Wall clock time and date at job start Tue Mar 31 2020 07:37:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 109.46922 * 2 1
4 4 C 1.50704 * 109.47071 * 120.00458 * 2 1 3
5 5 O 1.20820 * 120.00066 * 119.99876 * 4 2 1
6 6 O 1.34234 * 119.99783 * 299.99401 * 4 2 1
7 7 C 1.45200 * 116.99904 * 180.02562 * 6 4 2
8 8 C 1.50696 * 109.46939 * 180.02562 * 7 6 4
9 9 O 1.21293 * 120.00334 * 0.02562 * 8 7 6
10 10 N 1.34781 * 119.99248 * 179.97438 * 8 7 6
11 11 C 1.37099 * 119.99088 * 180.02562 * 10 8 7
12 12 H 1.08001 * 120.00923 * 359.97438 * 11 10 8
13 13 C 1.38958 * 119.99582 * 180.02562 * 11 10 8
14 14 N 1.31414 * 120.00179 * 359.97438 * 13 11 10
15 15 Si 1.86797 * 119.99844 * 180.02562 * 13 11 10
16 16 H 1.48498 * 109.47549 * 89.99853 * 15 13 11
17 17 H 1.48504 * 109.46738 * 209.99690 * 15 13 11
18 18 H 1.48500 * 109.47191 * 329.99644 * 15 13 11
19 19 C 1.50699 * 109.46577 * 240.00126 * 2 1 3
20 20 C 1.38265 * 119.99210 * 299.97716 * 19 2 1
21 21 C 1.38223 * 120.05406 * 179.97438 * 20 19 2
22 22 C 1.38223 * 120.02411 * 0.02562 * 21 20 19
23 23 C 1.38437 * 119.97448 * 359.74760 * 22 21 20
24 24 F 1.35099 * 120.02356 * 180.27548 * 23 22 21
25 25 C 1.38183 * 119.98467 * 120.00449 * 19 2 1
26 26 H 1.08997 * 109.47176 * 180.02562 * 1 2 3
27 27 H 1.09007 * 109.46603 * 299.99435 * 1 2 3
28 28 H 1.08994 * 109.47161 * 59.99473 * 1 2 3
29 29 H 1.09008 * 109.46767 * 300.00118 * 7 6 4
30 30 H 1.09003 * 109.46821 * 59.99846 * 7 6 4
31 31 H 0.96994 * 120.00714 * 0.02562 * 10 8 7
32 32 H 0.96996 * 120.00137 * 180.02562 * 14 13 11
33 33 H 1.08004 * 119.96758 * 359.97438 * 20 19 2
34 34 H 1.08000 * 119.98736 * 180.02562 * 21 20 19
35 35 H 1.08001 * 120.01045 * 180.02562 * 22 21 20
36 36 H 1.08002 * 120.01017 * 359.97438 * 25 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 1.2304
5 8 2.7270 -1.6929 1.1195
6 8 1.7082 -0.2519 2.4496
7 6 2.2278 -0.9859 3.5896
8 6 1.7628 -0.3294 4.8639
9 8 1.0620 0.6595 4.8161
10 7 2.1249 -0.8418 6.0568
11 6 1.7014 -0.2449 7.2161
12 1 1.0781 0.6361 7.1736
13 6 2.0751 -0.7727 8.4460
14 7 2.8339 -1.8444 8.4979
15 14 1.4976 0.0401 10.0255
16 1 0.2025 -0.5544 10.4435
17 1 2.5085 -0.1761 11.0917
18 1 1.3227 1.4970 9.7973
19 6 2.0322 -0.7104 -1.2305
20 6 1.6984 -2.0343 -1.4489
21 6 2.1579 -2.6869 -2.5774
22 6 2.9523 -2.0168 -3.4887
23 6 3.2833 -0.6899 -3.2735
24 9 4.0550 -0.0323 -4.1664
25 6 2.8267 -0.0386 -2.1399
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3633 0.5138 0.8901
28 1 -0.3633 0.5139 -0.8899
29 1 1.8642 -2.0130 3.5568
30 1 3.3173 -0.9848 3.5564
31 1 2.6850 -1.6328 6.0951
32 1 3.0945 -2.2131 9.3564
33 1 1.0781 -2.5587 -0.7371
34 1 1.8962 -3.7209 -2.7471
35 1 3.3108 -2.5268 -4.3706
36 1 3.0873 0.9955 -1.9691
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000745371197.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 07:37:20
Heat of formation + Delta-G solvation = -147.695605 kcal
Electronic energy + Delta-G solvation = -22461.506982 eV
Core-core repulsion = 18632.197008 eV
Total energy + Delta-G solvation = -3829.309974 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 295.105 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-49.10446 -40.76091 -39.22952 -38.10405 -36.14759 -34.49978 -34.01695 -31.40163
-30.98370 -29.79267 -28.34837 -25.29994 -24.52325 -23.03848 -22.64072 -20.31117
-19.60185 -18.10215 -17.73281 -17.48890 -16.67126 -16.46475 -16.18823 -16.11446
-15.80648 -15.41212 -14.71438 -14.56187 -14.16481 -14.00456 -13.80520 -13.43615
-13.14541 -13.00584 -12.45649 -12.37572 -12.24682 -12.04179 -11.85454 -11.63772
-11.60502 -11.15864 -11.14689 -10.45863 -10.43441 -10.36279 -10.27594 -9.62298
-9.27019 -8.89348 -8.54275 -8.10225 -6.51746 -3.93858 0.85635 0.95950
2.25479 2.64260 3.11917 3.22282 3.28050 3.38736 3.71709 3.92013
4.09651 4.22415 4.42810 4.64050 4.74950 4.83155 4.91987 4.94743
5.06352 5.12656 5.13462 5.41357 5.52995 5.56646 5.62513 5.67262
5.79745 5.82415 5.95423 6.03582 6.08123 6.21420 6.57151 6.64313
7.46087 7.80370 7.93968 8.46526 9.05270 9.37426 9.87174 10.65486
Molecular weight = 295.11amu
Principal moments of inertia in cm(-1)
A = 0.039406 B = 0.002576 C = 0.002537
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 710.380172 B =10867.965546 C =11034.973297
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.042 4.042
3 H 0.120 0.880
4 C 0.461 3.539
5 O -0.505 6.505
6 O -0.322 6.322
7 C 0.060 3.940
8 C 0.438 3.562
9 O -0.576 6.576
10 N -0.553 5.553
11 C -0.303 4.303
12 H 0.106 0.894
13 C 0.025 3.975
14 N -0.897 5.897
15 Si 0.934 3.066
16 H -0.277 1.277
17 H -0.283 1.283
18 H -0.268 1.268
19 C -0.045 4.045
20 C -0.094 4.094
21 C -0.091 4.091
22 C -0.152 4.152
23 C 0.094 3.906
24 F -0.141 7.141
25 C -0.142 4.142
26 H 0.064 0.936
27 H 0.083 0.917
28 H 0.073 0.927
29 H 0.086 0.914
30 H 0.086 0.914
31 H 0.395 0.605
32 H 0.274 0.726
33 H 0.129 0.871
34 H 0.134 0.866
35 H 0.134 0.866
36 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.201 -1.284 -21.171 21.243
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.061 4.061
3 H 0.138 0.862
4 C 0.303 3.697
5 O -0.393 6.393
6 O -0.236 6.236
7 C -0.017 4.017
8 C 0.223 3.777
9 O -0.460 6.460
10 N -0.190 5.190
11 C -0.432 4.432
12 H 0.124 0.876
13 C -0.178 4.178
14 N -0.538 5.538
15 Si 0.761 3.239
16 H -0.202 1.202
17 H -0.208 1.208
18 H -0.193 1.193
19 C -0.046 4.046
20 C -0.113 4.113
21 C -0.109 4.109
22 C -0.170 4.170
23 C 0.075 3.925
24 F -0.120 7.120
25 C -0.160 4.160
26 H 0.083 0.917
27 H 0.102 0.898
28 H 0.092 0.908
29 H 0.105 0.895
30 H 0.104 0.896
31 H 0.228 0.772
32 H 0.084 0.916
33 H 0.147 0.853
34 H 0.152 0.848
35 H 0.152 0.848
36 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -1.355 -0.991 -21.051 21.117
hybrid contribution 0.535 -0.257 0.755 0.961
sum -0.820 -1.248 -20.295 20.350
Atomic orbital electron populations
1.21827 0.90493 1.03498 1.04223 1.19927 0.98886 1.00385 0.86949
0.86205 1.23459 0.77849 0.83082 0.85282 1.90676 1.35428 1.25809
1.87402 1.86540 1.68630 1.54599 1.13857 1.22765 0.99572 0.95621
0.83761 1.19312 0.86837 0.87657 0.83901 1.90561 1.41331 1.27505
1.86608 1.41710 1.45673 1.27662 1.03943 1.19728 1.29788 1.11508
0.82139 0.87600 1.25320 0.96524 0.96239 0.99682 1.69613 1.35487
1.21465 1.27207 0.85796 0.78266 0.79627 0.80259 1.20244 1.20803
1.19263 1.19168 0.96828 0.94290 0.94283 1.21051 0.99498 0.93705
0.96997 1.20987 0.96465 1.00083 0.93410 1.21165 1.01106 0.93151
1.01622 1.17585 0.94802 0.91177 0.88962 1.91499 1.72853 1.81011
1.66615 1.20986 0.99769 1.01278 0.94005 0.91742 0.89814 0.90780
0.89548 0.89560 0.77160 0.91607 0.85344 0.84824 0.84794 0.84491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.34 8.94 37.16 0.33 -1.01 16
2 C -0.04 -0.46 3.01 -92.92 -0.28 -0.74 16
3 H 0.12 1.11 7.87 -51.93 -0.41 0.71 16
4 C 0.46 6.92 7.12 36.01 0.26 7.17 16
5 O -0.51 -8.46 14.86 -18.75 -0.28 -8.74 16
6 O -0.32 -5.75 9.66 -45.91 -0.44 -6.19 16
7 C 0.06 1.13 5.94 36.00 0.21 1.34 16
8 C 0.44 10.41 7.86 -10.99 -0.09 10.32 16
9 O -0.58 -15.75 16.08 -14.11 -0.23 -15.98 16
10 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16
11 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16
12 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16
13 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16
14 N -0.90 -23.94 13.05 55.50 0.72 -23.21 16
15 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16
16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16
19 C -0.05 -0.49 4.40 -104.63 -0.46 -0.95 16
20 C -0.09 -0.98 7.93 -39.58 -0.31 -1.29 16
21 C -0.09 -0.81 10.04 -39.59 -0.40 -1.21 16
22 C -0.15 -1.38 10.03 -39.51 -0.40 -1.78 16
23 C 0.09 0.98 7.30 -39.42 -0.29 0.69 16
24 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16
25 C -0.14 -1.45 9.65 -39.51 -0.38 -1.83 16
26 H 0.06 0.58 7.39 -51.93 -0.38 0.20 16
27 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16
28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.09 1.46 8.13 -51.92 -0.42 1.04 16
30 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16
31 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16
32 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16
33 H 0.13 1.29 7.51 -52.48 -0.39 0.89 16
34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16
35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16
36 H 0.14 1.16 7.95 -52.49 -0.42 0.75 16
LS Contribution 327.20 15.07 4.93 4.93
Total: -1.00 -32.21 327.20 -6.35 -38.56
By element:
Atomic # 1 Polarization: 11.63 SS G_CDS: -3.97 Total: 7.66 kcal
Atomic # 6 Polarization: 4.90 SS G_CDS: -2.04 Total: 2.86 kcal
Atomic # 7 Polarization: -37.78 SS G_CDS: 0.67 Total: -37.11 kcal
Atomic # 8 Polarization: -29.96 SS G_CDS: -0.95 Total: -30.91 kcal
Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal
Total LS contribution 4.93 Total: 4.93 kcal
Total: -32.21 -6.35 -38.56 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000745371197.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -109.133 kcal
(2) G-P(sol) polarization free energy of solvation -32.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.348 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.696 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds