Wall clock time and date at job start Tue Mar 31 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46610 * 2 1 4 4 C 1.50693 * 109.47334 * 119.99911 * 2 1 3 5 5 O 1.21280 * 120.00019 * 0.02562 * 4 2 1 6 6 N 1.34773 * 120.00117 * 180.02562 * 4 2 1 7 7 C 1.39272 * 120.00564 * 185.52124 * 6 4 2 8 8 C 1.38765 * 120.15218 * 24.85986 * 7 6 4 9 9 C 1.38106 * 120.14862 * 179.97438 * 8 7 6 10 10 C 1.38456 * 120.47035 * 359.97420 * 9 8 7 11 11 C 1.38114 * 120.30626 * 359.78991 * 10 9 8 12 12 F 1.35106 * 120.07758 * 180.23173 * 11 10 9 13 13 C 1.40034 * 119.84657 * 0.46489 * 11 10 9 14 14 C 1.47172 * 120.23424 * 179.78844 * 13 11 10 15 15 O 1.21564 * 120.00021 * 269.72534 * 14 13 11 16 16 O 1.34798 * 120.00104 * 89.72342 * 14 13 11 17 17 C 1.34865 * 117.00150 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00227 * 359.97438 * 17 16 14 19 19 C 1.38788 * 120.00297 * 180.02562 * 17 16 14 20 20 N 1.31432 * 119.99814 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00472 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47225 * 89.99567 * 21 19 17 23 23 H 1.48497 * 109.47689 * 209.99777 * 21 19 17 24 24 H 1.48499 * 109.47155 * 330.00122 * 21 19 17 25 25 H 1.09001 * 109.47225 * 299.99373 * 1 2 3 26 26 H 1.08994 * 109.47719 * 59.99922 * 1 2 3 27 27 H 1.08998 * 109.46596 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47225 * 240.00627 * 2 1 3 29 29 H 1.08998 * 109.47557 * 300.00198 * 3 2 1 30 30 H 1.09000 * 109.47335 * 60.00411 * 3 2 1 31 31 H 1.09003 * 109.46865 * 180.02562 * 3 2 1 32 32 H 0.97008 * 120.00321 * 5.51651 * 6 4 2 33 33 H 1.07996 * 119.92484 * 359.95911 * 8 7 6 34 34 H 1.08000 * 119.76854 * 180.02562 * 9 8 7 35 35 H 1.07994 * 119.84702 * 180.02562 * 10 9 8 36 36 H 0.96998 * 120.00503 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 1.2443 -1.1717 2.0285 6 7 3.3575 -0.8330 1.4439 7 6 3.8229 -1.5872 2.5182 8 6 3.0390 -2.6017 3.0493 9 6 3.5009 -3.3499 4.1143 10 6 4.7473 -3.0973 4.6617 11 6 5.5454 -2.0954 4.1450 12 9 6.7627 -1.8559 4.6798 13 6 5.0878 -1.3252 3.0688 14 6 5.9292 -0.2524 2.5145 15 8 5.8429 0.8770 2.9557 16 8 6.7957 -0.5223 1.5178 17 6 7.5370 0.5053 1.0559 18 1 7.4208 1.4902 1.4836 19 6 8.4485 0.2975 0.0301 20 7 8.5896 -0.9009 -0.4908 21 14 9.4748 1.7208 -0.6102 22 1 10.7402 1.8056 0.1624 23 1 9.7850 1.5012 -2.0457 24 1 8.7151 2.9875 -0.4561 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 3.9871 -0.3960 0.8493 33 1 2.0655 -2.8064 2.6290 34 1 2.8859 -4.1382 4.5225 35 1 5.0986 -3.6888 5.4941 36 1 9.2269 -1.0464 -1.2074 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734039242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:24 Heat of formation + Delta-G solvation = -137.851376 kcal Electronic energy + Delta-G solvation = -23878.982073 eV Core-core repulsion = 20050.098977 eV Total energy + Delta-G solvation = -3828.883096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.58978 -40.79229 -39.16318 -38.01010 -35.25156 -34.77740 -34.58631 -32.28693 -30.81608 -29.50585 -27.18987 -25.77966 -24.42563 -23.62148 -22.03285 -20.52138 -19.88117 -18.13559 -17.85636 -17.49153 -17.14222 -15.89614 -15.69467 -15.56632 -15.29186 -15.16847 -14.48707 -14.44544 -14.33304 -14.11575 -13.86892 -13.06368 -12.89799 -12.71180 -12.50773 -12.32625 -12.07640 -11.81346 -11.80193 -11.47135 -11.27353 -11.25987 -11.18585 -10.55451 -10.51071 -10.45574 -10.00824 -9.69332 -9.30050 -8.70146 -8.56046 -8.03259 -6.53528 -4.22114 1.13164 1.30852 2.55116 2.92602 3.00823 3.12006 3.17604 3.27946 3.67378 3.86485 4.32518 4.45041 4.50242 4.76562 4.83819 4.95159 4.97838 5.18304 5.28407 5.42041 5.45698 5.51349 5.67376 5.70317 5.82293 5.93878 6.08069 6.09808 6.12124 6.20597 6.42831 6.47833 6.59641 7.02682 7.26084 7.37056 7.79233 8.02846 8.49772 8.93803 9.66487 10.63177 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.006343 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.090550 B = 4413.005850 C = 6242.812163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 C -0.151 4.151 4 C 0.522 3.478 5 O -0.520 6.520 6 N -0.662 5.662 7 C 0.211 3.789 8 C -0.149 4.149 9 C -0.063 4.063 10 C -0.178 4.178 11 C 0.154 3.846 12 F -0.126 7.126 13 C -0.141 4.141 14 C 0.434 3.566 15 O -0.534 6.534 16 O -0.200 6.200 17 C -0.387 4.387 18 H 0.098 0.902 19 C 0.046 3.954 20 N -0.857 5.857 21 Si 0.944 3.056 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.265 1.265 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.421 0.579 33 H 0.155 0.845 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.267 -2.822 0.681 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 C -0.208 4.208 4 C 0.310 3.690 5 O -0.395 6.395 6 N -0.305 5.305 7 C 0.114 3.886 8 C -0.169 4.169 9 C -0.082 4.082 10 C -0.198 4.198 11 C 0.134 3.866 12 F -0.105 7.105 13 C -0.146 4.146 14 C 0.280 3.720 15 O -0.431 6.431 16 O -0.107 6.107 17 C -0.463 4.463 18 H 0.116 0.884 19 C -0.160 4.160 20 N -0.493 5.493 21 Si 0.769 3.231 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.190 1.190 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.259 0.741 33 H 0.172 0.828 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.706 -2.919 1.104 13.084 hybrid contribution 1.332 0.895 -0.453 1.667 sum -11.374 -2.024 0.651 11.571 Atomic orbital electron populations 1.21621 0.92100 1.02838 1.02313 1.21347 0.98490 0.97718 0.95943 1.21854 1.02133 0.93651 1.03174 1.20947 0.81116 0.79110 0.87785 1.90633 1.55159 1.47673 1.46085 1.43547 1.08616 1.49914 1.28410 1.17386 0.91678 0.90956 0.88564 1.21326 1.01796 0.94792 0.98959 1.20915 0.94346 0.98185 0.94753 1.20977 0.95637 0.99584 1.03566 1.17349 0.81243 0.95143 0.92908 1.91546 1.40859 1.93537 1.84514 1.19082 0.96076 1.00187 0.99244 1.20350 0.82451 0.87022 0.82225 1.90697 1.68644 1.22718 1.61023 1.84049 1.43503 1.40193 1.42934 1.21303 1.17925 0.89325 1.17757 0.88416 1.25382 0.96765 0.98215 0.95592 1.69993 1.33954 1.20933 1.24414 0.85659 0.79657 0.79815 0.78019 1.19695 1.20191 1.18957 0.91825 0.91794 0.91887 0.87760 0.90961 0.91810 0.91460 0.74108 0.82773 0.84478 0.84273 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.48 37.16 0.32 -0.98 16 2 C -0.11 -1.28 3.27 -91.77 -0.30 -1.58 16 3 C -0.15 -1.67 9.09 37.16 0.34 -1.33 16 4 C 0.52 7.80 6.95 -10.99 -0.08 7.72 16 5 O -0.52 -8.63 13.14 5.56 0.07 -8.56 16 6 N -0.66 -11.22 5.08 -9.68 -0.05 -11.27 16 7 C 0.21 3.90 6.44 -83.47 -0.54 3.37 16 8 C -0.15 -2.33 8.70 -39.44 -0.34 -2.68 16 9 C -0.06 -0.85 10.02 -39.55 -0.40 -1.24 16 10 C -0.18 -2.63 10.00 -39.55 -0.40 -3.03 16 11 C 0.15 2.98 7.29 -38.95 -0.28 2.69 16 12 F -0.13 -2.64 16.83 2.25 0.04 -2.60 16 13 C -0.14 -3.01 5.77 -104.78 -0.60 -3.62 16 14 C 0.43 11.10 5.89 34.36 0.20 11.30 16 15 O -0.53 -14.77 16.36 -19.32 -0.32 -15.09 16 16 O -0.20 -5.69 9.75 -21.85 -0.21 -5.90 16 17 C -0.39 -11.13 9.65 30.94 0.30 -10.83 16 18 H 0.10 2.82 6.86 -52.48 -0.36 2.46 16 19 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 20 N -0.86 -24.32 13.67 55.49 0.76 -23.57 16 21 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 32 H 0.42 7.31 7.17 -40.82 -0.29 7.02 16 33 H 0.15 2.32 5.77 -52.49 -0.30 2.02 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -33.64 323.19 -5.60 -39.24 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -3.85 Total: 6.39 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.88 Total: 0.95 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.71 Total: -34.84 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.46 Total: -29.54 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.64 -5.60 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734039242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.616 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds