Wall clock time and date at job start Tue Mar 31 2020 07:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50700 * 109.47545 * 240.00201 * 2 1 3 5 5 O 1.21291 * 119.99966 * 259.43046 * 4 2 1 6 6 N 1.34779 * 120.00066 * 79.41513 * 4 2 1 7 7 C 1.37090 * 119.99864 * 3.00890 * 6 4 2 8 8 H 1.07997 * 120.00360 * 12.82063 * 7 6 4 9 9 C 1.38958 * 119.99660 * 192.82731 * 7 6 4 10 10 N 1.31404 * 119.99965 * 27.30272 * 9 7 6 11 11 Si 1.86802 * 119.99718 * 207.30206 * 9 7 6 12 12 H 1.48493 * 109.46988 * 94.98290 * 11 9 7 13 13 H 1.48499 * 109.46939 * 214.98192 * 11 9 7 14 14 H 1.48497 * 109.47190 * 334.97732 * 11 9 7 15 15 C 1.46496 * 119.99745 * 182.99641 * 6 4 2 16 16 C 1.50702 * 109.47311 * 84.48164 * 15 6 4 17 17 O 1.20828 * 119.99658 * 359.97438 * 16 15 6 18 18 O 1.34225 * 120.00449 * 179.97438 * 16 15 6 19 19 C 1.50698 * 109.47262 * 119.99747 * 2 1 3 20 20 C 1.38216 * 120.00971 * 60.00260 * 19 2 1 21 21 C 1.38228 * 120.02420 * 179.97438 * 20 19 2 22 22 C 1.38274 * 120.05130 * 359.97438 * 21 20 19 23 23 C 1.38175 * 120.02374 * 359.97438 * 22 21 20 24 24 C 1.38442 * 120.01327 * 239.97908 * 19 2 1 25 25 F 1.35097 * 120.02776 * 0.04618 * 24 19 2 26 26 H 1.09004 * 109.46837 * 174.40233 * 1 2 3 27 27 H 1.09001 * 109.47268 * 294.39897 * 1 2 3 28 28 H 1.08996 * 109.47031 * 54.40131 * 1 2 3 29 29 H 0.97003 * 120.00204 * 179.97438 * 10 9 7 30 30 H 1.09007 * 109.47234 * 204.47976 * 15 6 4 31 31 H 1.09003 * 109.47701 * 324.47895 * 15 6 4 32 32 H 0.96698 * 117.00035 * 179.97438 * 18 16 15 33 33 H 1.08000 * 119.99081 * 359.97438 * 20 19 2 34 34 H 1.07997 * 119.97330 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.98733 * 179.72046 * 22 21 20 36 36 H 1.08000 * 120.01502 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4163 -1.8584 -1.1537 6 7 2.0550 -0.0701 -2.4162 7 6 1.6792 1.2461 -2.4918 8 1 1.5654 1.8279 -1.5890 9 6 1.4446 1.8317 -3.7299 10 7 1.0536 1.0919 -4.7431 11 14 1.6852 3.6706 -3.9540 12 1 3.0473 3.9305 -4.4851 13 1 0.6739 4.1892 -4.9098 14 1 1.5253 4.3538 -2.6453 15 6 2.4813 -0.7807 -3.6243 16 6 1.3112 -1.5331 -4.2038 17 8 0.2321 -1.4815 -3.6629 18 8 1.4679 -2.2607 -5.3209 19 6 2.0324 -0.7103 1.2305 20 6 1.6987 -2.0336 1.4494 21 6 2.1597 -2.6856 2.5777 22 6 2.9556 -2.0152 3.4882 23 6 3.2913 -0.6926 3.2708 24 6 2.8287 -0.0379 2.1417 25 9 3.1551 1.2557 1.9289 26 1 -0.3633 -1.0228 -0.1002 27 1 -0.3634 0.4245 0.9359 28 1 -0.3633 0.5982 -0.8356 29 1 0.8894 1.5007 -5.6073 30 1 2.8505 -0.0629 -4.3569 31 1 3.2757 -1.4830 -3.3716 32 1 0.6887 -2.7260 -5.6546 33 1 1.0774 -2.5584 0.7388 34 1 1.8981 -3.7195 2.7482 35 1 3.3115 -2.5243 4.3717 36 1 3.9133 -0.1692 3.9819 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736200022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:08 Heat of formation + Delta-G solvation = -136.668307 kcal Electronic energy + Delta-G solvation = -24475.081097 eV Core-core repulsion = 20646.249302 eV Total energy + Delta-G solvation = -3828.831794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.55924 -39.68745 -38.88474 -37.85266 -35.24500 -34.58258 -33.54320 -31.66013 -30.22101 -29.22977 -27.69538 -25.00974 -23.98832 -22.37395 -21.79817 -20.43054 -19.10995 -17.43620 -17.02794 -16.95595 -16.53932 -15.64503 -15.54303 -15.34371 -15.21406 -14.44406 -14.39264 -14.31417 -13.78220 -13.57326 -13.23702 -12.96772 -12.72260 -12.25055 -11.91998 -11.78105 -11.72001 -11.51172 -11.43739 -11.35794 -10.98780 -10.74296 -10.54776 -10.44563 -10.34089 -10.17435 -9.64131 -9.07929 -8.65677 -8.59620 -8.23602 -8.05483 -6.59327 -4.00013 1.46140 1.55615 3.05340 3.18199 3.20915 3.54427 3.63874 3.85527 4.03015 4.26402 4.54725 4.65183 4.90160 5.02541 5.08548 5.25542 5.49084 5.66226 5.84730 5.86578 5.95803 6.16859 6.26446 6.33258 6.37251 6.46454 6.49654 6.53515 6.60651 6.67544 6.85360 6.91415 7.20516 7.34190 7.47719 7.57726 8.17533 8.92520 9.12096 9.30657 9.70653 10.48478 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.006102 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.151753 B = 4587.238013 C = 5756.300794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.058 4.058 3 H 0.100 0.900 4 C 0.478 3.522 5 O -0.597 6.597 6 N -0.424 5.424 7 C -0.341 4.341 8 H 0.108 0.892 9 C 0.040 3.960 10 N -0.861 5.861 11 Si 0.919 3.081 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.154 3.846 16 C 0.496 3.504 17 O -0.507 6.507 18 O -0.535 6.535 19 C -0.089 4.089 20 C -0.048 4.048 21 C -0.139 4.139 22 C -0.102 4.102 23 C -0.164 4.164 24 C 0.098 3.902 25 F -0.140 7.140 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.273 0.727 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.391 0.609 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 -2.702 8.053 8.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 H 0.118 0.882 4 C 0.267 3.733 5 O -0.483 6.483 6 N -0.142 5.142 7 C -0.467 4.467 8 H 0.125 0.875 9 C -0.166 4.166 10 N -0.498 5.498 11 Si 0.745 3.255 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.192 1.192 15 C 0.028 3.972 16 C 0.337 3.663 17 O -0.393 6.393 18 O -0.346 6.346 19 C -0.090 4.090 20 C -0.066 4.066 21 C -0.157 4.157 22 C -0.120 4.120 23 C -0.183 4.183 24 C 0.078 3.922 25 F -0.118 7.118 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.102 0.898 32 H 0.247 0.753 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.091 -2.936 8.160 8.921 hybrid contribution -0.501 0.986 -0.699 1.309 sum 1.589 -1.949 7.462 7.874 Atomic orbital electron populations 1.21591 0.92055 1.02638 1.02158 1.19977 0.97786 1.00152 0.90030 0.88207 1.19811 0.82386 0.86197 0.84923 1.90531 1.53392 1.18138 1.86253 1.43388 1.56477 1.10461 1.03888 1.19676 1.48207 0.84059 0.94780 0.87452 1.25169 0.95341 1.00418 0.95635 1.69959 1.39469 1.37244 1.03098 0.86037 0.78289 0.82509 0.78678 1.20152 1.21028 1.19159 1.20449 0.91728 0.95811 0.89226 1.23746 0.91277 0.74583 0.76693 1.90559 1.28151 1.59839 1.60720 1.84525 1.44537 1.61604 1.43917 1.19745 0.98377 0.95279 0.95630 1.20972 0.97460 0.92715 0.95469 1.21169 0.99421 1.00141 0.94958 1.20881 0.98105 0.93611 0.99379 1.20970 1.03671 0.96048 0.97609 1.17587 0.99215 0.79094 0.96254 1.91465 1.91056 1.34447 1.94864 0.92657 0.92925 0.90191 0.91680 0.86015 0.89752 0.75306 0.84838 0.85850 0.85706 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.82 37.16 0.33 -2.08 16 2 C -0.06 -1.19 2.08 -92.92 -0.19 -1.39 16 3 H 0.10 2.06 5.49 -51.93 -0.29 1.77 16 4 C 0.48 11.40 6.58 -10.98 -0.07 11.33 16 5 O -0.60 -15.12 14.25 5.55 0.08 -15.04 16 6 N -0.42 -10.44 2.17 -116.09 -0.25 -10.69 16 7 C -0.34 -8.36 8.38 -14.93 -0.13 -8.48 16 8 H 0.11 2.53 6.03 -52.49 -0.32 2.21 16 9 C 0.04 0.97 4.76 -17.47 -0.08 0.89 16 10 N -0.86 -21.71 9.59 55.50 0.53 -21.17 16 11 Si 0.92 18.95 29.63 -169.99 -5.04 13.91 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 15 C 0.15 3.62 5.17 -5.19 -0.03 3.59 16 16 C 0.50 11.82 6.60 36.01 0.24 12.05 16 17 O -0.51 -13.59 16.88 -18.75 -0.32 -13.90 16 18 O -0.53 -10.52 13.42 -39.24 -0.53 -11.04 16 19 C -0.09 -1.66 4.60 -104.56 -0.48 -2.14 16 20 C -0.05 -0.83 7.91 -39.59 -0.31 -1.15 16 21 C -0.14 -1.96 10.05 -39.57 -0.40 -2.35 16 22 C -0.10 -1.30 10.04 -39.59 -0.40 -1.70 16 23 C -0.16 -2.32 10.03 -39.51 -0.40 -2.71 16 24 C 0.10 1.68 7.25 -39.42 -0.29 1.39 16 25 F -0.14 -2.48 16.19 2.25 0.04 -2.44 16 26 H 0.05 1.06 7.59 -51.93 -0.39 0.67 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.12 2.86 6.31 -51.92 -0.33 2.53 16 31 H 0.08 1.88 7.55 -51.93 -0.39 1.48 16 32 H 0.39 5.93 9.10 45.56 0.41 6.34 16 33 H 0.13 2.45 7.10 -52.49 -0.37 2.08 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -30.56 312.94 -5.86 -36.42 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -2.88 Total: 11.99 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -2.21 Total: 7.25 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.28 Total: -31.86 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.76 Total: -39.99 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.04 Total: 13.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.56 -5.86 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736200022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.250 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds