Wall clock time and date at job start Tue Mar 31 2020 07:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47149 * 2 1 4 4 C 1.50700 * 109.47016 * 120.00051 * 2 1 3 5 5 O 1.21291 * 120.00059 * 109.06440 * 4 2 1 6 6 N 1.34780 * 119.99797 * 289.05642 * 4 2 1 7 7 C 1.37102 * 119.99891 * 5.65684 * 6 4 2 8 8 H 1.07993 * 120.00004 * 343.36496 * 7 6 4 9 9 C 1.38957 * 119.99744 * 163.36245 * 7 6 4 10 10 N 1.31413 * 119.99798 * 337.01584 * 9 7 6 11 11 Si 1.86792 * 119.99818 * 157.01079 * 9 7 6 12 12 H 1.48507 * 109.47266 * 60.00438 * 11 9 7 13 13 H 1.48502 * 109.47224 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47578 * 300.00423 * 11 9 7 15 15 C 1.46502 * 120.00114 * 185.65301 * 6 4 2 16 16 C 1.50702 * 109.47010 * 274.94410 * 15 6 4 17 17 O 1.20823 * 119.99951 * 359.97438 * 16 15 6 18 18 O 1.34227 * 119.99552 * 179.97438 * 16 15 6 19 19 C 1.50700 * 109.46969 * 239.99641 * 2 1 3 20 20 C 1.38263 * 119.98531 * 119.99839 * 19 2 1 21 21 C 1.38222 * 120.05314 * 179.97438 * 20 19 2 22 22 C 1.38221 * 120.02521 * 0.02562 * 21 20 19 23 23 C 1.38445 * 119.97027 * 0.02562 * 22 21 20 24 24 F 1.35102 * 120.02228 * 180.02562 * 23 22 21 25 25 C 1.38176 * 119.98857 * 299.72740 * 19 2 1 26 26 H 1.09000 * 109.47254 * 183.45119 * 1 2 3 27 27 H 1.09006 * 109.47047 * 303.45082 * 1 2 3 28 28 H 1.08997 * 109.47041 * 63.44536 * 1 2 3 29 29 H 0.96999 * 119.99581 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.47081 * 34.94242 * 15 6 4 31 31 H 1.08996 * 109.47387 * 154.94247 * 15 6 4 32 32 H 0.96708 * 117.00041 * 179.97438 * 18 16 15 33 33 H 1.08000 * 119.97512 * 0.02562 * 20 19 2 34 34 H 1.07997 * 119.99070 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.01499 * 180.02562 * 22 21 20 36 36 H 1.08007 * 120.01034 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5580 -1.7989 1.1302 6 7 1.8977 -0.1361 2.4423 7 6 1.2019 1.0382 2.5708 8 1 0.9945 1.6412 1.6992 9 6 0.7636 1.4526 3.8227 10 7 0.5978 0.5732 4.7850 11 14 0.4101 3.2596 4.1374 12 1 -0.6549 3.7241 3.2126 13 1 -0.0412 3.4385 5.5409 14 1 1.6447 4.0527 3.9089 15 6 2.4946 -0.7668 3.6222 16 6 1.5486 -1.8041 4.1701 17 8 0.4847 -1.9965 3.6306 18 8 1.8879 -2.5143 5.2573 19 6 2.0324 -0.7105 -1.2304 20 6 2.8272 -0.0383 -2.1404 21 6 3.2891 -0.6888 -3.2692 22 6 2.9564 -2.0121 -3.4897 23 6 2.1597 -2.6858 -2.5797 24 9 1.8342 -3.9794 -2.7940 25 6 1.7030 -2.0350 -1.4459 26 1 -0.3634 -1.0258 0.0619 27 1 -0.3633 0.5665 0.8575 28 1 -0.3633 0.4594 -0.9192 29 1 0.2915 0.8625 5.6588 30 1 3.4343 -1.2434 3.3432 31 1 2.6832 -0.0093 4.3829 32 1 1.2485 -3.1680 5.5720 33 1 3.0880 0.9956 -1.9687 34 1 3.9102 -0.1629 -3.9791 35 1 3.3177 -2.5203 -4.3715 36 1 1.0854 -2.5610 -0.7329 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736202190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:10 Heat of formation + Delta-G solvation = -137.451756 kcal Electronic energy + Delta-G solvation = -24253.734790 eV Core-core repulsion = 20424.869023 eV Total energy + Delta-G solvation = -3828.865767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.57411 -39.77340 -38.89291 -37.81097 -35.20751 -34.54189 -33.50839 -31.66021 -30.24345 -29.35271 -27.58657 -25.11838 -23.92164 -22.37095 -21.79793 -20.47089 -19.14237 -17.49472 -16.94459 -16.78419 -16.23824 -15.87523 -15.60513 -15.52161 -15.26434 -14.46202 -14.44422 -14.33836 -13.74836 -13.51613 -13.16301 -13.01277 -12.85195 -12.22841 -11.91371 -11.78230 -11.68810 -11.51401 -11.39683 -11.33635 -10.98165 -10.68210 -10.53410 -10.48983 -10.44080 -10.22055 -9.59134 -9.08233 -8.66449 -8.57870 -8.29256 -8.02966 -6.58040 -4.04832 1.44911 1.55584 3.03765 3.14575 3.15503 3.57063 3.69970 3.83211 4.01814 4.26854 4.53469 4.63077 4.91342 4.96624 5.10401 5.30039 5.46786 5.69370 5.78557 5.83876 5.91451 6.13895 6.25048 6.30570 6.41856 6.43037 6.47834 6.52864 6.58173 6.64304 6.85482 6.98740 7.19941 7.29042 7.50566 7.64121 8.15221 8.90759 9.18563 9.30121 9.69500 10.49683 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.005425 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.237017 B = 5159.675216 C = 6186.893877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 H 0.097 0.903 4 C 0.476 3.524 5 O -0.592 6.592 6 N -0.427 5.427 7 C -0.340 4.340 8 H 0.108 0.892 9 C 0.039 3.961 10 N -0.864 5.864 11 Si 0.922 3.078 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.159 3.841 16 C 0.498 3.502 17 O -0.505 6.505 18 O -0.537 6.537 19 C -0.025 4.025 20 C -0.127 4.127 21 C -0.100 4.100 22 C -0.164 4.164 23 C 0.088 3.912 24 F -0.146 7.146 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.273 0.727 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.390 0.610 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 1.237 -7.716 8.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 H 0.116 0.884 4 C 0.265 3.735 5 O -0.477 6.477 6 N -0.146 5.146 7 C -0.467 4.467 8 H 0.126 0.874 9 C -0.167 4.167 10 N -0.502 5.502 11 Si 0.748 3.252 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.033 3.967 16 C 0.338 3.662 17 O -0.390 6.390 18 O -0.348 6.348 19 C -0.026 4.026 20 C -0.146 4.146 21 C -0.118 4.118 22 C -0.183 4.183 23 C 0.069 3.931 24 F -0.125 7.125 25 C -0.127 4.127 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.246 0.754 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.318 0.905 -7.839 8.561 hybrid contribution -0.875 0.218 0.668 1.122 sum 2.443 1.122 -7.171 7.659 Atomic orbital electron populations 1.21782 0.92171 1.02911 1.02729 1.20042 0.97878 0.99521 0.90181 0.88449 1.19903 0.83055 0.85733 0.84835 1.90573 1.49350 1.21133 1.86676 1.43349 1.46628 1.21121 1.03492 1.19601 1.34951 0.96585 0.95573 0.87436 1.25205 0.95866 0.99633 0.95988 1.69848 1.42368 1.33387 1.04555 0.86070 0.78932 0.82429 0.77752 1.19715 1.20935 1.19703 1.20398 0.92425 0.93895 0.89980 1.23649 0.87383 0.78825 0.76331 1.90553 1.24187 1.64980 1.59304 1.84521 1.51995 1.51768 1.46551 1.19486 0.95234 0.93093 0.94794 1.21099 0.98484 1.00391 0.94587 1.20837 0.99683 0.93696 0.97612 1.21001 1.01221 0.95919 1.00186 1.17717 0.99992 0.78898 0.96501 1.91461 1.91312 1.34821 1.94885 1.21015 1.01203 0.95036 0.95412 0.92769 0.89215 0.92986 0.91608 0.90114 0.86309 0.75391 0.85548 0.85493 0.85470 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.62 37.16 0.32 -2.19 16 2 C -0.06 -1.04 2.06 -92.92 -0.19 -1.23 16 3 H 0.10 1.67 7.07 -51.93 -0.37 1.30 16 4 C 0.48 11.00 6.69 -10.98 -0.07 10.93 16 5 O -0.59 -15.07 14.46 5.55 0.08 -14.99 16 6 N -0.43 -10.17 2.16 -116.09 -0.25 -10.42 16 7 C -0.34 -7.94 7.80 -14.93 -0.12 -8.06 16 8 H 0.11 2.31 5.50 -52.49 -0.29 2.02 16 9 C 0.04 0.91 4.83 -17.46 -0.08 0.82 16 10 N -0.86 -21.54 9.24 55.50 0.51 -21.03 16 11 Si 0.92 18.26 29.61 -169.99 -5.03 13.22 16 12 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 15 C 0.16 3.68 5.11 -5.19 -0.03 3.65 16 16 C 0.50 11.95 6.46 36.01 0.23 12.19 16 17 O -0.51 -13.78 16.70 -18.75 -0.31 -14.10 16 18 O -0.54 -10.74 13.42 -39.25 -0.53 -11.27 16 19 C -0.03 -0.45 4.51 -104.64 -0.47 -0.92 16 20 C -0.13 -1.85 9.67 -39.58 -0.38 -2.23 16 21 C -0.10 -1.29 10.04 -39.59 -0.40 -1.69 16 22 C -0.16 -2.30 10.03 -39.51 -0.40 -2.69 16 23 C 0.09 1.48 7.30 -39.42 -0.29 1.19 16 24 F -0.15 -2.50 17.27 2.25 0.04 -2.46 16 25 C -0.11 -2.00 7.85 -39.52 -0.31 -2.31 16 26 H 0.05 1.05 7.53 -51.93 -0.39 0.65 16 27 H 0.09 1.77 5.87 -51.93 -0.30 1.47 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.08 1.76 7.66 -51.93 -0.40 1.36 16 31 H 0.12 2.72 6.49 -51.93 -0.34 2.38 16 32 H 0.39 6.11 9.10 45.56 0.41 6.52 16 33 H 0.13 1.54 7.94 -52.49 -0.42 1.12 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.13 2.74 7.29 -52.48 -0.38 2.36 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -30.58 312.19 -5.85 -36.43 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -2.87 Total: 12.44 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.19 Total: 7.46 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.26 Total: -31.45 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.76 Total: -40.36 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.58 -5.85 -36.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736202190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.021 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds