Wall clock time and date at job start Tue Mar 31 2020 07:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47163 * 2 1 4 4 S 1.81399 * 109.47007 * 119.99759 * 2 1 3 5 5 C 1.81402 * 102.99923 * 175.00181 * 4 2 1 6 6 C 1.50703 * 109.46799 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00463 * 359.97438 * 6 5 4 8 8 N 1.34786 * 119.99640 * 180.02562 * 6 5 4 9 9 C 1.39921 * 119.99604 * 174.77915 * 8 6 5 10 10 C 1.38964 * 120.04023 * 326.32607 * 9 8 6 11 11 C 1.38159 * 120.06557 * 180.02562 * 10 9 8 12 12 C 1.38166 * 120.13636 * 359.69525 * 11 10 9 13 13 C 1.38904 * 120.07777 * 0.55855 * 12 11 10 14 14 O 1.35746 * 120.04003 * 179.74157 * 13 12 11 15 15 C 1.34834 * 117.00326 * 173.82630 * 14 13 12 16 16 H 1.07998 * 119.99812 * 354.58573 * 15 14 13 17 17 C 1.38651 * 120.00179 * 174.59583 * 15 14 13 18 18 N 1.31558 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00182 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46673 * 90.00119 * 19 17 15 21 21 H 1.48496 * 109.47271 * 210.00105 * 19 17 15 22 22 H 1.48497 * 109.46979 * 330.00335 * 19 17 15 23 23 C 1.38716 * 120.03185 * 146.34622 * 9 8 6 24 24 H 1.09007 * 109.47046 * 300.00360 * 1 2 3 25 25 H 1.09006 * 109.46947 * 60.00044 * 1 2 3 26 26 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47473 * 239.99801 * 2 1 3 28 28 H 1.09006 * 109.47153 * 299.99830 * 3 2 1 29 29 H 1.08996 * 109.47088 * 59.99565 * 3 2 1 30 30 H 1.09001 * 109.47132 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47152 * 60.00028 * 5 4 2 32 32 H 1.09001 * 109.47277 * 299.99895 * 5 4 2 33 33 H 0.96996 * 119.99935 * 354.77803 * 8 6 5 34 34 H 1.07991 * 119.96495 * 0.02562 * 10 9 8 35 35 H 1.07995 * 119.92973 * 179.97438 * 11 10 9 36 36 H 1.08005 * 119.96067 * 180.29648 * 12 11 10 37 37 H 0.97002 * 120.00164 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.06855 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 3.9307 -0.8873 1.2291 6 6 4.5893 -1.5784 2.3952 7 8 3.9136 -2.0065 3.3069 8 7 5.9294 -1.7197 2.4255 9 6 6.5501 -2.2623 3.5561 10 6 6.0244 -2.0239 4.8201 11 6 6.6373 -2.5589 5.9368 12 6 7.7705 -3.3374 5.8002 13 6 8.3040 -3.5751 4.5399 14 8 9.4204 -4.3358 4.4069 15 6 9.8123 -4.6336 3.1517 16 1 9.1982 -4.3451 2.3114 17 6 11.0037 -5.3105 2.9396 18 7 11.7519 -5.6617 3.9631 19 14 11.5464 -5.7238 1.2006 20 1 12.3702 -4.6119 0.6618 21 1 12.3498 -6.9725 1.2163 22 1 10.3506 -5.9153 0.3412 23 6 7.6913 -3.0384 3.4162 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 4.3053 0.1334 1.1524 32 1 4.1591 -1.4281 0.3106 33 1 6.4633 -1.4454 1.6637 34 1 5.1360 -1.4198 4.9297 35 1 6.2271 -2.3718 6.9182 36 1 8.2445 -3.7582 6.6747 37 1 12.5852 -6.1355 3.8148 38 1 8.1022 -3.2245 2.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701229618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:45 Heat of formation + Delta-G solvation = -61.746187 kcal Electronic energy + Delta-G solvation = -20383.959094 eV Core-core repulsion = 17124.589343 eV Total energy + Delta-G solvation = -3259.369751 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58875 -40.33471 -38.14905 -35.77955 -35.57757 -34.24629 -31.99099 -30.78472 -29.66051 -28.02248 -27.28159 -23.86527 -23.52677 -22.76262 -21.53293 -19.82450 -19.40522 -18.27244 -17.54909 -17.09971 -16.97181 -16.65253 -16.05036 -15.96199 -15.72052 -15.52346 -15.20273 -14.96146 -14.57322 -14.42558 -14.11152 -13.81321 -13.53801 -13.24392 -13.10924 -12.79193 -12.70667 -12.44580 -12.41375 -12.20148 -12.11355 -12.09965 -11.53968 -11.29755 -11.03576 -10.72637 -10.67776 -9.39170 -8.91518 -8.69626 -8.46677 -6.15701 0.32744 0.46073 0.67074 1.36246 1.43918 1.50889 1.53868 1.55998 2.01583 2.18133 2.82257 3.15617 3.47081 3.53399 3.87511 3.96038 4.01854 4.10884 4.19441 4.30797 4.36169 4.42340 4.61158 4.70275 4.74663 4.80422 4.87315 4.98070 5.00210 5.10122 5.26259 5.28742 5.34959 5.43102 5.63954 5.65315 6.00937 6.13318 6.35969 6.97426 7.01307 7.76769 8.76331 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.003093 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.180178 B = 9051.677189 C =10111.611099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.148 4.148 4 S -0.252 6.252 5 C -0.109 4.109 6 C 0.525 3.475 7 O -0.540 6.540 8 N -0.656 5.656 9 C 0.187 3.813 10 C -0.200 4.200 11 C -0.052 4.052 12 C -0.213 4.213 13 C 0.134 3.866 14 O -0.226 6.226 15 C -0.413 4.413 16 H 0.103 0.897 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.252 1.252 23 C -0.258 4.258 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.426 0.574 34 H 0.128 0.872 35 H 0.153 0.847 36 H 0.120 0.880 37 H 0.273 0.727 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.409 14.484 -12.538 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.193 4.193 3 C -0.207 4.207 4 S -0.026 6.026 5 C -0.259 4.259 6 C 0.312 3.688 7 O -0.416 6.416 8 N -0.303 5.303 9 C 0.092 3.908 10 C -0.221 4.221 11 C -0.070 4.070 12 C -0.233 4.233 13 C 0.083 3.917 14 O -0.132 6.132 15 C -0.489 4.489 16 H 0.120 0.880 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.838 3.162 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.176 1.176 23 C -0.279 4.279 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.265 0.735 34 H 0.146 0.854 35 H 0.171 0.829 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.182 13.607 -10.882 25.183 hybrid contribution 1.617 0.031 -1.596 2.272 sum -16.565 13.638 -12.478 24.822 Atomic orbital electron populations 1.21607 0.91139 1.02872 1.03450 1.23324 1.00302 0.99062 0.96599 1.22113 1.01463 0.93607 1.03477 1.87880 1.03138 1.77980 1.33612 1.23420 0.95871 1.06550 1.00082 1.20464 0.81567 0.78800 0.87963 1.90764 1.63446 1.48145 1.39273 1.43324 1.07041 1.61935 1.17995 1.17407 0.92293 0.93888 0.87172 1.20845 1.03194 1.07109 0.90939 1.20912 0.92723 0.94034 0.99361 1.20489 1.00501 1.07443 0.94866 1.19605 0.87350 0.90162 0.94627 1.83988 1.37393 1.60584 1.31213 1.21798 1.06701 1.38291 0.82142 0.87980 1.26602 0.94695 0.95997 1.04689 1.70187 1.13783 1.38633 1.33140 0.84580 0.78959 0.78311 0.74326 1.18520 1.19905 1.17606 1.20845 1.01338 1.06396 0.99337 0.92310 0.88849 0.92307 0.88219 0.89961 0.92036 0.91996 0.83980 0.84313 0.73526 0.85372 0.82915 0.86234 0.91813 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.20 71.98 0.66 -0.78 16 2 C -0.06 -0.78 3.38 30.59 0.10 -0.68 16 3 C -0.15 -1.36 9.10 71.98 0.66 -0.70 16 4 S -0.25 -5.29 20.29 -56.49 -1.15 -6.44 16 5 C -0.11 -1.83 6.12 71.24 0.44 -1.39 16 6 C 0.52 14.12 7.59 87.66 0.66 14.78 16 7 O -0.54 -19.51 13.57 -3.05 -0.04 -19.55 16 8 N -0.66 -17.67 5.34 -303.54 -1.62 -19.29 16 9 C 0.19 6.86 6.27 38.14 0.24 7.10 16 10 C -0.20 -7.39 8.66 22.43 0.19 -7.20 16 11 C -0.05 -1.90 10.03 22.23 0.22 -1.68 16 12 C -0.21 -9.30 9.99 22.41 0.22 -9.08 16 13 C 0.13 6.67 6.64 22.56 0.15 6.82 16 14 O -0.23 -13.40 9.76 -22.74 -0.22 -13.63 16 15 C -0.41 -23.50 9.44 67.92 0.64 -22.86 16 16 H 0.10 5.25 5.30 -2.91 -0.02 5.24 16 17 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 18 N -0.92 -55.73 13.67 21.61 0.30 -55.43 16 19 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 23 C -0.26 -11.06 9.04 22.51 0.20 -10.86 16 24 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.09 0.61 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.50 6.92 -2.39 -0.02 0.48 16 31 H 0.14 1.55 7.14 -2.39 -0.02 1.53 16 32 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.43 8.16 8.82 -92.71 -0.82 7.34 16 34 H 0.13 4.59 6.43 -2.92 -0.02 4.57 16 35 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.13 5.49 5.72 -2.91 -0.02 5.47 16 Total: -1.00 -76.57 336.20 4.42 -72.15 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.27 Total: 25.90 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 4.86 Total: -27.29 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.33 Total: -74.73 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.26 Total: -33.17 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.15 Total: -6.44 kcal Total: -76.57 4.42 -72.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701229618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.399 kcal (2) G-P(sol) polarization free energy of solvation -76.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds