Wall clock time and date at job start Tue Mar 31 2020 07:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47548 * 2 1 4 4 C 1.50703 * 109.47164 * 239.99810 * 2 1 3 5 5 O 1.20820 * 120.00309 * 240.00322 * 4 2 1 6 6 O 1.34230 * 119.99626 * 60.00649 * 4 2 1 7 7 C 1.45206 * 116.99987 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47034 * 179.97438 * 7 6 4 9 9 O 1.21288 * 120.00123 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99551 * 179.97438 * 8 7 6 11 11 C 1.37106 * 119.99892 * 179.97438 * 10 8 7 12 12 H 1.08005 * 119.99725 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00039 * 179.97438 * 11 10 8 14 14 N 1.31406 * 120.00169 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47118 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47494 * 119.99834 * 15 13 11 18 18 H 1.48495 * 109.47391 * 239.99961 * 15 13 11 19 19 C 1.50699 * 109.47010 * 120.00523 * 2 1 3 20 20 C 1.38264 * 119.99175 * 60.01817 * 19 2 1 21 21 C 1.38224 * 120.05371 * 180.02562 * 20 19 2 22 22 C 1.38215 * 120.02235 * 359.97438 * 21 20 19 23 23 C 1.38437 * 119.97975 * 359.70450 * 22 21 20 24 24 F 1.35099 * 120.02745 * 180.31857 * 23 22 21 25 25 C 1.38183 * 119.98467 * 240.00244 * 19 2 1 26 26 H 1.09000 * 109.47156 * 299.99996 * 1 2 3 27 27 H 1.09007 * 109.46901 * 59.99999 * 1 2 3 28 28 H 1.08997 * 109.47359 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46540 * 299.99710 * 7 6 4 30 30 H 1.08996 * 109.47231 * 59.99391 * 7 6 4 31 31 H 0.96997 * 120.00500 * 359.97438 * 10 8 7 32 32 H 0.97004 * 120.00511 * 179.97438 * 14 13 11 33 33 H 1.08004 * 119.96758 * 359.97438 * 20 19 2 34 34 H 1.08000 * 119.98735 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.00869 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.01017 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7269 -1.6928 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.2268 -0.9863 -3.5897 8 6 1.7620 -0.3297 -4.8640 9 8 1.0621 0.6597 -4.8160 10 7 2.1241 -0.8418 -6.0568 11 6 1.7008 -0.2448 -7.2162 12 1 1.0775 0.6362 -7.1735 13 6 2.0745 -0.7725 -8.4460 14 7 2.8341 -1.8435 -8.4980 15 14 1.4984 0.0414 -10.0256 16 1 0.6610 1.2229 -9.6968 17 1 2.6774 0.4747 -10.8179 18 1 0.6983 -0.9266 -10.8180 19 6 2.0323 -0.7105 1.2304 20 6 1.6985 -2.0344 1.4487 21 6 2.1581 -2.6872 2.5771 22 6 2.9525 -2.0171 3.4883 23 6 3.2929 -0.6936 3.2675 24 9 4.0746 -0.0396 4.1543 25 6 2.8267 -0.0387 2.1399 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.3164 -0.9860 -3.5569 30 1 1.8626 -2.0131 -3.5566 31 1 2.6842 -1.6329 -6.0952 32 1 3.0947 -2.2122 -9.3565 33 1 1.0774 -2.5585 0.7373 34 1 1.8970 -3.7214 2.7463 35 1 3.3118 -2.5275 4.3697 36 1 3.0878 0.9952 1.9688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745371200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:22 Heat of formation + Delta-G solvation = -166.132982 kcal Electronic energy + Delta-G solvation = -22463.217072 eV Core-core repulsion = 18633.107594 eV Total energy + Delta-G solvation = -3830.109478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.90082 -41.93753 -40.35021 -39.74698 -37.50699 -36.03602 -35.35971 -33.41951 -31.72222 -30.69015 -29.83085 -26.78018 -25.85017 -23.77051 -23.64923 -21.47405 -21.32300 -20.07984 -18.86929 -18.46519 -17.86668 -17.67702 -17.31859 -17.16889 -16.91796 -16.60173 -16.32908 -15.82993 -15.78228 -15.30987 -14.75454 -14.58600 -14.31612 -14.00786 -13.76035 -13.62496 -13.56988 -13.14237 -13.00994 -12.94604 -12.72104 -12.47010 -12.44486 -12.10950 -11.91848 -11.84231 -11.58641 -11.47389 -10.51647 -10.12260 -10.00093 -9.66091 -8.52959 -6.03546 0.09133 0.21733 1.07185 1.34508 1.37179 1.45896 1.59221 1.86482 2.29095 2.60451 3.03992 3.12704 3.14875 3.42473 3.64872 3.81925 4.01937 4.05086 4.11411 4.14968 4.18190 4.20247 4.21628 4.42427 4.74190 4.82100 4.89269 5.06189 5.11021 5.20221 5.32887 5.34599 5.37232 5.46739 5.88743 5.89987 6.44849 6.62015 7.02637 7.39498 7.92762 8.64328 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.039314 B = 0.002577 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.046944 B =10863.900208 C =11029.737754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.036 4.036 3 H 0.137 0.863 4 C 0.462 3.538 5 O -0.523 6.523 6 O -0.339 6.339 7 C 0.071 3.929 8 C 0.437 3.563 9 O -0.616 6.616 10 N -0.559 5.559 11 C -0.336 4.336 12 H 0.085 0.915 13 C -0.009 4.009 14 N -0.916 5.916 15 Si 0.998 3.002 16 H -0.271 1.271 17 H -0.270 1.270 18 H -0.269 1.269 19 C -0.057 4.057 20 C -0.106 4.106 21 C -0.091 4.091 22 C -0.150 4.150 23 C 0.077 3.923 24 F -0.147 7.147 25 C -0.147 4.147 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.400 0.600 32 H 0.281 0.719 33 H 0.128 0.872 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -1.786 21.930 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.155 0.845 4 C 0.306 3.694 5 O -0.412 6.412 6 O -0.254 6.254 7 C -0.006 4.006 8 C 0.224 3.776 9 O -0.503 6.503 10 N -0.196 5.196 11 C -0.465 4.465 12 H 0.103 0.897 13 C -0.210 4.210 14 N -0.556 5.556 15 Si 0.821 3.179 16 H -0.195 1.195 17 H -0.195 1.195 18 H -0.194 1.194 19 C -0.057 4.057 20 C -0.125 4.125 21 C -0.108 4.108 22 C -0.168 4.168 23 C 0.058 3.942 24 F -0.126 7.126 25 C -0.165 4.165 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.234 0.766 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.341 -1.517 21.830 21.924 hybrid contribution 0.566 -0.145 -0.905 1.077 sum -0.776 -1.661 20.926 21.006 Atomic orbital electron populations 1.21830 0.89275 1.03838 1.04709 1.20046 0.99795 1.00728 0.84931 0.84490 1.24255 0.77177 0.82947 0.85057 1.90661 1.36338 1.26762 1.87407 1.86552 1.69202 1.55045 1.14606 1.22510 1.00387 0.95713 0.82010 1.20101 0.85489 0.86920 0.85089 1.90526 1.43002 1.29301 1.87477 1.41760 1.45909 1.27849 1.04122 1.19755 1.31158 1.11907 0.83725 0.89738 1.26125 0.96115 0.96553 1.02207 1.69675 1.35583 1.22046 1.28311 0.84803 0.78287 0.78173 0.76668 1.19504 1.19509 1.19441 1.19167 0.97675 0.94640 0.94234 1.21227 0.99765 0.93812 0.97655 1.21281 0.95785 1.01177 0.92586 1.21457 1.00373 0.92787 1.02202 1.17815 0.95051 0.91968 0.89384 1.91482 1.72518 1.81405 1.67216 1.21137 0.99394 1.01966 0.94015 0.88371 0.91164 0.91537 0.87840 0.87552 0.76601 0.90975 0.85410 0.82307 0.82714 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.94 71.98 0.64 -1.78 16 2 C -0.04 -0.75 3.01 -12.29 -0.04 -0.78 16 3 H 0.14 2.33 7.87 -2.39 -0.02 2.31 16 4 C 0.46 13.44 7.12 71.24 0.51 13.94 16 5 O -0.52 -16.97 14.86 21.98 0.33 -16.64 16 6 O -0.34 -11.96 9.66 -45.07 -0.44 -12.40 16 7 C 0.07 2.62 5.94 71.24 0.42 3.04 16 8 C 0.44 21.06 7.86 87.66 0.69 21.75 16 9 O -0.62 -34.53 16.08 15.74 0.25 -34.28 16 10 N -0.56 -28.42 5.29 -306.99 -1.62 -30.04 16 11 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 12 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 13 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 14 N -0.92 -48.39 13.05 21.66 0.28 -48.10 16 15 Si 1.00 41.73 29.55 68.60 2.03 43.75 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 19 C -0.06 -1.14 4.40 -19.87 -0.09 -1.22 16 20 C -0.11 -2.04 7.93 22.27 0.18 -1.86 16 21 C -0.09 -1.41 10.04 22.26 0.22 -1.19 16 22 C -0.15 -2.41 10.03 22.31 0.22 -2.19 16 23 C 0.08 1.49 7.30 22.38 0.16 1.65 16 24 F -0.15 -3.07 17.27 44.97 0.78 -2.30 16 25 C -0.15 -2.78 9.65 22.31 0.22 -2.56 16 26 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.43 8.11 -2.38 -0.02 1.41 16 28 H 0.07 1.12 7.39 -2.39 -0.02 1.10 16 29 H 0.10 3.46 8.13 -2.38 -0.02 3.44 16 30 H 0.11 3.49 8.13 -2.39 -0.02 3.48 16 31 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 32 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 33 H 0.13 2.40 7.51 -2.91 -0.02 2.38 16 34 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.15 2.32 7.95 -2.91 -0.02 2.29 16 Total: -1.00 -69.07 327.20 6.42 -62.65 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.39 Total: 26.51 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 4.42 Total: 10.86 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -1.34 Total: -78.15 kcal Atomic # 8 Polarization: -63.47 SS G_CDS: 0.14 Total: -63.32 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -69.07 6.42 -62.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745371200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.485 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds