Wall clock time and date at job start Tue Mar 31 2020 07:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47548 * 2 1 4 4 C 1.50703 * 109.47164 * 239.99810 * 2 1 3 5 5 O 1.20820 * 120.00309 * 240.00322 * 4 2 1 6 6 O 1.34230 * 119.99626 * 60.00649 * 4 2 1 7 7 C 1.45206 * 116.99987 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47034 * 179.97438 * 7 6 4 9 9 O 1.21288 * 120.00123 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99551 * 179.97438 * 8 7 6 11 11 C 1.37106 * 119.99892 * 179.97438 * 10 8 7 12 12 H 1.08005 * 119.99725 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00039 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00169 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47118 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47494 * 119.99834 * 15 13 11 18 18 H 1.48495 * 109.47391 * 239.99961 * 15 13 11 19 19 C 1.50699 * 109.47010 * 120.00523 * 2 1 3 20 20 C 1.38264 * 119.99175 * 60.01817 * 19 2 1 21 21 C 1.38224 * 120.05371 * 180.02562 * 20 19 2 22 22 C 1.38215 * 120.02235 * 359.97438 * 21 20 19 23 23 C 1.38437 * 119.97975 * 359.70450 * 22 21 20 24 24 F 1.35099 * 120.02745 * 180.31857 * 23 22 21 25 25 C 1.38183 * 119.98467 * 240.00244 * 19 2 1 26 26 H 1.09000 * 109.47156 * 299.99996 * 1 2 3 27 27 H 1.09007 * 109.46901 * 59.99999 * 1 2 3 28 28 H 1.08997 * 109.47359 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46540 * 299.99710 * 7 6 4 30 30 H 1.08996 * 109.47231 * 59.99391 * 7 6 4 31 31 H 0.96997 * 120.00500 * 359.97438 * 10 8 7 32 32 H 0.97004 * 120.00511 * 179.97438 * 14 13 11 33 33 H 1.08004 * 119.96758 * 359.97438 * 20 19 2 34 34 H 1.08000 * 119.98735 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.00869 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.01017 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7269 -1.6928 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.2268 -0.9863 -3.5897 8 6 1.7620 -0.3297 -4.8640 9 8 1.0621 0.6597 -4.8160 10 7 2.1241 -0.8418 -6.0568 11 6 1.7008 -0.2448 -7.2162 12 1 1.0775 0.6362 -7.1735 13 6 2.0745 -0.7725 -8.4460 14 7 2.8341 -1.8435 -8.4980 15 14 1.4984 0.0414 -10.0256 16 1 0.6610 1.2229 -9.6968 17 1 2.6774 0.4747 -10.8179 18 1 0.6983 -0.9266 -10.8180 19 6 2.0323 -0.7105 1.2304 20 6 1.6985 -2.0344 1.4487 21 6 2.1581 -2.6872 2.5771 22 6 2.9525 -2.0171 3.4883 23 6 3.2929 -0.6936 3.2675 24 9 4.0746 -0.0396 4.1543 25 6 2.8267 -0.0387 2.1399 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.3164 -0.9860 -3.5569 30 1 1.8626 -2.0131 -3.5566 31 1 2.6842 -1.6329 -6.0952 32 1 3.0947 -2.2122 -9.3565 33 1 1.0774 -2.5585 0.7373 34 1 1.8970 -3.7214 2.7463 35 1 3.3118 -2.5275 4.3697 36 1 3.0878 0.9952 1.9688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745371200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:23 Heat of formation + Delta-G solvation = -147.715885 kcal Electronic energy + Delta-G solvation = -22462.418447 eV Core-core repulsion = 18633.107594 eV Total energy + Delta-G solvation = -3829.310853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.10456 -40.76179 -39.23013 -38.10641 -36.14822 -34.50047 -34.01890 -31.40284 -30.98407 -29.79275 -28.34938 -25.30040 -24.52494 -23.03874 -22.64160 -20.31161 -19.60329 -18.10229 -17.73341 -17.48927 -16.67203 -16.46336 -16.18865 -16.11732 -15.80664 -15.41233 -14.71414 -14.56504 -14.16448 -14.00148 -13.80510 -13.43651 -13.14721 -13.00793 -12.45764 -12.37610 -12.24662 -12.04224 -11.85470 -11.64136 -11.60643 -11.16689 -11.15866 -10.43892 -10.40569 -10.36647 -10.27932 -9.63536 -9.27031 -8.89324 -8.54374 -8.10338 -6.51875 -3.93989 0.85616 0.95941 2.25431 2.64167 3.10357 3.22643 3.29696 3.38835 3.71590 3.91962 4.09593 4.22388 4.42785 4.64006 4.74928 4.83173 4.91953 4.94710 5.06267 5.12665 5.13442 5.41326 5.52975 5.56603 5.62499 5.67186 5.79734 5.82409 5.95400 6.03511 6.08115 6.21407 6.57098 6.64290 7.46199 7.80354 7.94101 8.46378 9.05315 9.37405 9.87060 10.65413 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.039314 B = 0.002577 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.046944 B =10863.900208 C =11029.737754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 H 0.120 0.880 4 C 0.461 3.539 5 O -0.505 6.505 6 O -0.322 6.322 7 C 0.060 3.940 8 C 0.438 3.562 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.302 4.302 12 H 0.107 0.893 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.045 4.045 20 C -0.094 4.094 21 C -0.091 4.091 22 C -0.152 4.152 23 C 0.094 3.906 24 F -0.141 7.141 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.395 0.605 32 H 0.273 0.727 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 -1.280 21.190 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 H 0.138 0.862 4 C 0.303 3.697 5 O -0.393 6.393 6 O -0.236 6.236 7 C -0.017 4.017 8 C 0.223 3.777 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.431 4.431 12 H 0.125 0.875 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.760 3.240 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.046 4.046 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.171 4.171 23 C 0.075 3.925 24 F -0.120 7.120 25 C -0.161 4.161 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.228 0.772 32 H 0.083 0.917 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.379 -0.985 21.072 21.140 hybrid contribution 0.552 -0.261 -0.760 0.975 sum -0.827 -1.246 20.312 20.367 Atomic orbital electron populations 1.21827 0.90495 1.03498 1.04224 1.19924 0.98887 1.00385 0.86950 0.86205 1.23456 0.77848 0.83081 0.85282 1.90676 1.35427 1.25810 1.87403 1.86540 1.68667 1.54563 1.13857 1.22766 0.99587 0.95612 0.83760 1.19311 0.86819 0.87652 0.83902 1.90560 1.41359 1.27458 1.86607 1.41719 1.45685 1.27670 1.03953 1.19776 1.29728 1.11466 0.82122 0.87549 1.25316 0.96551 0.96234 0.99686 1.69619 1.35524 1.21516 1.27100 0.85744 0.78492 0.79161 0.80625 1.19072 1.20607 1.20612 1.19168 0.96872 0.94277 0.94245 1.21051 0.99489 0.93712 0.97007 1.20985 0.96511 1.00059 0.93380 1.21163 1.01068 0.93234 1.01592 1.17585 0.94518 0.91255 0.89151 1.91499 1.72268 1.81187 1.67021 1.20985 0.99711 1.01230 0.94127 0.90779 0.89815 0.91743 0.89558 0.89546 0.77166 0.91660 0.85346 0.84824 0.84796 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.94 37.16 0.33 -1.01 16 2 C -0.04 -0.46 3.01 -92.92 -0.28 -0.74 16 3 H 0.12 1.11 7.87 -51.93 -0.41 0.71 16 4 C 0.46 6.92 7.12 36.01 0.26 7.17 16 5 O -0.51 -8.46 14.86 -18.75 -0.28 -8.74 16 6 O -0.32 -5.75 9.66 -45.90 -0.44 -6.19 16 7 C 0.06 1.12 5.94 36.01 0.21 1.34 16 8 C 0.44 10.41 7.86 -10.99 -0.09 10.33 16 9 O -0.58 -15.74 16.08 -14.11 -0.23 -15.97 16 10 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16 11 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 12 H 0.11 3.04 7.16 -52.48 -0.38 2.67 16 13 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 14 N -0.90 -23.92 13.05 55.50 0.72 -23.20 16 15 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 C -0.05 -0.49 4.40 -104.63 -0.46 -0.95 16 20 C -0.09 -0.98 7.93 -39.58 -0.31 -1.29 16 21 C -0.09 -0.81 10.04 -39.60 -0.40 -1.21 16 22 C -0.15 -1.38 10.03 -39.52 -0.40 -1.78 16 23 C 0.09 0.98 7.30 -39.42 -0.29 0.69 16 24 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 25 C -0.14 -1.45 9.65 -39.51 -0.38 -1.83 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 28 H 0.06 0.58 7.39 -51.93 -0.38 0.20 16 29 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 30 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 31 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.13 1.29 7.51 -52.48 -0.39 0.89 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.16 7.95 -52.49 -0.42 0.75 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -32.23 327.20 -6.35 -38.58 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.97 Total: 7.62 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.04 Total: 2.87 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.67 Total: -37.10 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.95 Total: -30.90 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.23 -6.35 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745371200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.138 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds