Wall clock time and date at job start Tue Mar 31 2020 07:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50700 * 109.47545 * 240.00201 * 2 1 3 5 5 O 1.21291 * 119.99966 * 259.43046 * 4 2 1 6 6 N 1.34779 * 120.00066 * 79.41513 * 4 2 1 7 7 C 1.37090 * 119.99864 * 3.00890 * 6 4 2 8 8 H 1.07997 * 120.00360 * 12.82063 * 7 6 4 9 9 C 1.38958 * 119.99660 * 192.82731 * 7 6 4 10 10 N 1.31404 * 119.99965 * 27.30272 * 9 7 6 11 11 Si 1.86802 * 119.99718 * 207.30206 * 9 7 6 12 12 H 1.48493 * 109.46988 * 94.98290 * 11 9 7 13 13 H 1.48499 * 109.46939 * 214.98192 * 11 9 7 14 14 H 1.48497 * 109.47190 * 334.97732 * 11 9 7 15 15 C 1.46496 * 119.99745 * 182.99641 * 6 4 2 16 16 C 1.50702 * 109.47311 * 84.48164 * 15 6 4 17 17 O 1.20828 * 119.99658 * 359.97438 * 16 15 6 18 18 O 1.34225 * 120.00449 * 179.97438 * 16 15 6 19 19 C 1.50698 * 109.47262 * 119.99747 * 2 1 3 20 20 C 1.38216 * 120.00971 * 60.00260 * 19 2 1 21 21 C 1.38228 * 120.02420 * 179.97438 * 20 19 2 22 22 C 1.38274 * 120.05130 * 359.97438 * 21 20 19 23 23 C 1.38175 * 120.02374 * 359.97438 * 22 21 20 24 24 C 1.38442 * 120.01327 * 239.97908 * 19 2 1 25 25 F 1.35097 * 120.02776 * 0.04618 * 24 19 2 26 26 H 1.09004 * 109.46837 * 174.40233 * 1 2 3 27 27 H 1.09001 * 109.47268 * 294.39897 * 1 2 3 28 28 H 1.08996 * 109.47031 * 54.40131 * 1 2 3 29 29 H 0.97003 * 120.00204 * 179.97438 * 10 9 7 30 30 H 1.09007 * 109.47234 * 204.47976 * 15 6 4 31 31 H 1.09003 * 109.47701 * 324.47895 * 15 6 4 32 32 H 0.96698 * 117.00035 * 179.97438 * 18 16 15 33 33 H 1.08000 * 119.99081 * 359.97438 * 20 19 2 34 34 H 1.07997 * 119.97330 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.98733 * 179.72046 * 22 21 20 36 36 H 1.08000 * 120.01502 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.4163 -1.8584 -1.1537 6 7 2.0550 -0.0701 -2.4162 7 6 1.6792 1.2461 -2.4918 8 1 1.5654 1.8279 -1.5890 9 6 1.4446 1.8317 -3.7299 10 7 1.0536 1.0919 -4.7431 11 14 1.6852 3.6706 -3.9540 12 1 3.0473 3.9305 -4.4851 13 1 0.6739 4.1892 -4.9098 14 1 1.5253 4.3538 -2.6453 15 6 2.4813 -0.7807 -3.6243 16 6 1.3112 -1.5331 -4.2038 17 8 0.2321 -1.4815 -3.6629 18 8 1.4679 -2.2607 -5.3209 19 6 2.0324 -0.7103 1.2305 20 6 1.6987 -2.0336 1.4494 21 6 2.1597 -2.6856 2.5777 22 6 2.9556 -2.0152 3.4882 23 6 3.2913 -0.6926 3.2708 24 6 2.8287 -0.0379 2.1417 25 9 3.1551 1.2557 1.9289 26 1 -0.3633 -1.0228 -0.1002 27 1 -0.3634 0.4245 0.9359 28 1 -0.3633 0.5982 -0.8356 29 1 0.8894 1.5007 -5.6073 30 1 2.8505 -0.0629 -4.3569 31 1 3.2757 -1.4830 -3.3716 32 1 0.6887 -2.7260 -5.6546 33 1 1.0774 -2.5584 0.7388 34 1 1.8981 -3.7195 2.7482 35 1 3.3115 -2.5243 4.3717 36 1 3.9133 -0.1692 3.9819 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736200022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:07 Heat of formation + Delta-G solvation = -154.885377 kcal Electronic energy + Delta-G solvation = -24475.871048 eV Core-core repulsion = 20646.249302 eV Total energy + Delta-G solvation = -3829.621746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.86035 -41.43473 -40.49441 -39.37774 -37.04284 -36.45697 -35.06306 -33.53859 -31.40375 -30.64024 -29.45065 -26.86644 -25.49875 -23.67778 -23.27218 -22.05753 -20.90763 -19.01394 -18.76825 -18.51018 -18.12294 -17.37925 -17.09562 -16.72348 -16.55609 -16.23334 -16.10645 -15.95184 -15.39734 -15.01307 -14.63938 -14.60742 -14.03714 -13.90151 -13.62298 -13.37284 -13.25397 -13.00680 -12.92659 -12.83846 -12.67100 -12.43990 -12.18625 -12.12088 -11.94579 -11.70481 -11.54851 -10.96593 -10.41872 -9.95058 -9.79882 -9.52585 -8.44950 -5.91358 0.25744 0.37712 1.38367 1.48657 1.59313 1.70398 1.80884 2.24897 2.49222 2.68069 2.92800 3.09249 3.38414 3.65826 3.87409 4.10271 4.19385 4.29508 4.36386 4.44074 4.48604 4.52588 4.66157 4.79498 4.89105 4.93218 5.02774 5.18418 5.21371 5.31670 5.45498 5.52285 5.61186 5.63584 5.88465 6.04586 6.29636 7.04386 7.33697 7.45163 7.84512 8.63108 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.006102 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.151753 B = 4587.238013 C = 5756.300794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.053 4.053 3 H 0.093 0.907 4 C 0.467 3.533 5 O -0.619 6.619 6 N -0.435 5.435 7 C -0.357 4.357 8 H 0.111 0.889 9 C 0.004 3.996 10 N -0.885 5.885 11 Si 0.985 3.015 12 H -0.270 1.270 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.149 3.851 16 C 0.500 3.500 17 O -0.544 6.544 18 O -0.522 6.522 19 C -0.116 4.116 20 C -0.068 4.068 21 C -0.133 4.133 22 C -0.086 4.086 23 C -0.156 4.156 24 C 0.076 3.924 25 F -0.149 7.149 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.274 0.726 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.413 0.587 33 H 0.111 0.889 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -2.717 9.899 10.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.257 3.743 5 O -0.506 6.506 6 N -0.153 5.153 7 C -0.484 4.484 8 H 0.128 0.872 9 C -0.200 4.200 10 N -0.523 5.523 11 Si 0.809 3.191 12 H -0.195 1.195 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.024 3.976 16 C 0.342 3.658 17 O -0.433 6.433 18 O -0.334 6.334 19 C -0.117 4.117 20 C -0.087 4.087 21 C -0.151 4.151 22 C -0.104 4.104 23 C -0.175 4.175 24 C 0.056 3.944 25 F -0.128 7.128 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.272 0.728 33 H 0.129 0.871 34 H 0.170 0.830 35 H 0.189 0.811 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.940 -2.965 9.988 10.826 hybrid contribution -0.753 0.861 -1.274 1.712 sum 2.187 -2.104 8.714 9.227 Atomic orbital electron populations 1.21483 0.91472 1.01741 1.02597 1.19877 0.98219 0.99544 0.89737 0.88937 1.20470 0.81841 0.86239 0.85755 1.90486 1.54275 1.19067 1.86789 1.43608 1.56523 1.10802 1.04380 1.19933 1.48821 0.84273 0.95333 0.87186 1.25962 0.94595 1.04296 0.95110 1.70037 1.40054 1.38802 1.03420 0.85030 0.78054 0.77481 0.78532 1.19546 1.21271 1.18564 1.20501 0.92013 0.95912 0.89215 1.23745 0.90647 0.74325 0.77057 1.90540 1.29387 1.61342 1.62005 1.84450 1.45745 1.60980 1.42214 1.19667 1.00399 0.96090 0.95530 1.20918 0.98479 0.92497 0.96776 1.21524 0.98510 1.01406 0.93663 1.21397 0.96081 0.92920 0.99956 1.21385 1.02836 0.96637 0.96603 1.17865 1.00042 0.79022 0.97423 1.91433 1.91207 1.35106 1.95075 0.93583 0.90064 0.92509 0.91625 0.86218 0.89082 0.72766 0.87062 0.82966 0.81140 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.82 71.98 0.64 -3.90 16 2 C -0.05 -2.23 2.08 -12.29 -0.03 -2.25 16 3 H 0.09 3.95 5.49 -2.39 -0.01 3.94 16 4 C 0.47 23.06 6.58 87.66 0.58 23.63 16 5 O -0.62 -32.36 14.25 -3.06 -0.04 -32.41 16 6 N -0.44 -22.07 2.17 -639.59 -1.39 -23.46 16 7 C -0.36 -17.92 8.38 84.04 0.70 -17.22 16 8 H 0.11 5.32 6.03 -2.91 -0.02 5.31 16 9 C 0.00 0.17 4.76 84.93 0.40 0.58 16 10 N -0.89 -45.17 9.59 21.66 0.21 -44.96 16 11 Si 0.99 38.93 29.63 68.60 2.03 40.96 16 12 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 13 H -0.29 -11.38 7.11 99.48 0.71 -10.67 16 14 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 15 C 0.15 7.20 5.17 85.63 0.44 7.64 16 16 C 0.50 24.20 6.60 71.24 0.47 24.67 16 17 O -0.54 -29.91 16.88 21.96 0.37 -29.54 16 18 O -0.52 -20.30 13.42 -51.37 -0.69 -20.99 16 19 C -0.12 -4.32 4.60 -19.82 -0.09 -4.41 16 20 C -0.07 -2.36 7.91 22.26 0.18 -2.18 16 21 C -0.13 -3.40 10.05 22.28 0.22 -3.17 16 22 C -0.09 -1.83 10.04 22.26 0.22 -1.60 16 23 C -0.16 -3.90 10.03 22.31 0.22 -3.67 16 24 C 0.08 2.52 7.25 22.38 0.16 2.68 16 25 F -0.15 -5.24 16.19 44.97 0.73 -4.52 16 26 H 0.05 1.85 7.59 -2.38 -0.02 1.83 16 27 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.06 2.45 7.42 -2.39 -0.02 2.44 16 29 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 30 H 0.12 5.75 6.31 -2.38 -0.02 5.74 16 31 H 0.09 4.17 7.55 -2.39 -0.02 4.15 16 32 H 0.41 12.15 9.10 -74.06 -0.67 11.47 16 33 H 0.11 4.24 7.10 -2.91 -0.02 4.22 16 34 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -67.38 312.94 5.81 -61.57 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.47 Total: 32.54 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 4.13 Total: 20.80 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -1.18 Total: -68.43 kcal Atomic # 8 Polarization: -82.57 SS G_CDS: -0.36 Total: -82.93 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.73 Total: -4.52 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -67.38 5.81 -61.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736200022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.312 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds