Wall clock time and date at job start Tue Mar 31 2020 07:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47163 * 2 1 4 4 S 1.81399 * 109.47007 * 119.99759 * 2 1 3 5 5 C 1.81402 * 102.99923 * 175.00181 * 4 2 1 6 6 C 1.50703 * 109.46799 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00463 * 359.97438 * 6 5 4 8 8 N 1.34786 * 119.99640 * 180.02562 * 6 5 4 9 9 C 1.39921 * 119.99604 * 174.77915 * 8 6 5 10 10 C 1.38964 * 120.04023 * 326.32607 * 9 8 6 11 11 C 1.38159 * 120.06557 * 180.02562 * 10 9 8 12 12 C 1.38166 * 120.13636 * 359.69525 * 11 10 9 13 13 C 1.38904 * 120.07777 * 0.55855 * 12 11 10 14 14 O 1.35746 * 120.04003 * 179.74157 * 13 12 11 15 15 C 1.34834 * 117.00326 * 173.82630 * 14 13 12 16 16 H 1.07998 * 119.99812 * 354.58573 * 15 14 13 17 17 C 1.38651 * 120.00179 * 174.59583 * 15 14 13 18 18 N 1.31558 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00182 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46673 * 90.00119 * 19 17 15 21 21 H 1.48496 * 109.47271 * 210.00105 * 19 17 15 22 22 H 1.48497 * 109.46979 * 330.00335 * 19 17 15 23 23 C 1.38716 * 120.03185 * 146.34622 * 9 8 6 24 24 H 1.09007 * 109.47046 * 300.00360 * 1 2 3 25 25 H 1.09006 * 109.46947 * 60.00044 * 1 2 3 26 26 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47473 * 239.99801 * 2 1 3 28 28 H 1.09006 * 109.47153 * 299.99830 * 3 2 1 29 29 H 1.08996 * 109.47088 * 59.99565 * 3 2 1 30 30 H 1.09001 * 109.47132 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47152 * 60.00028 * 5 4 2 32 32 H 1.09001 * 109.47277 * 299.99895 * 5 4 2 33 33 H 0.96996 * 119.99935 * 354.77803 * 8 6 5 34 34 H 1.07991 * 119.96495 * 0.02562 * 10 9 8 35 35 H 1.07995 * 119.92973 * 179.97438 * 11 10 9 36 36 H 1.08005 * 119.96067 * 180.29648 * 12 11 10 37 37 H 0.97002 * 120.00164 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.06855 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 3.9307 -0.8873 1.2291 6 6 4.5893 -1.5784 2.3952 7 8 3.9136 -2.0065 3.3069 8 7 5.9294 -1.7197 2.4255 9 6 6.5501 -2.2623 3.5561 10 6 6.0244 -2.0239 4.8201 11 6 6.6373 -2.5589 5.9368 12 6 7.7705 -3.3374 5.8002 13 6 8.3040 -3.5751 4.5399 14 8 9.4204 -4.3358 4.4069 15 6 9.8123 -4.6336 3.1517 16 1 9.1982 -4.3451 2.3114 17 6 11.0037 -5.3105 2.9396 18 7 11.7519 -5.6617 3.9631 19 14 11.5464 -5.7238 1.2006 20 1 12.3702 -4.6119 0.6618 21 1 12.3498 -6.9725 1.2163 22 1 10.3506 -5.9153 0.3412 23 6 7.6913 -3.0384 3.4162 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 4.3053 0.1334 1.1524 32 1 4.1591 -1.4281 0.3106 33 1 6.4633 -1.4454 1.6637 34 1 5.1360 -1.4198 4.9297 35 1 6.2271 -2.3718 6.9182 36 1 8.2445 -3.7582 6.6747 37 1 12.5852 -6.1355 3.8148 38 1 8.1022 -3.2245 2.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701229618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:45 Heat of formation + Delta-G solvation = -40.571116 kcal Electronic energy + Delta-G solvation = -20383.040875 eV Core-core repulsion = 17124.589343 eV Total energy + Delta-G solvation = -3258.451531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.19888 -38.65054 -36.46233 -35.11761 -34.28900 -32.27641 -30.83872 -29.15998 -28.24933 -27.46078 -25.32104 -22.60506 -22.01064 -21.82585 -20.11763 -18.03998 -17.89651 -16.94707 -16.56008 -15.88106 -15.63495 -15.16379 -14.96937 -14.51556 -14.35270 -14.22948 -13.86241 -13.66374 -13.49450 -13.06315 -12.94045 -12.64778 -12.36051 -11.87507 -11.75455 -11.67106 -11.61288 -11.55271 -11.15119 -11.04419 -10.77634 -10.46106 -10.03130 -9.98093 -9.64250 -9.48937 -8.82962 -7.87882 -7.75909 -7.18788 -6.47185 -4.07038 1.20494 1.90547 2.26283 2.34285 2.74631 3.09747 3.10265 3.15337 3.19056 3.93658 4.38524 4.46035 4.52665 4.60752 4.72623 4.85915 4.91481 5.08474 5.18366 5.25327 5.28112 5.35520 5.44593 5.68250 5.73995 5.75734 5.96235 6.02874 6.19965 6.24644 6.59876 6.91122 6.94690 7.08862 7.28497 7.39191 7.60123 7.77043 7.96802 8.19396 8.98094 9.68381 10.70835 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.003093 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.180178 B = 9051.677189 C =10111.611099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 C -0.149 4.149 4 S -0.176 6.176 5 C -0.129 4.129 6 C 0.526 3.474 7 O -0.497 6.497 8 N -0.665 5.665 9 C 0.179 3.821 10 C -0.205 4.205 11 C -0.062 4.062 12 C -0.199 4.199 13 C 0.168 3.832 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.090 0.910 17 C 0.040 3.960 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.255 4.255 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.407 0.593 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.270 0.730 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.854 12.643 -9.795 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.212 4.212 3 C -0.208 4.208 4 S 0.051 5.949 5 C -0.280 4.280 6 C 0.311 3.689 7 O -0.371 6.371 8 N -0.311 5.311 9 C 0.087 3.913 10 C -0.226 4.226 11 C -0.081 4.081 12 C -0.219 4.219 13 C 0.114 3.886 14 O -0.079 6.079 15 C -0.469 4.469 16 H 0.107 0.893 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.276 4.276 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.242 0.758 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.080 0.920 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.582 11.713 -8.112 21.863 hybrid contribution 1.424 0.431 -2.525 2.930 sum -15.158 12.144 -10.636 22.144 Atomic orbital electron populations 1.21565 0.91582 1.03106 1.02731 1.23266 1.00157 0.98855 0.98955 1.22113 1.01057 0.94599 1.03004 1.87569 1.01066 1.76545 1.29768 1.23511 0.97748 1.05136 1.01605 1.19682 0.82186 0.79752 0.87294 1.90778 1.62603 1.46447 1.37248 1.43360 1.06551 1.62584 1.18579 1.17380 0.93291 0.95102 0.85572 1.20542 1.03415 1.07901 0.90694 1.20534 0.94186 0.95865 0.97544 1.20266 0.99495 1.06574 0.95515 1.19081 0.87549 0.89331 0.92682 1.84021 1.35210 1.58111 1.30543 1.21264 1.06014 1.37853 0.81729 0.89285 1.25278 0.95002 0.96498 0.99695 1.70035 1.12841 1.36546 1.30218 0.85728 0.79022 0.78373 0.80393 1.19908 1.20212 1.19270 1.20807 1.00640 1.06179 1.00018 0.91584 0.91149 0.91541 0.89544 0.91805 0.91194 0.92609 0.87048 0.87167 0.75780 0.86315 0.86519 0.86306 0.91989 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 9.20 37.16 0.34 -0.52 16 2 C -0.08 -0.63 3.38 -26.73 -0.09 -0.72 16 3 C -0.15 -0.94 9.10 37.16 0.34 -0.60 16 4 S -0.18 -2.00 20.29 -107.50 -2.18 -4.18 16 5 C -0.13 -1.30 6.12 36.01 0.22 -1.08 16 6 C 0.53 7.71 7.59 -10.98 -0.08 7.63 16 7 O -0.50 -9.32 13.57 5.55 0.08 -9.25 16 8 N -0.67 -9.79 5.34 -9.88 -0.05 -9.84 16 9 C 0.18 3.42 6.27 -83.72 -0.52 2.89 16 10 C -0.20 -3.95 8.66 -39.34 -0.34 -4.29 16 11 C -0.06 -1.19 10.03 -39.64 -0.40 -1.58 16 12 C -0.20 -4.27 9.99 -39.36 -0.39 -4.67 16 13 C 0.17 4.06 6.64 -39.14 -0.26 3.80 16 14 O -0.18 -4.97 9.76 0.05 0.00 -4.97 16 15 C -0.39 -10.81 9.44 30.88 0.29 -10.51 16 16 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.05 13.67 55.48 0.76 -24.29 16 19 Si 0.94 20.15 29.55 -169.99 -5.02 15.13 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.25 -5.48 9.04 -39.21 -0.35 -5.83 16 24 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.34 6.92 -51.93 -0.36 -0.02 16 31 H 0.11 0.86 7.14 -51.92 -0.37 0.48 16 32 H 0.11 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.41 4.53 8.82 -40.82 -0.36 4.17 16 34 H 0.12 2.25 6.43 -52.49 -0.34 1.91 16 35 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.13 2.71 5.72 -52.49 -0.30 2.41 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -33.25 336.20 -7.65 -40.90 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.95 Total: 5.94 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.35 Total: -14.51 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.71 Total: -34.13 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -2.18 Total: -4.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.25 -7.65 -40.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701229618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.328 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds