Wall clock time and date at job start Tue Mar 31 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46838 * 2 1 4 4 C 1.52999 * 109.47225 * 119.99573 * 2 1 3 5 5 N 1.46502 * 109.47016 * 174.99850 * 4 2 1 6 6 C 1.46501 * 119.99354 * 95.57866 * 5 4 2 7 7 C 1.50693 * 109.47376 * 81.90883 * 6 5 4 8 8 H 1.07994 * 120.00504 * 359.97438 * 7 6 5 9 9 C 1.37886 * 120.00063 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99536 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99918 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47316 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46832 * 120.00686 * 11 9 7 14 14 H 1.48506 * 109.47221 * 240.00257 * 11 9 7 15 15 C 1.34766 * 120.00563 * 275.57401 * 5 4 2 16 16 O 1.21622 * 119.99943 * 6.61140 * 15 5 4 17 17 C 1.47373 * 120.00551 * 186.61564 * 15 5 4 18 18 C 1.36772 * 122.88994 * 16.63481 * 17 15 5 19 19 S 1.70551 * 110.75628 * 180.02562 * 18 17 15 20 20 C 1.75697 * 91.91649 * 0.02562 * 19 18 17 21 21 C 1.41447 * 125.13488 * 180.02562 * 20 19 18 22 22 O 1.21419 * 120.00149 * 179.97438 * 21 20 19 23 23 C 1.36395 * 109.73280 * 359.73450 * 20 19 18 24 24 H 1.08999 * 109.47125 * 300.00091 * 1 2 3 25 25 H 1.08998 * 109.46831 * 60.00294 * 1 2 3 26 26 H 1.09004 * 109.46665 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47529 * 240.00236 * 2 1 3 28 28 H 1.09003 * 109.47143 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47467 * 299.99915 * 3 2 1 30 30 H 1.08999 * 109.47337 * 60.00039 * 3 2 1 31 31 H 1.08999 * 109.46854 * 55.00577 * 4 2 1 32 32 H 1.08997 * 109.47163 * 295.00431 * 4 2 1 33 33 H 1.09004 * 109.47342 * 321.90408 * 6 5 4 34 34 H 1.09005 * 109.46803 * 201.91278 * 6 5 4 35 35 H 0.97002 * 119.99325 * 179.97438 * 10 9 7 36 36 H 1.07996 * 124.62057 * 0.04488 * 18 17 15 37 37 H 1.08000 * 119.99762 * 359.97140 * 21 20 19 38 38 H 1.08002 * 123.31431 * 180.24787 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.8263 1.1905 6 6 4.3339 0.1705 1.8669 7 6 4.4459 -0.1769 3.3290 8 1 3.9457 -1.0523 3.7159 9 6 5.1871 0.6229 4.1728 10 7 5.7958 1.6893 3.7017 11 14 5.3254 0.1927 5.9853 12 1 4.5534 -1.0456 6.2604 13 1 6.7520 -0.0260 6.3347 14 1 4.7811 1.3075 6.8017 15 6 4.0762 -1.8399 0.5145 16 8 3.3910 -2.5973 -0.1459 17 6 5.5362 -2.0306 0.5754 18 6 6.3220 -1.4486 1.5317 19 16 7.9585 -1.8755 1.3113 20 6 7.5746 -2.8552 -0.0958 21 6 8.5157 -3.5776 -0.8660 22 8 8.1464 -4.2271 -1.8230 23 6 6.2313 -2.8191 -0.3294 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6055 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1369 33 1 3.8801 1.1559 1.7613 34 1 5.3272 0.1781 1.4180 35 1 6.3170 2.2521 4.2955 36 1 5.9561 -0.8066 2.3192 37 1 9.5628 -3.5514 -0.6027 38 1 5.7560 -3.3498 -1.1412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754985173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:41 Heat of formation + Delta-G solvation = -46.011721 kcal Electronic energy + Delta-G solvation = -21884.471864 eV Core-core repulsion = 18625.784411 eV Total energy + Delta-G solvation = -3258.687454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41136 -40.17583 -38.04318 -37.50768 -35.85843 -34.26260 -31.52387 -29.66187 -28.04822 -27.55465 -26.71746 -25.20778 -23.88635 -21.51025 -20.56052 -20.09490 -18.76654 -18.59336 -17.79468 -17.11736 -16.66652 -16.39345 -16.18502 -15.94909 -15.53295 -15.40118 -14.87752 -14.74440 -14.30659 -14.25708 -13.73806 -13.68454 -13.52194 -13.08078 -13.02839 -12.80683 -12.66641 -12.35338 -12.24061 -12.09793 -12.04788 -11.80958 -11.60335 -11.53130 -11.02020 -10.81506 -10.63428 -9.81671 -9.69013 -9.38462 -8.27896 -6.44446 -0.72920 0.52791 0.56258 0.84705 1.40250 1.47121 1.55480 1.76904 2.24738 2.32866 2.45944 2.99186 3.47519 3.81692 3.99950 4.04216 4.16771 4.17644 4.30609 4.48108 4.60495 4.66129 4.76426 4.85269 4.87890 4.90046 4.99822 5.03218 5.11336 5.15752 5.24497 5.26798 5.40484 5.44394 5.62707 5.80832 5.95023 6.44373 6.50054 6.74365 7.19995 7.31679 8.74685 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.007387 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.105906 B = 3789.764193 C = 5969.309443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.139 4.139 4 C 0.126 3.874 5 N -0.586 5.586 6 C 0.225 3.775 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.038 3.962 10 N -0.900 5.900 11 Si 0.946 3.054 12 H -0.274 1.274 13 H -0.269 1.269 14 H -0.278 1.278 15 C 0.565 3.435 16 O -0.595 6.595 17 C -0.210 4.210 18 C -0.199 4.199 19 S 0.323 5.677 20 C -0.362 4.362 21 C 0.421 3.579 22 O -0.508 6.508 23 C -0.012 4.012 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.275 0.725 36 H 0.232 0.768 37 H 0.157 0.843 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -1.080 -1.747 3.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.003 3.997 5 N -0.314 5.314 6 C 0.105 3.895 7 C -0.590 4.590 8 H 0.074 0.926 9 C -0.166 4.166 10 N -0.536 5.536 11 Si 0.771 3.229 12 H -0.198 1.198 13 H -0.194 1.194 14 H -0.204 1.204 15 C 0.354 3.646 16 O -0.480 6.480 17 C -0.224 4.224 18 C -0.338 4.338 19 S 0.591 5.409 20 C -0.479 4.479 21 C 0.284 3.716 22 O -0.387 6.387 23 C -0.044 4.044 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.247 0.753 37 H 0.173 0.827 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.825 -1.255 -1.739 4.385 hybrid contribution -1.608 -0.254 0.334 1.662 sum 2.217 -1.509 -1.405 3.028 Atomic orbital electron populations 1.21697 0.92623 1.02052 1.02811 1.21423 0.97464 0.96422 0.97334 1.21813 1.00335 0.95390 1.02048 1.21515 0.79065 1.00419 0.98694 1.48018 1.07490 1.26051 1.49844 1.19969 0.91236 0.87192 0.91142 1.21582 1.32349 1.11245 0.93857 0.92591 1.25559 0.94588 0.94205 1.02254 1.69996 1.31487 1.14675 1.37491 0.85676 0.78616 0.78335 0.80293 1.19838 1.19360 1.20403 1.18020 0.87277 0.80475 0.78835 1.90654 1.65326 1.47711 1.44280 1.19094 0.94792 1.07296 1.01238 1.28873 1.00015 1.01073 1.03832 1.82397 1.02726 1.36844 1.18935 1.24738 0.98915 1.15209 1.09085 1.22402 0.94833 0.74408 0.80002 1.90570 1.84544 1.36347 1.27220 1.20731 0.92743 0.93953 0.97019 0.91555 0.91270 0.92691 0.93204 0.94406 0.91559 0.92303 0.92141 0.89825 0.94922 0.93321 0.91558 0.75282 0.82681 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.19 71.98 0.66 -2.71 16 2 C -0.11 -3.47 3.09 -10.79 -0.03 -3.50 16 3 C -0.14 -4.32 8.35 71.98 0.60 -3.72 16 4 C 0.13 4.70 4.74 86.38 0.41 5.11 16 5 N -0.59 -24.87 2.20 -830.10 -1.82 -26.69 16 6 C 0.23 10.02 3.90 85.63 0.33 10.35 16 7 C -0.55 -25.79 7.21 25.60 0.18 -25.60 16 8 H 0.06 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.04 1.74 5.14 84.66 0.44 2.18 16 10 N -0.90 -43.11 13.29 21.45 0.28 -42.83 16 11 Si 0.95 37.14 29.54 68.60 2.03 39.17 16 12 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 13 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 14 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 15 C 0.57 25.33 7.54 86.65 0.65 25.98 16 16 O -0.60 -28.96 16.33 -4.10 -0.07 -29.03 16 17 C -0.21 -8.49 5.57 -21.11 -0.12 -8.61 16 18 C -0.20 -7.51 8.47 67.48 0.57 -6.94 16 19 S 0.32 8.75 23.02 -56.49 -1.30 7.45 16 20 C -0.36 -10.69 6.22 22.63 0.14 -10.55 16 21 C 0.42 10.49 11.46 68.61 0.79 11.28 16 22 O -0.51 -16.94 17.51 -3.46 -0.06 -17.00 16 23 C -0.01 -0.43 9.49 21.95 0.21 -0.22 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.84 7.94 -2.39 -0.02 1.82 16 28 H 0.04 1.35 6.17 -2.39 -0.01 1.33 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 32 H 0.08 3.04 8.03 -2.39 -0.02 3.02 16 33 H 0.03 1.53 6.31 -2.39 -0.02 1.51 16 34 H 0.05 2.24 4.62 -2.38 -0.01 2.23 16 35 H 0.27 12.43 8.31 -92.71 -0.77 11.66 16 36 H 0.23 9.81 2.66 -2.91 -0.01 9.81 16 37 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.14 5.40 7.97 -2.91 -0.02 5.38 16 Total: -1.00 -58.98 329.87 4.97 -54.00 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.08 Total: 21.88 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.84 Total: -6.95 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -1.54 Total: -69.52 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.13 Total: -46.03 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: 8.75 SS G_CDS: -1.30 Total: 7.45 kcal Total: -58.98 4.97 -54.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754985173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.990 kcal (2) G-P(sol) polarization free energy of solvation -58.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds