = 5750.562351 C = 6423.745188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.158 4.158 3 C -0.110 4.110 4 C 0.152 3.848 5 N -0.990 5.990 6 C 0.085 3.915 7 S 2.708 3.292 8 O -0.987 6.987 9 O -0.983 6.983 10 C -0.643 4.643 11 C -0.146 4.146 12 C -0.125 4.125 13 C -0.136 4.136 14 C 0.061 3.939 15 C -0.497 4.497 16 H 0.077 0.923 17 C 0.036 3.964 18 N -0.828 5.828 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.263 1.263 22 H -0.264 1.264 23 C -0.143 4.143 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.291 0.709 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 12.368 0.366 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.160 4.160 3 C -0.166 4.166 4 C 0.027 3.973 5 N -0.829 5.829 6 C -0.060 4.060 7 S 2.801 3.199 8 O -0.978 6.978 9 O -0.973 6.973 10 C -0.731 4.731 11 C -0.166 4.166 12 C -0.144 4.144 13 C -0.156 4.156 14 C 0.058 3.942 15 C -0.526 4.526 16 H 0.095 0.905 17 C -0.178 4.178 18 N -0.454 5.454 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.187 1.187 22 H -0.188 1.188 23 C -0.164 4.164 24 H 0.107 0.893 25 H 0.133 0.867 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.102 0.898 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.439 12.493 -0.122 12.730 hybrid contribution -0.037 -1.465 0.759 1.650 sum 2.401 11.029 0.637 11.305 Atomic orbital electron populations 1.24085 0.96042 1.02584 0.99528 1.22263 0.95652 0.96802 1.01302 1.20830 1.00405 0.92906 1.02480 1.20511 1.00787 0.94505 0.81488 1.57286 1.40307 1.59928 1.25391 1.21766 0.85588 0.99317 0.99281 1.01252 0.72974 0.73035 0.72598 1.93476 1.84967 1.86095 1.33219 1.93480 1.36699 1.86467 1.80689 1.30398 1.09422 1.23908 1.09410 1.20470 0.97615 0.97092 1.01452 1.21172 1.00072 0.95087 0.98060 1.21712 0.98485 1.00017 0.95387 1.18074 0.92726 0.91272 0.92136 1.19874 0.99076 1.16799 1.16895 0.90483 1.26721 0.95568 0.98062 0.97497 1.69789 1.09103 1.30298 1.36204 0.85110 0.79202 0.77499 0.77660 1.18439 1.18717 1.18814 1.20902 1.01335 0.94996 0.99156 0.89304 0.86650 0.91278 0.90845 0.90531 0.91185 0.87247 0.91253 0.88187 0.91230 0.85164 0.85407 0.86584 0.89826 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.77 13.51 67.77 0.92 -3.85 16 2 C -0.16 -3.75 5.62 -16.50 -0.09 -3.84 16 3 C -0.11 -1.81 10.02 71.23 0.71 -1.09 16 4 C 0.15 3.99 5.52 85.63 0.47 4.47 16 5 N -0.99 -28.68 3.17 -543.24 -1.72 -30.40 16 6 C 0.08 1.85 10.33 127.77 1.32 3.17 16 7 S 2.71 102.73 5.58 -56.49 -0.32 102.42 16 8 O -0.99 -39.90 16.35 -128.00 -2.09 -41.99 16 9 O -0.98 -41.08 14.89 -128.00 -1.91 -42.99 16 10 C -0.64 -28.45 5.96 22.22 0.13 -28.32 16 11 C -0.15 -6.24 9.53 22.46 0.21 -6.03 16 12 C -0.12 -5.58 10.02 22.22 0.22 -5.36 16 13 C -0.14 -6.96 8.67 22.73 0.20 -6.77 16 14 C 0.06 3.27 5.56 -21.29 -0.12 3.15 16 15 C -0.50 -26.46 9.07 23.46 0.21 -26.25 16 16 H 0.08 4.01 7.88 -2.91 -0.02 3.98 16 17 C 0.04 1.77 5.23 85.26 0.45 2.21 16 18 N -0.83 -41.52 10.82 21.83 0.24 -41.29 16 19 Si 0.98 37.30 29.58 68.60 2.03 39.33 16 20 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 23 C -0.14 -7.09 9.27 22.73 0.21 -6.88 16 24 H 0.09 2.77 7.03 -2.91 -0.02 2.75 16 25 H 0.12 2.42 8.05 -2.91 -0.02 2.39 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 28 H 0.08 1.03 8.04 -2.39 -0.02 1.01 16 29 H 0.07 2.12 7.52 -2.39 -0.02 2.10 16 30 H 0.11 2.26 7.92 -2.39 -0.02 2.24 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.59 7.95 -2.39 -0.02 1.57 16 33 H 0.07 1.58 7.68 -2.39 -0.02 1.57 16 34 H 0.13 4.81 7.73 -2.91 -0.02 4.78 16 35 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.12 6.09 6.15 -2.91 -0.02 6.07 16 37 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 38 H 0.11 5.34 7.50 -2.91 -0.02 5.32 16 Total: -1.00 -64.86 334.21 2.12 -62.74 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 1.05 Total: 27.56 kcal Atomic # 6 Polarization: -80.23 SS G_CDS: 4.85 Total: -75.38 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.49 Total: -71.68 kcal Atomic # 8 Polarization: -80.98 SS G_CDS: -4.00 Total: -84.98 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Atomic # 16 Polarization: 102.73 SS G_CDS: -0.32 Total: 102.42 kcal Total: -64.86 2.12 -62.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.583 kcal (2) G-P(sol) polarization free energy of solvation -64.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds