Wall clock time and date at job start Tue Mar 31 2020 06:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 H 1.09008 * 115.54743 * 29.32837 * 3 2 1 5 5 C 1.53071 * 117.51605 * 243.61168 * 3 2 1 6 6 C 1.52994 * 117.50227 * 174.99967 * 3 2 1 7 7 H 1.08999 * 117.49926 * 0.02562 * 6 3 2 8 8 N 1.46500 * 117.50045 * 215.00117 * 6 3 2 9 9 S 1.65605 * 120.00072 * 145.08686 * 8 6 3 10 10 O 1.42103 * 106.39718 * 311.46034 * 9 8 6 11 11 O 1.42102 * 106.40026 * 178.54183 * 9 8 6 12 12 C 1.76196 * 107.21844 * 64.99913 * 9 8 6 13 13 C 1.38652 * 119.87792 * 269.98082 * 12 9 8 14 14 C 1.38609 * 120.50387 * 179.97438 * 13 12 9 15 15 C 1.37648 * 120.24634 * 359.75920 * 14 13 12 16 16 C 1.40697 * 119.74066 * 0.53601 * 15 14 13 17 17 C 1.41399 * 120.24062 * 179.72135 * 16 15 14 18 18 H 1.07998 * 120.00154 * 155.44943 * 17 16 15 19 19 C 1.39946 * 119.99947 * 335.44535 * 17 16 15 20 20 N 1.30822 * 119.99751 * 342.30123 * 19 17 16 21 21 Si 1.86800 * 120.00069 * 162.30304 * 19 17 16 22 22 H 1.48496 * 109.47266 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47012 * 300.00141 * 21 19 17 24 24 H 1.48504 * 109.47251 * 59.99432 * 21 19 17 25 25 C 1.37600 * 119.87338 * 89.99829 * 12 9 8 26 26 H 1.08997 * 109.46488 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46955 * 299.99836 * 1 2 3 28 28 H 1.08994 * 109.46983 * 60.00194 * 1 2 3 29 29 H 1.08999 * 109.47408 * 239.99965 * 2 1 3 30 30 H 1.09002 * 109.47217 * 119.99602 * 2 1 3 31 31 H 1.09004 * 117.52109 * 145.03902 * 5 3 2 32 32 H 1.09002 * 117.49045 * 0.02562 * 5 3 2 33 33 H 0.96997 * 119.99950 * 325.08784 * 8 6 3 34 34 H 1.08005 * 119.74978 * 359.97438 * 13 12 9 35 35 H 1.07994 * 119.87937 * 180.02562 * 14 13 12 36 36 H 1.07996 * 120.12725 * 180.28133 * 15 14 13 37 37 H 0.97005 * 119.99551 * 180.02562 * 20 19 17 38 38 H 1.08004 * 120.12808 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8447 1.9081 -1.2161 6 6 3.5502 1.6579 0.1183 7 1 4.1804 0.7720 0.1957 8 7 4.0097 2.8282 0.8703 9 16 5.3957 2.7410 1.7723 10 8 5.2955 1.5545 2.5479 11 8 5.5851 4.0287 2.3426 12 6 6.7324 2.4915 0.6518 13 6 7.1174 1.2036 0.3117 14 6 8.1668 0.9924 -0.5689 15 6 8.8356 2.0619 -1.1198 16 6 8.4577 3.3731 -0.7770 17 6 9.1414 4.4794 -1.3320 18 1 8.6479 5.4372 -1.4066 19 6 10.4575 4.3333 -1.7846 20 7 11.1731 3.3095 -1.3957 21 14 11.1926 5.6002 -2.9439 22 1 12.5900 5.2193 -3.2718 23 1 10.3885 5.6554 -4.1911 24 1 11.1839 6.9335 -2.2901 25 6 7.3905 3.5755 0.1178 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.7225 2.9434 -1.5346 32 1 3.0101 1.1866 -2.0162 33 1 3.5020 3.6542 0.8398 34 1 6.5956 0.3586 0.7361 35 1 8.4579 -0.0150 -0.8271 36 1 9.6500 1.8952 -1.8092 37 1 12.0855 3.2085 -1.7091 38 1 7.0889 4.5778 0.3840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619550597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:18 Heat of formation + Delta-G solvation = -67.382903 kcal Electronic energy + Delta-G solvation = -21277.159048 eV Core-core repulsion = 18017.544871 eV Total energy + Delta-G solvation = -3259.614178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.46254 -39.25780 -38.24157 -36.93286 -35.67371 -34.43696 -31.92056 -31.75137 -31.58744 -27.35476 -24.65302 -23.68109 -23.13074 -22.71998 -21.43892 -20.60942 -19.66482 -18.48572 -17.74073 -17.51183 -16.83444 -16.56232 -16.17282 -15.48108 -15.31926 -15.21149 -15.05175 -14.31993 -13.92705 -13.72884 -13.59572 -13.31734 -13.21540 -13.16775 -13.07997 -13.05810 -12.86968 -12.81415 -12.56797 -12.50183 -12.21541 -12.06675 -11.85052 -11.56598 -11.31520 -11.13864 -10.83443 -9.90984 -9.80465 -9.56179 -8.73421 -6.45817 -0.53041 0.40526 0.84681 1.37051 1.46567 1.50189 2.07296 2.17755 2.53969 2.74718 2.95057 3.43413 3.51598 3.82891 3.90036 4.05148 4.12088 4.31432 4.36612 4.44148 4.56623 4.70127 4.84203 4.90126 4.90343 5.03597 5.05875 5.19573 5.22650 5.27905 5.29313 5.37973 5.41291 5.55980 5.56355 5.88386 5.93319 6.06848 6.10799 6.52130 6.79395 6.84322 8.24613 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021879 B = 0.003995 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.437652 B = 7007.859388 C = 7307.466996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.143 4.143 4 H 0.115 0.885 5 C -0.176 4.176 6 C 0.062 3.938 7 H 0.132 0.868 8 N -1.076 6.076 9 S 2.722 3.278 10 O -0.985 6.985 11 O -0.996 6.996 12 C -0.636 4.636 13 C -0.147 4.147 14 C -0.122 4.122 15 C -0.141 4.141 16 C 0.063 3.937 17 C -0.500 4.500 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.824 5.824 21 Si 0.985 3.015 22 H -0.266 1.266 23 H -0.257 1.257 24 H -0.261 1.261 25 C -0.147 4.147 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.426 0.574 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.292 0.708 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.850 -4.365 -2.416 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 C -0.164 4.164 4 H 0.133 0.867 5 C -0.216 4.216 6 C -0.046 4.046 7 H 0.149 0.851 8 N -0.834 5.834 9 S 2.815 3.185 10 O -0.975 6.975 11 O -0.987 6.987 12 C -0.725 4.725 13 C -0.168 4.168 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.060 3.940 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.179 4.179 20 N -0.450 5.450 21 Si 0.806 3.194 22 H -0.191 1.191 23 H -0.181 1.181 24 H -0.186 1.186 25 C -0.168 4.168 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.262 0.738 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.443 -4.554 -1.465 15.215 hybrid contribution 0.985 0.910 -0.995 1.670 sum -13.459 -3.644 -2.460 14.158 Atomic orbital electron populations 1.21720 0.94401 1.02145 1.02058 1.21206 0.96885 0.93074 1.02573 1.23017 0.92337 0.99488 1.01531 0.86654 1.23679 1.02552 1.03651 0.91681 1.21655 0.96272 0.89108 0.97516 0.85076 1.54770 1.41171 1.21014 1.66473 1.00699 0.72651 0.72035 0.73101 1.93499 1.86637 1.49787 1.67548 1.93506 1.86177 1.42252 1.76732 1.30207 1.21066 1.00214 1.20982 1.20470 1.00405 0.94106 1.01784 1.21147 0.96297 0.98554 0.98064 1.21656 1.00620 0.92615 1.01147 1.18031 0.91686 0.94035 0.90256 1.19860 0.98462 0.97419 1.37157 0.90169 1.26784 0.96849 0.98495 0.95813 1.69819 1.09976 1.29703 1.35511 0.85198 0.77550 0.78169 0.78523 1.19058 1.18128 1.18554 1.20826 1.00567 0.96232 0.99141 0.91962 0.92696 0.92238 0.90890 0.91676 0.87856 0.86979 0.73756 0.84958 0.85442 0.86891 0.89725 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.87 71.98 0.71 -1.19 16 2 C -0.10 -1.59 6.22 30.60 0.19 -1.40 16 3 C -0.14 -2.62 5.66 -10.77 -0.06 -2.68 16 4 H 0.12 1.92 8.08 -2.38 -0.02 1.90 16 5 C -0.18 -3.40 10.11 30.62 0.31 -3.10 16 6 C 0.06 1.49 6.18 44.99 0.28 1.77 16 7 H 0.13 3.26 8.11 -2.39 -0.02 3.24 16 8 N -1.08 -29.23 6.04 -169.40 -1.02 -30.25 16 9 S 2.72 99.86 5.71 -56.49 -0.32 99.54 16 10 O -0.98 -38.92 17.03 -128.00 -2.18 -41.10 16 11 O -1.00 -41.93 17.27 -128.00 -2.21 -44.14 16 12 C -0.64 -27.53 5.94 22.22 0.13 -27.40 16 13 C -0.15 -6.15 9.53 22.46 0.21 -5.93 16 14 C -0.12 -5.34 10.02 22.22 0.22 -5.12 16 15 C -0.14 -7.12 8.70 22.73 0.20 -6.92 16 16 C 0.06 3.36 5.57 -21.29 -0.12 3.24 16 17 C -0.50 -26.52 9.05 23.46 0.21 -26.31 16 18 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 19 C 0.04 1.77 5.14 85.26 0.44 2.21 16 20 N -0.82 -41.98 10.95 21.83 0.24 -41.74 16 21 Si 0.99 37.13 29.59 68.60 2.03 39.16 16 22 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 25 C -0.15 -7.22 9.26 22.73 0.21 -7.01 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 1.07 7.88 -2.39 -0.02 1.05 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.11 1.94 8.03 -2.39 -0.02 1.92 16 33 H 0.43 9.45 8.96 -96.75 -0.87 8.58 16 34 H 0.13 4.77 7.60 -2.91 -0.02 4.74 16 35 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.11 5.87 6.16 -2.91 -0.02 5.86 16 37 H 0.29 13.38 8.30 -92.70 -0.77 12.61 16 38 H 0.11 5.23 7.60 -2.91 -0.02 5.21 16 Total: -1.00 -65.47 336.56 -0.33 -65.79 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.20 Total: 32.58 kcal Atomic # 6 Polarization: -82.77 SS G_CDS: 2.94 Total: -79.83 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -0.78 Total: -71.99 kcal Atomic # 8 Polarization: -80.85 SS G_CDS: -4.39 Total: -85.24 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 99.86 SS G_CDS: -0.32 Total: 99.54 kcal Total: -65.47 -0.33 -65.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619550597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.590 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds