Wall clock time and date at job start Tue Mar 31 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 H 1.09008 * 115.54743 * 29.32837 * 3 2 1 5 5 C 1.53071 * 117.51605 * 243.61168 * 3 2 1 6 6 C 1.52994 * 117.50227 * 174.99967 * 3 2 1 7 7 H 1.08999 * 117.49926 * 0.02562 * 6 3 2 8 8 N 1.46500 * 117.50045 * 215.00117 * 6 3 2 9 9 S 1.65605 * 120.00072 * 145.08686 * 8 6 3 10 10 O 1.42103 * 106.39718 * 311.46034 * 9 8 6 11 11 O 1.42102 * 106.40026 * 178.54183 * 9 8 6 12 12 C 1.76196 * 107.21844 * 64.99913 * 9 8 6 13 13 C 1.38652 * 119.87792 * 269.98082 * 12 9 8 14 14 C 1.38609 * 120.50387 * 179.97438 * 13 12 9 15 15 C 1.37648 * 120.24634 * 359.75920 * 14 13 12 16 16 C 1.40697 * 119.74066 * 0.53601 * 15 14 13 17 17 C 1.41399 * 120.24062 * 179.72135 * 16 15 14 18 18 H 1.07998 * 120.00154 * 155.44943 * 17 16 15 19 19 C 1.39946 * 119.99947 * 335.44535 * 17 16 15 20 20 N 1.30822 * 119.99751 * 342.30123 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 162.30304 * 19 17 16 22 22 H 1.48496 * 109.47266 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47012 * 300.00141 * 21 19 17 24 24 H 1.48504 * 109.47251 * 59.99432 * 21 19 17 25 25 C 1.37600 * 119.87338 * 89.99829 * 12 9 8 26 26 H 1.08997 * 109.46488 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46955 * 299.99836 * 1 2 3 28 28 H 1.08994 * 109.46983 * 60.00194 * 1 2 3 29 29 H 1.08999 * 109.47408 * 239.99965 * 2 1 3 30 30 H 1.09002 * 109.47217 * 119.99602 * 2 1 3 31 31 H 1.09004 * 117.52109 * 145.03902 * 5 3 2 32 32 H 1.09002 * 117.49045 * 0.02562 * 5 3 2 33 33 H 0.96997 * 119.99950 * 325.08784 * 8 6 3 34 34 H 1.08005 * 119.74978 * 359.97438 * 13 12 9 35 35 H 1.07994 * 119.87937 * 180.02562 * 14 13 12 36 36 H 1.07996 * 120.12725 * 180.28133 * 15 14 13 37 37 H 0.97005 * 119.99551 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.12808 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8447 1.9081 -1.2161 6 6 3.5502 1.6579 0.1183 7 1 4.1804 0.7720 0.1957 8 7 4.0097 2.8282 0.8703 9 16 5.3957 2.7410 1.7723 10 8 5.2955 1.5545 2.5479 11 8 5.5851 4.0287 2.3426 12 6 6.7324 2.4915 0.6518 13 6 7.1174 1.2036 0.3117 14 6 8.1668 0.9924 -0.5689 15 6 8.8356 2.0619 -1.1198 16 6 8.4577 3.3731 -0.7770 17 6 9.1414 4.4794 -1.3320 18 1 8.6479 5.4372 -1.4066 19 6 10.4575 4.3333 -1.7846 20 7 11.1731 3.3095 -1.3957 21 14 11.1926 5.6002 -2.9439 22 1 12.5900 5.2193 -3.2718 23 1 10.3885 5.6554 -4.1911 24 1 11.1839 6.9335 -2.2901 25 6 7.3905 3.5755 0.1178 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.7225 2.9434 -1.5346 32 1 3.0101 1.1866 -2.0162 33 1 3.5020 3.6542 0.8398 34 1 6.5956 0.3586 0.7361 35 1 8.4579 -0.0150 -0.8271 36 1 9.6500 1.8952 -1.8092 37 1 12.0855 3.2085 -1.7091 38 1 7.0889 4.5778 0.3840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619550597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:19 Heat of formation + Delta-G solvation = -48.552560 kcal Electronic energy + Delta-G solvation = -21276.342503 eV Core-core repulsion = 18017.544871 eV Total energy + Delta-G solvation = -3258.797633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.34083 -37.64049 -36.63686 -35.31124 -33.85656 -33.47321 -30.85052 -30.08775 -29.79829 -25.50138 -23.94412 -22.05907 -21.90743 -20.98826 -20.57625 -19.14207 -18.00203 -17.00503 -16.36392 -15.91407 -15.18324 -14.88248 -14.72071 -14.52656 -14.43646 -13.51819 -13.35941 -12.97002 -12.76590 -12.57076 -12.24426 -11.94770 -11.76665 -11.64107 -11.53630 -11.48395 -11.38624 -11.36503 -11.34169 -11.12561 -11.06047 -10.86250 -10.62693 -9.97540 -9.77913 -9.58745 -9.35261 -8.79026 -8.04311 -7.71111 -6.92929 -4.54307 0.98591 2.18994 2.63428 2.98960 3.01019 3.07298 3.48104 3.79184 3.82251 4.24443 4.43212 4.58581 4.78606 4.90190 5.03842 5.07880 5.19859 5.23978 5.39018 5.48076 5.63036 5.83454 5.86764 5.97075 6.02764 6.03734 6.15009 6.23819 6.34990 6.64643 6.75395 6.83244 7.02054 7.15205 7.21952 7.37332 7.71505 7.79509 7.93588 8.39110 8.66177 8.70946 10.02693 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.003995 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.437652 B = 7007.859388 C = 7307.466996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.162 4.162 4 H 0.106 0.894 5 C -0.184 4.184 6 C 0.099 3.901 7 H 0.137 0.863 8 N -1.092 6.092 9 S 2.690 3.310 10 O -0.972 6.972 11 O -0.971 6.971 12 C -0.629 4.629 13 C -0.149 4.149 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.092 3.908 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.913 3.087 22 H -0.277 1.277 23 H -0.263 1.263 24 H -0.264 1.264 25 C -0.125 4.125 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.413 0.587 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.284 0.716 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 -3.872 -1.797 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.182 4.182 4 H 0.124 0.876 5 C -0.224 4.224 6 C -0.010 4.010 7 H 0.154 0.846 8 N -0.845 5.845 9 S 2.786 3.214 10 O -0.962 6.962 11 O -0.961 6.961 12 C -0.721 4.721 13 C -0.171 4.171 14 C -0.139 4.139 15 C -0.138 4.138 16 C 0.089 3.911 17 C -0.491 4.491 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.418 5.418 21 Si 0.737 3.263 22 H -0.202 1.202 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.095 0.905 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.993 -4.050 -0.835 13.635 hybrid contribution 0.674 0.863 -1.248 1.661 sum -12.319 -3.186 -2.083 12.894 Atomic orbital electron populations 1.21736 0.95584 1.01438 1.01777 1.21142 0.95859 0.93983 1.02422 1.22926 0.94254 0.98446 1.02615 0.87587 1.23583 1.03815 1.02935 0.92026 1.21369 0.94348 0.89738 0.95540 0.84596 1.55230 1.43038 1.19640 1.66591 1.01676 0.72854 0.73097 0.73769 1.93520 1.86353 1.49185 1.67148 1.93545 1.85524 1.41088 1.75987 1.29701 1.20223 1.00648 1.21547 1.20073 1.00983 0.93321 1.02674 1.20804 0.96717 0.97768 0.98653 1.21643 0.99957 0.92060 1.00133 1.17671 0.90726 0.93294 0.89435 1.19584 0.97201 0.97224 1.35044 0.89979 1.25941 0.97047 0.96420 0.94928 1.69776 1.09367 1.28062 1.34644 0.86283 0.78069 0.81050 0.80909 1.20230 1.18703 1.18811 1.20747 1.00028 0.95451 0.98375 0.92805 0.92772 0.92717 0.91559 0.91207 0.88392 0.87993 0.75343 0.87657 0.88376 0.85753 0.90477 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.87 37.16 0.37 -0.79 16 2 C -0.10 -0.89 6.22 -26.73 -0.17 -1.06 16 3 C -0.16 -1.69 5.66 -90.59 -0.51 -2.20 16 4 H 0.11 1.04 8.08 -51.92 -0.42 0.62 16 5 C -0.18 -2.00 10.11 -26.70 -0.27 -2.27 16 6 C 0.10 1.28 6.18 -67.93 -0.42 0.86 16 7 H 0.14 1.81 8.11 -51.93 -0.42 1.39 16 8 N -1.09 -15.63 6.04 -4.89 -0.03 -15.66 16 9 S 2.69 50.40 5.71 -107.50 -0.61 49.79 16 10 O -0.97 -19.88 17.03 -57.17 -0.97 -20.85 16 11 O -0.97 -20.55 17.27 -57.17 -0.99 -21.54 16 12 C -0.63 -13.66 5.94 -39.66 -0.24 -13.89 16 13 C -0.15 -3.19 9.53 -39.29 -0.37 -3.57 16 14 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 15 C -0.12 -2.92 8.70 -38.87 -0.34 -3.26 16 16 C 0.09 2.38 5.57 -106.82 -0.60 1.78 16 17 C -0.46 -11.82 9.05 -37.74 -0.34 -12.16 16 18 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -19.78 10.95 55.55 0.61 -19.17 16 21 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 22 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 C -0.12 -2.99 9.26 -38.87 -0.36 -3.35 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.01 8.03 -51.93 -0.42 0.60 16 33 H 0.41 4.93 8.96 -34.47 -0.31 4.62 16 34 H 0.11 2.01 7.60 -52.48 -0.40 1.61 16 35 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 37 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 38 H 0.11 2.56 7.60 -52.48 -0.40 2.16 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -30.27 336.56 -10.87 -41.14 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.18 Total: 9.50 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: -3.73 Total: -41.25 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.58 Total: -34.83 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.96 Total: -42.39 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 50.40 SS G_CDS: -0.61 Total: 49.79 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.27 -10.87 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619550597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.415 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds