Wall clock time and date at job start Tue Mar 31 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50701 * 120.00011 * 2 1 4 4 C 1.31001 * 119.99916 * 179.97438 * 2 1 3 5 5 C 1.50700 * 120.00307 * 354.30485 * 4 2 1 6 6 N 1.46495 * 109.47145 * 236.14735 * 5 4 2 7 7 S 1.65602 * 120.00043 * 165.00044 * 6 5 4 8 8 O 1.42100 * 106.40264 * 311.45625 * 7 6 5 9 9 O 1.42102 * 106.40222 * 178.53946 * 7 6 5 10 10 C 1.76196 * 107.21871 * 64.99913 * 7 6 5 11 11 C 1.38665 * 119.87125 * 270.25292 * 10 7 6 12 12 C 1.38617 * 120.49371 * 180.30301 * 11 10 7 13 13 C 1.37638 * 120.25371 * 359.44150 * 12 11 10 14 14 C 1.40694 * 119.73896 * 0.28199 * 13 12 11 15 15 C 1.41407 * 120.24075 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99934 * 206.48350 * 15 14 13 17 17 C 1.39940 * 119.99759 * 26.48228 * 15 14 13 18 18 N 1.30821 * 120.00450 * 19.54190 * 17 15 14 19 19 Si 1.86800 * 119.99649 * 199.54446 * 17 15 14 20 20 H 1.48506 * 109.47393 * 94.96579 * 19 17 15 21 21 H 1.48502 * 109.47240 * 214.96742 * 19 17 15 22 22 H 1.48498 * 109.47296 * 334.96707 * 19 17 15 23 23 C 1.37595 * 119.88027 * 89.99955 * 10 7 6 24 24 H 1.08990 * 109.47516 * 264.77037 * 1 2 3 25 25 H 1.09002 * 109.47254 * 24.77447 * 1 2 3 26 26 H 1.09011 * 109.46887 * 144.77002 * 1 2 3 27 27 H 1.09001 * 109.47337 * 269.99628 * 3 2 1 28 28 H 1.08993 * 109.46971 * 29.99785 * 3 2 1 29 29 H 1.09000 * 109.46899 * 149.99926 * 3 2 1 30 30 H 1.08007 * 120.00016 * 174.30471 * 4 2 1 31 31 H 1.09002 * 109.47007 * 116.14504 * 5 4 2 32 32 H 1.08996 * 109.46551 * 356.14542 * 5 4 2 33 33 H 0.97003 * 120.00379 * 344.99671 * 6 5 4 34 34 H 1.08002 * 119.75479 * 0.04370 * 11 10 7 35 35 H 1.07999 * 119.86800 * 179.72378 * 12 11 10 36 36 H 1.07992 * 120.12834 * 180.25129 * 13 12 11 37 37 H 0.97000 * 120.00110 * 180.02562 * 18 17 15 38 38 H 1.07997 * 120.12214 * 0.02562 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4141 -2.4364 0.1306 6 7 1.9350 -3.1864 1.2761 7 16 1.0776 -4.4641 1.8884 8 8 -0.2589 -4.0094 2.0509 9 8 1.8533 -4.9938 2.9546 10 6 1.0319 -5.7074 0.6407 11 6 0.0007 -5.7180 -0.2863 12 6 -0.0513 -6.6938 -1.2694 13 6 0.9287 -7.6575 -1.3425 14 6 1.9828 -7.6530 -0.4106 15 6 2.9949 -8.6384 -0.4755 16 1 3.5354 -8.9170 0.4170 17 6 3.2962 -9.2525 -1.6964 18 7 2.9446 -8.6822 -2.8200 19 14 4.2005 -10.8869 -1.7215 20 1 3.2167 -11.9957 -1.8105 21 1 5.1064 -10.9333 -2.8973 22 1 4.9974 -11.0309 -0.4768 23 6 2.0224 -6.6610 0.5867 24 1 -0.3634 -0.0937 1.0233 25 1 -0.3634 0.9331 -0.4306 26 1 -0.3633 -0.8395 -0.5929 27 1 2.4422 1.6198 -1.0277 28 1 1.6714 2.0647 0.5138 29 1 3.2129 1.1747 0.5138 30 1 3.2380 -1.1369 -0.0923 31 1 1.5457 -3.0234 -0.7784 32 1 0.3540 -2.2328 0.2813 33 1 2.7822 -2.9348 1.6759 34 1 -0.7700 -4.9628 -0.2394 35 1 -0.8615 -6.6952 -1.9836 36 1 0.8884 -8.4144 -2.1117 37 1 3.1531 -9.1081 -3.6661 38 1 2.8265 -6.6486 1.3075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619499447.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:19 Heat of formation + Delta-G solvation = -74.347039 kcal Electronic energy + Delta-G solvation = -21196.007191 eV Core-core repulsion = 17936.091026 eV Total energy + Delta-G solvation = -3259.916165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.45602 -38.46808 -38.08165 -36.91626 -35.66531 -35.14789 -31.92217 -31.61444 -29.42091 -28.52348 -27.34499 -24.70043 -23.68533 -22.80463 -20.69867 -19.74257 -19.12591 -18.09667 -17.74508 -17.30136 -16.80907 -16.61427 -16.14268 -15.80893 -15.23835 -15.08461 -14.99189 -14.53118 -14.32043 -13.87675 -13.71298 -13.35957 -13.29596 -13.19708 -13.14110 -13.08201 -13.05331 -12.82988 -12.73321 -12.61404 -12.34236 -12.22007 -11.71832 -11.55355 -11.37208 -11.14098 -10.51781 -9.87113 -9.64537 -9.55713 -8.75440 -6.45714 -0.51087 0.38796 0.83647 1.16975 1.37105 1.45362 1.50434 2.17549 2.22416 2.54602 2.78663 3.46446 3.51167 3.81060 4.08418 4.29256 4.32427 4.40247 4.44485 4.52212 4.74389 4.78326 4.82294 4.86490 4.88058 4.98454 5.03424 5.08644 5.18581 5.19586 5.24108 5.40244 5.55417 5.74856 5.86369 5.92419 5.95686 6.09104 6.14057 6.51241 6.78668 6.83800 8.24283 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.003978 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.137999 B = 7036.833635 C = 7402.006341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C -0.118 4.118 4 C -0.192 4.192 5 C 0.138 3.862 6 N -1.102 6.102 7 S 2.721 3.279 8 O -0.985 6.985 9 O -0.996 6.996 10 C -0.638 4.638 11 C -0.147 4.147 12 C -0.121 4.121 13 C -0.140 4.140 14 C 0.065 3.935 15 C -0.503 4.503 16 H 0.078 0.922 17 C 0.041 3.959 18 N -0.821 5.821 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.145 4.145 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.425 0.575 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.292 0.708 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 14.076 0.481 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.175 4.175 4 C -0.211 4.211 5 C 0.013 3.987 6 N -0.864 5.864 7 S 2.813 3.187 8 O -0.974 6.974 9 O -0.986 6.986 10 C -0.727 4.727 11 C -0.168 4.168 12 C -0.140 4.140 13 C -0.159 4.159 14 C 0.062 3.938 15 C -0.532 4.532 16 H 0.096 0.904 17 C -0.175 4.175 18 N -0.446 5.446 19 Si 0.802 3.198 20 H -0.186 1.186 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.166 4.166 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.262 0.738 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.669 13.974 0.977 14.108 hybrid contribution 1.015 -1.247 -0.754 1.776 sum -0.654 12.727 0.223 12.746 Atomic orbital electron populations 1.21065 0.91995 1.03442 1.02714 1.22010 0.96467 0.95595 0.96852 1.20902 0.99802 0.93802 1.02956 1.22582 1.00363 0.92274 1.05921 1.20480 0.98570 0.91926 0.87697 1.55209 1.37851 1.47043 1.46295 1.00737 0.72655 0.72548 0.72756 1.93487 1.37210 1.81072 1.85676 1.93500 1.71725 1.79768 1.53636 1.30263 1.04829 1.18023 1.19577 1.20492 0.98406 1.01660 0.96249 1.21146 0.98696 0.95599 0.98561 1.21542 0.93922 0.99649 1.00825 1.18027 0.92643 0.91571 0.91581 1.19845 1.17962 1.19429 0.95985 0.90415 1.26700 0.95420 1.01376 0.94013 1.69819 1.37812 1.37481 0.99474 0.85197 0.78464 0.76932 0.79205 1.18628 1.18947 1.18385 1.20881 0.98295 0.95827 1.01646 0.91156 0.89932 0.91552 0.90456 0.90518 0.91362 0.85743 0.91520 0.89427 0.73843 0.84829 0.85341 0.87382 0.89705 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.93 71.23 0.64 -1.70 16 2 C -0.11 -1.95 6.05 -16.49 -0.10 -2.05 16 3 C -0.12 -1.56 10.00 71.24 0.71 -0.84 16 4 C -0.19 -4.03 9.24 25.65 0.24 -3.79 16 5 C 0.14 3.58 6.30 85.63 0.54 4.12 16 6 N -1.10 -31.53 5.99 -190.80 -1.14 -32.67 16 7 S 2.72 100.53 5.73 -56.49 -0.32 100.20 16 8 O -0.98 -38.46 16.74 -128.00 -2.14 -40.60 16 9 O -1.00 -41.89 17.27 -128.00 -2.21 -44.10 16 10 C -0.64 -27.82 5.94 22.22 0.13 -27.68 16 11 C -0.15 -6.20 9.53 22.46 0.21 -5.98 16 12 C -0.12 -5.33 10.02 22.22 0.22 -5.11 16 13 C -0.14 -7.08 8.69 22.73 0.20 -6.88 16 14 C 0.06 3.47 5.54 -21.29 -0.12 3.35 16 15 C -0.50 -26.85 9.03 23.46 0.21 -26.63 16 16 H 0.08 4.06 7.92 -2.91 -0.02 4.03 16 17 C 0.04 2.01 5.08 85.26 0.43 2.44 16 18 N -0.82 -41.20 11.20 21.82 0.24 -40.96 16 19 Si 0.98 37.28 29.60 68.60 2.03 39.31 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 23 C -0.15 -7.21 9.26 22.73 0.21 -7.00 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 26 H 0.07 1.21 6.64 -2.38 -0.02 1.19 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 28 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 29 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 30 H 0.12 2.35 8.05 -2.91 -0.02 2.33 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 2.22 5.30 -2.39 -0.01 2.21 16 33 H 0.43 10.23 8.64 -96.74 -0.84 9.39 16 34 H 0.13 4.83 7.61 -2.91 -0.02 4.80 16 35 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 36 H 0.11 5.61 6.38 -2.91 -0.02 5.59 16 37 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 38 H 0.11 5.30 7.60 -2.91 -0.02 5.27 16 Total: -1.00 -64.99 334.68 0.22 -64.76 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.24 Total: 31.81 kcal Atomic # 6 Polarization: -81.29 SS G_CDS: 3.53 Total: -77.76 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -0.90 Total: -73.63 kcal Atomic # 8 Polarization: -80.35 SS G_CDS: -4.35 Total: -84.70 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 16 Polarization: 100.53 SS G_CDS: -0.32 Total: 100.20 kcal Total: -64.99 0.22 -64.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499447.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.583 kcal (2) G-P(sol) polarization free energy of solvation -64.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds