Wall clock time and date at job start Tue Mar 31 2020 07:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46922 * 2 1 4 4 C 1.50704 * 109.47071 * 120.00458 * 2 1 3 5 5 O 1.20820 * 120.00066 * 119.99876 * 4 2 1 6 6 O 1.34234 * 119.99783 * 299.99401 * 4 2 1 7 7 C 1.45200 * 116.99904 * 180.02562 * 6 4 2 8 8 C 1.50696 * 109.46939 * 180.02562 * 7 6 4 9 9 O 1.21293 * 120.00334 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99248 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99088 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00923 * 359.97438 * 11 10 8 13 13 C 1.38958 * 119.99582 * 180.02562 * 11 10 8 14 14 N 1.31414 * 120.00179 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99844 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47549 * 89.99853 * 15 13 11 17 17 H 1.48504 * 109.46738 * 209.99690 * 15 13 11 18 18 H 1.48500 * 109.47191 * 329.99644 * 15 13 11 19 19 C 1.50699 * 109.46577 * 240.00126 * 2 1 3 20 20 C 1.38265 * 119.99210 * 299.97716 * 19 2 1 21 21 C 1.38223 * 120.05406 * 179.97438 * 20 19 2 22 22 C 1.38223 * 120.02411 * 0.02562 * 21 20 19 23 23 C 1.38437 * 119.97448 * 359.74760 * 22 21 20 24 24 F 1.35099 * 120.02356 * 180.27548 * 23 22 21 25 25 C 1.38183 * 119.98467 * 120.00449 * 19 2 1 26 26 H 1.08997 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46603 * 299.99435 * 1 2 3 28 28 H 1.08994 * 109.47161 * 59.99473 * 1 2 3 29 29 H 1.09008 * 109.46767 * 300.00118 * 7 6 4 30 30 H 1.09003 * 109.46821 * 59.99846 * 7 6 4 31 31 H 0.96994 * 120.00714 * 0.02562 * 10 8 7 32 32 H 0.96996 * 120.00137 * 180.02562 * 14 13 11 33 33 H 1.08004 * 119.96758 * 359.97438 * 20 19 2 34 34 H 1.08000 * 119.98736 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.01045 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.01017 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7270 -1.6929 1.1195 6 8 1.7082 -0.2519 2.4496 7 6 2.2278 -0.9859 3.5896 8 6 1.7628 -0.3294 4.8639 9 8 1.0620 0.6595 4.8161 10 7 2.1249 -0.8418 6.0568 11 6 1.7014 -0.2449 7.2161 12 1 1.0781 0.6361 7.1736 13 6 2.0751 -0.7727 8.4460 14 7 2.8339 -1.8444 8.4979 15 14 1.4976 0.0401 10.0255 16 1 0.2025 -0.5544 10.4435 17 1 2.5085 -0.1761 11.0917 18 1 1.3227 1.4970 9.7973 19 6 2.0322 -0.7104 -1.2305 20 6 1.6984 -2.0343 -1.4489 21 6 2.1579 -2.6869 -2.5774 22 6 2.9523 -2.0168 -3.4887 23 6 3.2833 -0.6899 -3.2735 24 9 4.0550 -0.0323 -4.1664 25 6 2.8267 -0.0386 -2.1399 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8642 -2.0130 3.5568 30 1 3.3173 -0.9848 3.5564 31 1 2.6850 -1.6328 6.0951 32 1 3.0945 -2.2131 9.3564 33 1 1.0781 -2.5587 -0.7371 34 1 1.8962 -3.7209 -2.7471 35 1 3.3108 -2.5268 -4.3706 36 1 3.0873 0.9955 -1.9691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745371197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:20 Heat of formation + Delta-G solvation = -147.695605 kcal Electronic energy + Delta-G solvation = -22461.506982 eV Core-core repulsion = 18632.197008 eV Total energy + Delta-G solvation = -3829.309974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.10446 -40.76091 -39.22952 -38.10405 -36.14759 -34.49978 -34.01695 -31.40163 -30.98370 -29.79267 -28.34837 -25.29994 -24.52325 -23.03848 -22.64072 -20.31117 -19.60185 -18.10215 -17.73281 -17.48890 -16.67126 -16.46475 -16.18823 -16.11446 -15.80648 -15.41212 -14.71438 -14.56187 -14.16481 -14.00456 -13.80520 -13.43615 -13.14541 -13.00584 -12.45649 -12.37572 -12.24682 -12.04179 -11.85454 -11.63772 -11.60502 -11.15864 -11.14689 -10.45863 -10.43441 -10.36279 -10.27594 -9.62298 -9.27019 -8.89348 -8.54275 -8.10225 -6.51746 -3.93858 0.85635 0.95950 2.25479 2.64260 3.11917 3.22282 3.28050 3.38736 3.71709 3.92013 4.09651 4.22415 4.42810 4.64050 4.74950 4.83155 4.91987 4.94743 5.06352 5.12656 5.13462 5.41357 5.52995 5.56646 5.62513 5.67262 5.79745 5.82415 5.95423 6.03582 6.08123 6.21420 6.57151 6.64313 7.46087 7.80370 7.93968 8.46526 9.05270 9.37426 9.87174 10.65486 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.039406 B = 0.002576 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.380172 B =10867.965546 C =11034.973297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 H 0.120 0.880 4 C 0.461 3.539 5 O -0.505 6.505 6 O -0.322 6.322 7 C 0.060 3.940 8 C 0.438 3.562 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.303 4.303 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.934 3.066 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.045 4.045 20 C -0.094 4.094 21 C -0.091 4.091 22 C -0.152 4.152 23 C 0.094 3.906 24 F -0.141 7.141 25 C -0.142 4.142 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 -1.284 -21.171 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 H 0.138 0.862 4 C 0.303 3.697 5 O -0.393 6.393 6 O -0.236 6.236 7 C -0.017 4.017 8 C 0.223 3.777 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.432 4.432 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.046 4.046 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.170 4.170 23 C 0.075 3.925 24 F -0.120 7.120 25 C -0.160 4.160 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.355 -0.991 -21.051 21.117 hybrid contribution 0.535 -0.257 0.755 0.961 sum -0.820 -1.248 -20.295 20.350 Atomic orbital electron populations 1.21827 0.90493 1.03498 1.04223 1.19927 0.98886 1.00385 0.86949 0.86205 1.23459 0.77849 0.83082 0.85282 1.90676 1.35428 1.25809 1.87402 1.86540 1.68630 1.54599 1.13857 1.22765 0.99572 0.95621 0.83761 1.19312 0.86837 0.87657 0.83901 1.90561 1.41331 1.27505 1.86608 1.41710 1.45673 1.27662 1.03943 1.19728 1.29788 1.11508 0.82139 0.87600 1.25320 0.96524 0.96239 0.99682 1.69613 1.35487 1.21465 1.27207 0.85796 0.78266 0.79627 0.80259 1.20244 1.20803 1.19263 1.19168 0.96828 0.94290 0.94283 1.21051 0.99498 0.93705 0.96997 1.20987 0.96465 1.00083 0.93410 1.21165 1.01106 0.93151 1.01622 1.17585 0.94802 0.91177 0.88962 1.91499 1.72853 1.81011 1.66615 1.20986 0.99769 1.01278 0.94005 0.91742 0.89814 0.90780 0.89548 0.89560 0.77160 0.91607 0.85344 0.84824 0.84794 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.94 37.16 0.33 -1.01 16 2 C -0.04 -0.46 3.01 -92.92 -0.28 -0.74 16 3 H 0.12 1.11 7.87 -51.93 -0.41 0.71 16 4 C 0.46 6.92 7.12 36.01 0.26 7.17 16 5 O -0.51 -8.46 14.86 -18.75 -0.28 -8.74 16 6 O -0.32 -5.75 9.66 -45.91 -0.44 -6.19 16 7 C 0.06 1.13 5.94 36.00 0.21 1.34 16 8 C 0.44 10.41 7.86 -10.99 -0.09 10.32 16 9 O -0.58 -15.75 16.08 -14.11 -0.23 -15.98 16 10 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16 11 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 12 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 13 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 14 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16 15 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 C -0.05 -0.49 4.40 -104.63 -0.46 -0.95 16 20 C -0.09 -0.98 7.93 -39.58 -0.31 -1.29 16 21 C -0.09 -0.81 10.04 -39.59 -0.40 -1.21 16 22 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16 23 C 0.09 0.98 7.30 -39.42 -0.29 0.69 16 24 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 25 C -0.14 -1.45 9.65 -39.51 -0.38 -1.83 16 26 H 0.06 0.58 7.39 -51.93 -0.38 0.20 16 27 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.46 8.13 -51.92 -0.42 1.04 16 30 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 31 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 33 H 0.13 1.29 7.51 -52.48 -0.39 0.89 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.16 7.95 -52.49 -0.42 0.75 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -32.21 327.20 -6.35 -38.56 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.97 Total: 7.66 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.04 Total: 2.86 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.67 Total: -37.11 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.95 Total: -30.91 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.21 -6.35 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745371197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.133 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds