Wall clock time and date at job start Tue Mar 31 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46610 * 2 1 4 4 C 1.50693 * 109.47334 * 119.99911 * 2 1 3 5 5 O 1.21280 * 120.00019 * 0.02562 * 4 2 1 6 6 N 1.34773 * 120.00117 * 180.02562 * 4 2 1 7 7 C 1.39272 * 120.00564 * 185.52124 * 6 4 2 8 8 C 1.38765 * 120.15218 * 24.85986 * 7 6 4 9 9 C 1.38106 * 120.14862 * 179.97438 * 8 7 6 10 10 C 1.38456 * 120.47035 * 359.97420 * 9 8 7 11 11 C 1.38114 * 120.30626 * 359.78991 * 10 9 8 12 12 F 1.35106 * 120.07758 * 180.23173 * 11 10 9 13 13 C 1.40034 * 119.84657 * 0.46489 * 11 10 9 14 14 C 1.47172 * 120.23424 * 179.78844 * 13 11 10 15 15 O 1.21564 * 120.00021 * 269.72534 * 14 13 11 16 16 O 1.34798 * 120.00104 * 89.72342 * 14 13 11 17 17 C 1.34865 * 117.00150 * 180.02562 * 16 14 13 18 18 H 1.08005 * 120.00227 * 359.97438 * 17 16 14 19 19 C 1.38788 * 120.00297 * 180.02562 * 17 16 14 20 20 N 1.31432 * 119.99814 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00472 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47225 * 89.99567 * 21 19 17 23 23 H 1.48497 * 109.47689 * 209.99777 * 21 19 17 24 24 H 1.48499 * 109.47155 * 330.00122 * 21 19 17 25 25 H 1.09001 * 109.47225 * 299.99373 * 1 2 3 26 26 H 1.08994 * 109.47719 * 59.99922 * 1 2 3 27 27 H 1.08998 * 109.46596 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47225 * 240.00627 * 2 1 3 29 29 H 1.08998 * 109.47557 * 300.00198 * 3 2 1 30 30 H 1.09000 * 109.47335 * 60.00411 * 3 2 1 31 31 H 1.09003 * 109.46865 * 180.02562 * 3 2 1 32 32 H 0.97008 * 120.00321 * 5.51651 * 6 4 2 33 33 H 1.07996 * 119.92484 * 359.95911 * 8 7 6 34 34 H 1.08000 * 119.76854 * 180.02562 * 9 8 7 35 35 H 1.07994 * 119.84702 * 180.02562 * 10 9 8 36 36 H 0.96998 * 120.00503 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 1.2443 -1.1717 2.0285 6 7 3.3575 -0.8330 1.4439 7 6 3.8229 -1.5872 2.5182 8 6 3.0390 -2.6017 3.0493 9 6 3.5009 -3.3499 4.1143 10 6 4.7473 -3.0973 4.6617 11 6 5.5454 -2.0954 4.1450 12 9 6.7627 -1.8559 4.6798 13 6 5.0878 -1.3252 3.0688 14 6 5.9292 -0.2524 2.5145 15 8 5.8429 0.8770 2.9557 16 8 6.7957 -0.5223 1.5178 17 6 7.5370 0.5053 1.0559 18 1 7.4208 1.4902 1.4836 19 6 8.4485 0.2975 0.0301 20 7 8.5896 -0.9009 -0.4908 21 14 9.4748 1.7208 -0.6102 22 1 10.7402 1.8056 0.1624 23 1 9.7850 1.5012 -2.0457 24 1 8.7151 2.9875 -0.4561 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 3.9871 -0.3960 0.8493 33 1 2.0655 -2.8064 2.6290 34 1 2.8859 -4.1382 4.5225 35 1 5.0986 -3.6888 5.4941 36 1 9.2269 -1.0464 -1.2074 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734039242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:24 Heat of formation + Delta-G solvation = -159.284473 kcal Electronic energy + Delta-G solvation = -23879.911482 eV Core-core repulsion = 20050.098977 eV Total energy + Delta-G solvation = -3829.812505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.13472 -42.12789 -41.01740 -39.43624 -37.34544 -36.06334 -35.56900 -34.40898 -32.28803 -30.77849 -28.06430 -27.80006 -25.68317 -25.15094 -23.27070 -22.24475 -21.07437 -20.03184 -19.55628 -18.88338 -18.71091 -17.44915 -17.25360 -16.88493 -16.80320 -16.56855 -16.27441 -16.12112 -15.89117 -15.53739 -14.94866 -14.64780 -14.29170 -13.96099 -13.74407 -13.66449 -13.40861 -13.23879 -13.03675 -12.86929 -12.83373 -12.48357 -12.23802 -12.15618 -12.11181 -12.07896 -11.72134 -11.33272 -10.89286 -10.78170 -10.00542 -9.35219 -8.62193 -6.43701 -0.23011 -0.02202 1.05748 1.32067 1.35416 1.47763 1.50181 1.75535 2.01870 2.41355 2.57070 2.88638 3.06020 3.36765 3.75559 3.87547 3.90433 3.93646 4.09867 4.22552 4.34429 4.46392 4.69247 4.75684 4.76503 4.86679 4.91968 4.98048 5.02415 5.08331 5.16937 5.20573 5.22490 5.34275 5.70101 5.75557 6.06892 6.40698 6.78264 6.80688 7.56424 8.57271 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.006343 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.090550 B = 4413.005850 C = 6242.812163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.518 3.482 5 O -0.536 6.536 6 N -0.670 5.670 7 C 0.199 3.801 8 C -0.148 4.148 9 C -0.036 4.036 10 C -0.159 4.159 11 C 0.126 3.874 12 F -0.145 7.145 13 C -0.187 4.187 14 C 0.443 3.557 15 O -0.566 6.566 16 O -0.226 6.226 17 C -0.426 4.426 18 H 0.084 0.916 19 C 0.004 3.996 20 N -0.894 5.894 21 Si 1.019 2.981 22 H -0.263 1.263 23 H -0.255 1.255 24 H -0.260 1.260 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.414 0.586 33 H 0.166 0.834 34 H 0.193 0.807 35 H 0.180 0.820 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 -3.816 0.348 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.309 3.691 5 O -0.413 6.413 6 N -0.312 5.312 7 C 0.102 3.898 8 C -0.168 4.168 9 C -0.054 4.054 10 C -0.178 4.178 11 C 0.106 3.894 12 F -0.124 7.124 13 C -0.192 4.192 14 C 0.290 3.710 15 O -0.465 6.465 16 O -0.133 6.133 17 C -0.501 4.501 18 H 0.102 0.898 19 C -0.198 4.198 20 N -0.530 5.530 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.179 1.179 24 H -0.184 1.184 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.142 0.858 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.251 0.749 33 H 0.183 0.817 34 H 0.210 0.790 35 H 0.197 0.803 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.107 -3.933 0.777 14.665 hybrid contribution 1.644 1.107 -0.273 2.001 sum -12.462 -2.826 0.504 12.789 Atomic orbital electron populations 1.21620 0.90529 1.03070 1.03127 1.21464 0.99575 0.97277 0.94653 1.21854 1.00715 0.93881 1.04161 1.21690 0.80104 0.78672 0.88627 1.90600 1.55171 1.48524 1.46968 1.43769 1.09355 1.50020 1.28095 1.17701 0.91070 0.91959 0.89106 1.21624 1.01711 0.93941 0.99505 1.21562 0.93695 0.97622 0.92489 1.21436 0.95124 0.97575 1.03681 1.17859 0.81502 0.96810 0.93269 1.91489 1.42219 1.93911 1.84756 1.19090 0.97131 1.01332 1.01623 1.21133 0.81382 0.87802 0.80636 1.90636 1.69492 1.24654 1.61678 1.84073 1.44490 1.40529 1.44193 1.21512 1.19891 0.89206 1.19519 0.89828 1.26585 0.97035 1.01446 0.94721 1.70071 1.34755 1.23145 1.24987 0.84622 0.77559 0.75887 0.78280 1.18791 1.17867 1.18386 0.92917 0.89056 0.91934 0.85839 0.88097 0.92690 0.93662 0.74945 0.81698 0.78990 0.80254 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.48 71.98 0.61 -1.63 16 2 C -0.11 -2.35 3.27 -11.54 -0.04 -2.39 16 3 C -0.15 -3.25 9.09 71.98 0.65 -2.60 16 4 C 0.52 15.48 6.95 87.66 0.61 16.09 16 5 O -0.54 -17.37 13.14 -3.03 -0.04 -17.41 16 6 N -0.67 -23.55 5.08 -302.92 -1.54 -25.09 16 7 C 0.20 7.47 6.44 38.62 0.25 7.72 16 8 C -0.15 -4.36 8.70 22.36 0.19 -4.16 16 9 C -0.04 -0.81 10.02 22.29 0.22 -0.59 16 10 C -0.16 -4.25 10.00 22.29 0.22 -4.03 16 11 C 0.13 4.91 7.29 22.68 0.17 5.07 16 12 F -0.15 -6.28 16.83 44.97 0.76 -5.53 16 13 C -0.19 -8.32 5.77 -19.97 -0.12 -8.43 16 14 C 0.44 24.17 5.89 70.17 0.41 24.58 16 15 O -0.57 -33.49 16.36 19.63 0.32 -33.17 16 16 O -0.23 -13.63 9.75 10.56 0.10 -13.53 16 17 C -0.43 -25.79 9.65 67.95 0.66 -25.14 16 18 H 0.08 5.14 6.86 -2.91 -0.02 5.12 16 19 C 0.00 0.22 5.49 84.88 0.47 0.69 16 20 N -0.89 -51.83 13.67 21.63 0.30 -51.53 16 21 Si 1.02 42.38 29.55 68.60 2.03 44.41 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 28 H 0.12 2.21 8.14 -2.39 -0.02 2.20 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.18 7.45 -2.39 -0.02 1.17 16 32 H 0.41 15.45 7.17 -92.70 -0.66 14.78 16 33 H 0.17 4.57 5.77 -2.91 -0.02 4.55 16 34 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 36 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -78.39 323.19 6.70 -71.68 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.47 Total: 24.98 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.31 Total: 5.19 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.24 Total: -76.63 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: 0.38 Total: -64.11 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 0.76 Total: -5.53 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -78.39 6.70 -71.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734039242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.600 kcal (2) G-P(sol) polarization free energy of solvation -78.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds