Wall clock time and date at job start Tue Mar 31 2020 06:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50701 * 120.00011 * 2 1 4 4 C 1.31001 * 119.99916 * 179.97438 * 2 1 3 5 5 C 1.50700 * 120.00307 * 354.30485 * 4 2 1 6 6 N 1.46495 * 109.47145 * 236.14735 * 5 4 2 7 7 S 1.65602 * 120.00043 * 165.00044 * 6 5 4 8 8 O 1.42100 * 106.40264 * 311.45625 * 7 6 5 9 9 O 1.42102 * 106.40222 * 178.53946 * 7 6 5 10 10 C 1.76196 * 107.21871 * 64.99913 * 7 6 5 11 11 C 1.38665 * 119.87125 * 270.25292 * 10 7 6 12 12 C 1.38617 * 120.49371 * 180.30301 * 11 10 7 13 13 C 1.37638 * 120.25371 * 359.44150 * 12 11 10 14 14 C 1.40694 * 119.73896 * 0.28199 * 13 12 11 15 15 C 1.41407 * 120.24075 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99934 * 206.48350 * 15 14 13 17 17 C 1.39940 * 119.99759 * 26.48228 * 15 14 13 18 18 N 1.30821 * 120.00450 * 19.54190 * 17 15 14 19 19 Si 1.86800 * 119.99649 * 199.54446 * 17 15 14 20 20 H 1.48506 * 109.47393 * 94.96579 * 19 17 15 21 21 H 1.48502 * 109.47240 * 214.96742 * 19 17 15 22 22 H 1.48498 * 109.47296 * 334.96707 * 19 17 15 23 23 C 1.37595 * 119.88027 * 89.99955 * 10 7 6 24 24 H 1.08990 * 109.47516 * 264.77037 * 1 2 3 25 25 H 1.09002 * 109.47254 * 24.77447 * 1 2 3 26 26 H 1.09011 * 109.46887 * 144.77002 * 1 2 3 27 27 H 1.09001 * 109.47337 * 269.99628 * 3 2 1 28 28 H 1.08993 * 109.46971 * 29.99785 * 3 2 1 29 29 H 1.09000 * 109.46899 * 149.99926 * 3 2 1 30 30 H 1.08007 * 120.00016 * 174.30471 * 4 2 1 31 31 H 1.09002 * 109.47007 * 116.14504 * 5 4 2 32 32 H 1.08996 * 109.46551 * 356.14542 * 5 4 2 33 33 H 0.97003 * 120.00379 * 344.99671 * 6 5 4 34 34 H 1.08002 * 119.75479 * 0.04370 * 11 10 7 35 35 H 1.07999 * 119.86800 * 179.72378 * 12 11 10 36 36 H 1.07992 * 120.12834 * 180.25129 * 13 12 11 37 37 H 0.97000 * 120.00110 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.12214 * 0.02562 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4141 -2.4364 0.1306 6 7 1.9350 -3.1864 1.2761 7 16 1.0776 -4.4641 1.8884 8 8 -0.2589 -4.0094 2.0509 9 8 1.8533 -4.9938 2.9546 10 6 1.0319 -5.7074 0.6407 11 6 0.0007 -5.7180 -0.2863 12 6 -0.0513 -6.6938 -1.2694 13 6 0.9287 -7.6575 -1.3425 14 6 1.9828 -7.6530 -0.4106 15 6 2.9949 -8.6384 -0.4755 16 1 3.5354 -8.9170 0.4170 17 6 3.2962 -9.2525 -1.6964 18 7 2.9446 -8.6822 -2.8200 19 14 4.2005 -10.8869 -1.7215 20 1 3.2167 -11.9957 -1.8105 21 1 5.1064 -10.9333 -2.8973 22 1 4.9974 -11.0309 -0.4768 23 6 2.0224 -6.6610 0.5867 24 1 -0.3634 -0.0937 1.0233 25 1 -0.3634 0.9331 -0.4306 26 1 -0.3633 -0.8395 -0.5929 27 1 2.4422 1.6198 -1.0277 28 1 1.6714 2.0647 0.5138 29 1 3.2129 1.1747 0.5138 30 1 3.2380 -1.1369 -0.0923 31 1 1.5457 -3.0234 -0.7784 32 1 0.3540 -2.2328 0.2813 33 1 2.7822 -2.9348 1.6759 34 1 -0.7700 -4.9628 -0.2394 35 1 -0.8615 -6.6952 -1.9836 36 1 0.8884 -8.4144 -2.1117 37 1 3.1531 -9.1081 -3.6661 38 1 2.8265 -6.6486 1.3075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:20 Heat of formation + Delta-G solvation = -55.336084 kcal Electronic energy + Delta-G solvation = -21195.182814 eV Core-core repulsion = 17936.091026 eV Total energy + Delta-G solvation = -3259.091788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.65437 -37.40404 -36.59039 -35.28523 -34.07436 -33.82832 -30.08365 -29.81433 -28.55497 -27.73748 -25.48565 -23.72346 -21.90664 -20.99300 -19.22713 -18.27726 -17.79164 -16.76383 -16.07294 -15.88664 -15.23503 -15.11705 -14.70027 -14.44664 -14.16786 -13.74737 -13.44962 -13.35133 -12.85386 -12.58826 -12.53758 -12.19078 -11.92860 -11.86447 -11.59828 -11.55206 -11.42782 -11.39496 -11.38018 -11.02187 -10.89278 -10.82330 -10.61004 -9.79601 -9.68926 -9.35116 -9.19659 -8.76817 -8.05345 -7.70302 -6.94671 -4.53652 1.01689 2.03407 2.20027 2.62722 3.00133 3.04786 3.06028 3.67805 3.83229 4.25301 4.43652 4.65205 4.82899 5.01880 5.21750 5.33488 5.37890 5.40226 5.44018 5.60547 5.68607 5.77202 5.86831 5.92439 6.02972 6.14830 6.17816 6.54953 6.64588 6.73224 6.79031 6.84494 7.02211 7.20060 7.27422 7.37679 7.70166 7.80258 7.92883 8.39402 8.66066 8.71326 10.02503 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.003978 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.137999 B = 7036.833635 C = 7402.006341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 C -0.117 4.117 4 C -0.172 4.172 5 C 0.144 3.856 6 N -1.117 6.117 7 S 2.690 3.310 8 O -0.976 6.976 9 O -0.973 6.973 10 C -0.632 4.632 11 C -0.149 4.149 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.094 3.906 15 C -0.464 4.464 16 H 0.084 0.916 17 C 0.077 3.923 18 N -0.793 5.793 19 Si 0.910 3.090 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.260 1.260 23 C -0.122 4.122 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.413 0.587 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.283 0.717 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 12.623 0.776 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 C -0.174 4.174 4 C -0.192 4.192 5 C 0.019 3.981 6 N -0.874 5.874 7 S 2.786 3.214 8 O -0.966 6.966 9 O -0.964 6.964 10 C -0.723 4.723 11 C -0.171 4.171 12 C -0.139 4.139 13 C -0.138 4.138 14 C 0.090 3.910 15 C -0.494 4.494 16 H 0.102 0.898 17 C -0.141 4.141 18 N -0.418 5.418 19 Si 0.734 3.266 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.144 4.144 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.502 12.534 1.287 12.689 hybrid contribution 1.055 -0.994 -0.851 1.680 sum -0.447 11.540 0.436 11.557 Atomic orbital electron populations 1.20974 0.92200 1.02551 1.02762 1.21693 0.96037 0.94965 0.99323 1.20841 0.99678 0.94843 1.02025 1.22666 0.99942 0.93128 1.03431 1.20325 0.97987 0.90988 0.88829 1.55529 1.37427 1.48654 1.45828 1.01610 0.72951 0.72914 0.73934 1.93503 1.36199 1.81112 1.85759 1.93536 1.71245 1.78887 1.52691 1.29767 1.05732 1.17721 1.19120 1.20086 0.98235 1.01665 0.97072 1.20796 0.98695 0.96460 0.97961 1.21527 0.92947 0.98605 1.00679 1.17676 0.91966 0.90787 0.90545 1.19622 1.16826 1.17687 0.95232 0.89828 1.25914 0.94869 0.98423 0.94916 1.69794 1.37091 1.36114 0.98809 0.86259 0.79631 0.81635 0.79051 1.19217 1.20203 1.18362 1.20807 0.97151 0.95034 1.01374 0.90958 0.91862 0.91026 0.91521 0.91739 0.91834 0.86652 0.90735 0.89694 0.75332 0.87575 0.88360 0.86267 0.90594 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.93 36.00 0.32 -0.93 16 2 C -0.12 -1.22 6.05 -101.07 -0.61 -1.83 16 3 C -0.12 -0.94 10.00 36.01 0.36 -0.58 16 4 C -0.17 -1.96 9.24 -36.03 -0.33 -2.30 16 5 C 0.14 1.97 6.30 -5.20 -0.03 1.93 16 6 N -1.12 -16.62 5.99 -11.66 -0.07 -16.69 16 7 S 2.69 50.78 5.73 -107.50 -0.62 50.17 16 8 O -0.98 -19.83 16.74 -57.17 -0.96 -20.78 16 9 O -0.97 -20.61 17.27 -57.17 -0.99 -21.59 16 10 C -0.63 -13.78 5.94 -39.66 -0.24 -14.02 16 11 C -0.15 -3.21 9.53 -39.28 -0.37 -3.59 16 12 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 13 C -0.12 -2.92 8.69 -38.87 -0.34 -3.26 16 14 C 0.09 2.42 5.54 -106.82 -0.59 1.83 16 15 C -0.46 -11.94 9.03 -37.74 -0.34 -12.28 16 16 H 0.08 2.08 7.92 -52.49 -0.42 1.66 16 17 C 0.08 1.86 5.08 -17.34 -0.09 1.77 16 18 N -0.79 -19.58 11.20 55.55 0.62 -18.96 16 19 Si 0.91 18.05 29.60 -169.99 -5.03 13.02 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 C -0.12 -2.95 9.26 -38.88 -0.36 -3.31 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.07 0.72 6.64 -51.92 -0.34 0.37 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.06 0.48 8.06 -51.93 -0.42 0.07 16 30 H 0.12 1.19 8.05 -52.48 -0.42 0.77 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.15 5.30 -51.93 -0.28 0.87 16 33 H 0.41 5.23 8.64 -34.47 -0.30 4.93 16 34 H 0.11 2.04 7.61 -52.49 -0.40 1.64 16 35 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.12 2.99 6.38 -52.49 -0.33 2.66 16 37 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 38 H 0.11 2.59 7.60 -52.49 -0.40 2.19 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -30.19 334.68 -9.99 -40.19 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.97 Total: 9.23 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: -3.02 Total: -39.61 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.55 Total: -35.65 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.94 Total: -42.38 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 50.78 SS G_CDS: -0.62 Total: 50.17 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.19 -9.99 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.150 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds