Wall clock time and date at job start Tue Mar 31 2020 07:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47190 * 2 1 4 4 C 1.50692 * 109.47234 * 239.99324 * 2 1 3 5 5 O 1.20828 * 120.00463 * 240.00152 * 4 2 1 6 6 O 1.34236 * 120.00016 * 60.00325 * 4 2 1 7 7 C 1.45200 * 116.99924 * 179.97438 * 6 4 2 8 8 C 1.50705 * 109.46696 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00206 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99824 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00210 * 180.02562 * 10 8 7 12 12 H 1.07993 * 119.99795 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00151 * 180.02562 * 11 10 8 14 14 N 1.31416 * 120.00015 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99976 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47135 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47208 * 119.99686 * 15 13 11 18 18 H 1.48501 * 109.47088 * 239.99793 * 15 13 11 19 19 C 1.50706 * 109.46544 * 119.99685 * 2 1 3 20 20 C 1.38216 * 120.01546 * 60.00160 * 19 2 1 21 21 C 1.38217 * 120.02581 * 179.97438 * 20 19 2 22 22 C 1.38265 * 120.05343 * 0.02562 * 21 20 19 23 23 C 1.38181 * 120.02597 * 359.97438 * 22 21 20 24 24 C 1.38443 * 120.00897 * 239.97728 * 19 2 1 25 25 F 1.35099 * 120.02540 * 0.04305 * 24 19 2 26 26 H 1.09008 * 109.46802 * 60.00486 * 1 2 3 27 27 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47711 * 300.00364 * 1 2 3 29 29 H 1.08994 * 109.47870 * 300.00051 * 7 6 4 30 30 H 1.08998 * 109.46652 * 60.00598 * 7 6 4 31 31 H 0.97000 * 119.99987 * 0.02562 * 10 8 7 32 32 H 0.96998 * 119.99917 * 179.97438 * 14 13 11 33 33 H 1.08000 * 119.98383 * 0.02562 * 20 19 2 34 34 H 1.07997 * 119.97673 * 179.97438 * 21 20 19 35 35 H 1.07999 * 119.99414 * 179.72576 * 22 21 20 36 36 H 1.08002 * 120.01438 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7270 -1.6929 -1.1194 6 8 1.7081 -0.2520 -2.4496 7 6 2.2278 -0.9860 -3.5895 8 6 1.7628 -0.3296 -4.8639 9 8 1.0627 0.6597 -4.8161 10 7 2.1248 -0.8419 -6.0567 11 6 1.7022 -0.2445 -7.2161 12 1 1.0789 0.6363 -7.1735 13 6 2.0750 -0.7731 -8.4459 14 7 2.8331 -1.8453 -8.4977 15 14 1.4986 0.0405 -10.0255 16 1 0.6622 1.2227 -9.6968 17 1 2.6775 0.4727 -10.8185 18 1 0.6975 -0.9274 -10.8171 19 6 2.0322 -0.7104 1.2306 20 6 1.6985 -2.0336 1.4497 21 6 2.1594 -2.6855 2.5779 22 6 2.9543 -2.0148 3.4890 23 6 3.2893 -0.6919 3.2721 24 6 2.8285 -0.0379 2.1418 25 9 3.1550 1.2556 1.9289 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.3172 -0.9850 -3.5565 30 1 1.8642 -2.0130 -3.5566 31 1 2.6843 -1.6334 -6.0950 32 1 3.0930 -2.2144 -9.3562 33 1 1.0779 -2.5586 0.7385 34 1 1.8977 -3.7193 2.7485 35 1 3.3102 -2.5238 4.3725 36 1 3.9106 -0.1683 3.9837 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731396360.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:18 Heat of formation + Delta-G solvation = -146.337951 kcal Electronic energy + Delta-G solvation = -22736.798222 eV Core-core repulsion = 18907.547121 eV Total energy + Delta-G solvation = -3829.251102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.13028 -40.67277 -39.17471 -38.10286 -36.14983 -34.58413 -34.00362 -31.38592 -30.79790 -29.86057 -28.32901 -25.29404 -24.52626 -23.09396 -22.50274 -20.24482 -19.58516 -18.09777 -17.91923 -17.57141 -16.68497 -16.59319 -16.19555 -15.81815 -15.73352 -15.30824 -14.56208 -14.43270 -14.27574 -14.02059 -13.84035 -13.39859 -13.16158 -12.95893 -12.44908 -12.36598 -12.31805 -12.10702 -11.90213 -11.62825 -11.38847 -11.17347 -11.14981 -10.41682 -10.39343 -10.34575 -10.25619 -9.62091 -9.21616 -8.91795 -8.52532 -8.08760 -6.50480 -3.92478 0.85277 0.97743 2.28030 2.67543 3.11478 3.23591 3.30865 3.39360 3.73273 3.99472 4.11154 4.14646 4.43737 4.61934 4.72473 4.87347 4.93335 5.01964 5.08944 5.12509 5.14710 5.44988 5.58765 5.59189 5.65059 5.69094 5.78509 5.84938 6.00113 6.05656 6.09486 6.16144 6.58232 6.64959 7.47661 7.82622 7.95841 8.48056 9.06809 9.38959 9.88778 10.66860 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.036484 B = 0.002781 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.285066 B =10065.878437 C =10312.370792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 H 0.121 0.879 4 C 0.463 3.537 5 O -0.506 6.506 6 O -0.321 6.321 7 C 0.060 3.940 8 C 0.439 3.561 9 O -0.575 6.575 10 N -0.553 5.553 11 C -0.302 4.302 12 H 0.107 0.893 13 C 0.024 3.976 14 N -0.897 5.897 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.107 4.107 20 C -0.057 4.057 21 C -0.131 4.131 22 C -0.089 4.089 23 C -0.157 4.157 24 C 0.109 3.891 25 F -0.137 7.137 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.395 0.605 32 H 0.273 0.727 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -1.901 22.381 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 H 0.139 0.861 4 C 0.305 3.695 5 O -0.394 6.394 6 O -0.236 6.236 7 C -0.017 4.017 8 C 0.223 3.777 9 O -0.459 6.459 10 N -0.191 5.191 11 C -0.431 4.431 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.760 3.240 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.108 4.108 20 C -0.075 4.075 21 C -0.149 4.149 22 C -0.107 4.107 23 C -0.176 4.176 24 C 0.089 3.911 25 F -0.115 7.115 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.228 0.772 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.908 -1.577 22.218 22.292 hybrid contribution 0.472 -0.133 -0.961 1.079 sum -0.436 -1.710 21.256 21.329 Atomic orbital electron populations 1.21810 0.90398 1.03405 1.04211 1.19815 0.98983 1.00637 0.86856 0.86129 1.23427 0.77786 0.82997 0.85247 1.90665 1.35492 1.25856 1.87417 1.86543 1.68600 1.54585 1.13833 1.22767 0.99586 0.95618 0.83777 1.19312 0.86797 0.87640 0.83901 1.90561 1.41315 1.27443 1.86603 1.41715 1.45755 1.27646 1.03940 1.19777 1.29732 1.11423 0.82128 0.87554 1.25317 0.96576 0.96233 0.99674 1.69624 1.35634 1.21455 1.27077 0.85742 0.78487 0.79157 0.80628 1.19075 1.20613 1.20619 1.19394 1.00352 0.95492 0.95594 1.20883 0.97654 0.92481 0.96492 1.21192 0.98725 1.00465 0.94502 1.21031 0.96935 0.93453 0.99305 1.21090 1.03072 0.96045 0.97385 1.17499 0.98349 0.79101 0.96116 1.91496 1.90961 1.34268 1.94790 0.89781 0.91748 0.90871 0.89562 0.89541 0.77171 0.91679 0.85097 0.85178 0.85010 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.94 37.16 0.33 -1.14 16 2 C -0.04 -0.55 2.99 -92.92 -0.28 -0.83 16 3 H 0.12 1.46 7.13 -51.93 -0.37 1.08 16 4 C 0.46 7.42 7.12 36.00 0.26 7.67 16 5 O -0.51 -8.84 14.86 -18.75 -0.28 -9.11 16 6 O -0.32 -6.01 9.66 -45.92 -0.44 -6.45 16 7 C 0.06 1.15 5.94 36.01 0.21 1.37 16 8 C 0.44 10.61 7.86 -10.98 -0.09 10.53 16 9 O -0.58 -16.00 16.08 -14.11 -0.23 -16.23 16 10 N -0.55 -14.03 5.29 -10.97 -0.06 -14.09 16 11 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 12 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 13 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 14 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 15 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.11 -1.27 4.40 -104.55 -0.46 -1.73 16 20 C -0.06 -0.61 7.93 -39.60 -0.31 -0.92 16 21 C -0.13 -1.14 10.04 -39.58 -0.40 -1.54 16 22 C -0.09 -0.71 10.04 -39.59 -0.40 -1.11 16 23 C -0.16 -1.44 10.03 -39.51 -0.40 -1.84 16 24 C 0.11 1.24 7.25 -39.42 -0.29 0.95 16 25 F -0.14 -1.66 16.19 2.25 0.04 -1.62 16 26 H 0.08 0.96 8.11 -51.92 -0.42 0.54 16 27 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 30 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 31 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 33 H 0.13 1.35 7.52 -52.49 -0.39 0.95 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -32.56 325.83 -6.35 -38.91 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -3.94 Total: 7.88 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.05 Total: 3.50 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.67 Total: -37.47 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.95 Total: -31.79 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.56 -6.35 -38.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731396360.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.431 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds