Wall clock time and date at job start Tue Mar 31 2020 07:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47149 * 2 1 4 4 C 1.50700 * 109.47016 * 120.00051 * 2 1 3 5 5 O 1.21291 * 120.00059 * 109.06440 * 4 2 1 6 6 N 1.34780 * 119.99797 * 289.05642 * 4 2 1 7 7 C 1.37102 * 119.99891 * 5.65684 * 6 4 2 8 8 H 1.07993 * 120.00004 * 343.36496 * 7 6 4 9 9 C 1.38957 * 119.99744 * 163.36245 * 7 6 4 10 10 N 1.31413 * 119.99798 * 337.01584 * 9 7 6 11 11 Si 1.86792 * 119.99818 * 157.01079 * 9 7 6 12 12 H 1.48507 * 109.47266 * 60.00438 * 11 9 7 13 13 H 1.48502 * 109.47224 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47578 * 300.00423 * 11 9 7 15 15 C 1.46502 * 120.00114 * 185.65301 * 6 4 2 16 16 C 1.50702 * 109.47010 * 274.94410 * 15 6 4 17 17 O 1.20823 * 119.99951 * 359.97438 * 16 15 6 18 18 O 1.34227 * 119.99552 * 179.97438 * 16 15 6 19 19 C 1.50700 * 109.46969 * 239.99641 * 2 1 3 20 20 C 1.38263 * 119.98531 * 119.99839 * 19 2 1 21 21 C 1.38222 * 120.05314 * 179.97438 * 20 19 2 22 22 C 1.38221 * 120.02521 * 0.02562 * 21 20 19 23 23 C 1.38445 * 119.97027 * 0.02562 * 22 21 20 24 24 F 1.35102 * 120.02228 * 180.02562 * 23 22 21 25 25 C 1.38176 * 119.98857 * 299.72740 * 19 2 1 26 26 H 1.09000 * 109.47254 * 183.45119 * 1 2 3 27 27 H 1.09006 * 109.47047 * 303.45082 * 1 2 3 28 28 H 1.08997 * 109.47041 * 63.44536 * 1 2 3 29 29 H 0.96999 * 119.99581 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.47081 * 34.94242 * 15 6 4 31 31 H 1.08996 * 109.47387 * 154.94247 * 15 6 4 32 32 H 0.96708 * 117.00041 * 179.97438 * 18 16 15 33 33 H 1.08000 * 119.97512 * 0.02562 * 20 19 2 34 34 H 1.07997 * 119.99070 * 180.02562 * 21 20 19 35 35 H 1.07996 * 120.01499 * 180.02562 * 22 21 20 36 36 H 1.08007 * 120.01034 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.5580 -1.7989 1.1302 6 7 1.8977 -0.1361 2.4423 7 6 1.2019 1.0382 2.5708 8 1 0.9945 1.6412 1.6992 9 6 0.7636 1.4526 3.8227 10 7 0.5978 0.5732 4.7850 11 14 0.4101 3.2596 4.1374 12 1 -0.6549 3.7241 3.2126 13 1 -0.0412 3.4385 5.5409 14 1 1.6447 4.0527 3.9089 15 6 2.4946 -0.7668 3.6222 16 6 1.5486 -1.8041 4.1701 17 8 0.4847 -1.9965 3.6306 18 8 1.8879 -2.5143 5.2573 19 6 2.0324 -0.7105 -1.2304 20 6 2.8272 -0.0383 -2.1404 21 6 3.2891 -0.6888 -3.2692 22 6 2.9564 -2.0121 -3.4897 23 6 2.1597 -2.6858 -2.5797 24 9 1.8342 -3.9794 -2.7940 25 6 1.7030 -2.0350 -1.4459 26 1 -0.3634 -1.0258 0.0619 27 1 -0.3633 0.5665 0.8575 28 1 -0.3633 0.4594 -0.9192 29 1 0.2915 0.8625 5.6588 30 1 3.4343 -1.2434 3.3432 31 1 2.6832 -0.0093 4.3829 32 1 1.2485 -3.1680 5.5720 33 1 3.0880 0.9956 -1.9687 34 1 3.9102 -0.1629 -3.9791 35 1 3.3177 -2.5203 -4.3715 36 1 1.0854 -2.5610 -0.7329 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736202190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:09 Heat of formation + Delta-G solvation = -156.000585 kcal Electronic energy + Delta-G solvation = -24254.539127 eV Core-core repulsion = 20424.869023 eV Total energy + Delta-G solvation = -3829.670105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.86657 -41.44490 -40.52467 -39.35328 -36.99520 -36.41603 -34.96326 -33.46705 -31.44832 -30.72869 -29.30415 -26.89087 -25.38378 -23.63983 -23.29553 -22.08221 -20.87163 -19.08846 -18.77006 -18.28727 -17.79286 -17.35391 -17.05512 -16.99910 -16.57540 -16.20573 -16.18425 -16.01475 -15.36520 -14.90120 -14.62717 -14.50851 -14.19133 -13.82874 -13.57012 -13.37737 -13.21354 -12.94178 -12.84728 -12.69180 -12.56873 -12.22972 -12.16995 -12.15321 -12.04286 -11.77076 -11.47435 -10.93060 -10.37950 -9.87692 -9.80014 -9.55361 -8.36069 -5.88312 0.25461 0.36417 1.45892 1.54261 1.62695 1.77513 1.87056 2.30474 2.52262 2.68181 2.98145 3.17676 3.32050 3.71653 3.90546 4.15306 4.18785 4.33257 4.36330 4.46454 4.49205 4.56307 4.68787 4.85167 4.91731 4.98912 5.05523 5.19896 5.25133 5.34980 5.42281 5.51548 5.68439 5.73216 5.92224 6.03724 6.34816 7.10538 7.38453 7.51124 7.90743 8.71813 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.005425 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.237017 B = 5159.675216 C = 6186.893877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.048 4.048 3 H 0.120 0.880 4 C 0.463 3.537 5 O -0.624 6.624 6 N -0.438 5.438 7 C -0.350 4.350 8 H 0.125 0.875 9 C -0.005 4.005 10 N -0.896 5.896 11 Si 0.991 3.009 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.260 1.260 15 C 0.155 3.845 16 C 0.499 3.501 17 O -0.547 6.547 18 O -0.525 6.525 19 C -0.046 4.046 20 C -0.122 4.122 21 C -0.085 4.085 22 C -0.154 4.154 23 C 0.065 3.935 24 F -0.156 7.156 25 C -0.134 4.134 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.270 0.730 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.410 0.590 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 3.529 -9.750 11.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.069 4.069 3 H 0.138 0.862 4 C 0.254 3.746 5 O -0.511 6.511 6 N -0.156 5.156 7 C -0.476 4.476 8 H 0.142 0.858 9 C -0.207 4.207 10 N -0.535 5.535 11 Si 0.815 3.185 12 H -0.191 1.191 13 H -0.219 1.219 14 H -0.185 1.185 15 C 0.029 3.971 16 C 0.342 3.658 17 O -0.435 6.435 18 O -0.338 6.338 19 C -0.047 4.047 20 C -0.139 4.139 21 C -0.103 4.103 22 C -0.172 4.172 23 C 0.046 3.954 24 F -0.135 7.135 25 C -0.153 4.153 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.269 0.731 33 H 0.175 0.825 34 H 0.192 0.808 35 H 0.176 0.824 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.557 3.190 -9.864 11.325 hybrid contribution -1.223 -0.597 1.307 1.887 sum 3.333 2.593 -8.558 9.543 Atomic orbital electron populations 1.21688 0.92108 1.01263 1.03600 1.20030 0.97851 1.00193 0.88835 0.86196 1.20754 0.82354 0.85621 0.85914 1.90537 1.50676 1.22616 1.87319 1.43624 1.46668 1.21505 1.03815 1.20046 1.34769 0.96450 0.96385 0.85755 1.26076 0.95619 1.03321 0.95643 1.69961 1.43685 1.35043 1.04791 0.85010 0.79101 0.77491 0.76908 1.19087 1.21880 1.18472 1.20469 0.92603 0.93817 0.90220 1.23838 0.86793 0.78710 0.76477 1.90531 1.25858 1.66406 1.60725 1.84455 1.52401 1.51881 1.45022 1.19473 0.97097 0.92823 0.95275 1.21471 0.96759 1.01680 0.94038 1.21373 0.98492 0.93033 0.97355 1.21418 0.99322 0.96466 1.00030 1.17982 1.01417 0.78858 0.97116 1.91428 1.91604 1.35498 1.94930 1.20849 1.02469 0.96004 0.95981 0.95340 0.90993 0.89539 0.91990 0.89454 0.86274 0.73065 0.82544 0.80801 0.82362 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 8.62 71.98 0.62 -4.09 16 2 C -0.05 -1.80 2.06 -12.28 -0.03 -1.82 16 3 H 0.12 3.85 7.07 -2.38 -0.02 3.83 16 4 C 0.46 21.87 6.69 87.66 0.59 22.45 16 5 O -0.62 -33.01 14.46 -3.06 -0.04 -33.05 16 6 N -0.44 -21.17 2.16 -639.59 -1.38 -22.55 16 7 C -0.35 -16.27 7.80 84.04 0.66 -15.62 16 8 H 0.13 5.20 5.50 -2.91 -0.02 5.18 16 9 C 0.00 -0.22 4.83 84.93 0.41 0.19 16 10 N -0.90 -45.28 9.24 21.67 0.20 -45.08 16 11 Si 0.99 36.83 29.61 68.60 2.03 38.86 16 12 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 13 H -0.29 -11.21 7.11 99.48 0.71 -10.51 16 14 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 15 C 0.15 7.34 5.11 85.63 0.44 7.78 16 16 C 0.50 24.64 6.46 71.24 0.46 25.10 16 17 O -0.55 -30.97 16.70 21.97 0.37 -30.60 16 18 O -0.53 -21.16 13.42 -51.39 -0.69 -21.85 16 19 C -0.05 -1.58 4.51 -19.87 -0.09 -1.67 16 20 C -0.12 -3.08 9.67 22.27 0.22 -2.87 16 21 C -0.08 -1.78 10.04 22.26 0.22 -1.56 16 22 C -0.15 -3.80 10.03 22.31 0.22 -3.58 16 23 C 0.07 2.17 7.30 22.38 0.16 2.34 16 24 F -0.16 -5.43 17.27 44.97 0.78 -4.66 16 25 C -0.13 -5.11 7.85 22.31 0.18 -4.93 16 26 H 0.03 1.14 7.53 -2.39 -0.02 1.13 16 27 H 0.07 2.86 5.87 -2.38 -0.01 2.84 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 30 H 0.09 3.92 7.66 -2.39 -0.02 3.91 16 31 H 0.12 5.57 6.49 -2.39 -0.02 5.55 16 32 H 0.41 12.83 9.10 -74.05 -0.67 12.16 16 33 H 0.16 3.00 7.94 -2.91 -0.02 2.98 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.10 4.31 7.29 -2.91 -0.02 4.29 16 Total: -1.00 -69.06 312.19 5.78 -63.28 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.47 Total: 33.92 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 4.06 Total: 21.73 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.18 Total: -67.63 kcal Atomic # 8 Polarization: -85.13 SS G_CDS: -0.37 Total: -85.49 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.78 Total: -4.66 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -69.06 5.78 -63.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736202190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.721 kcal (2) G-P(sol) polarization free energy of solvation -69.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds