Wall clock time and date at job start Tue Mar 31 2020 07:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99999 * 2 1 4 4 O 1.42893 * 109.47145 * 135.00202 * 3 2 1 5 5 C 1.42898 * 114.00228 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47424 * 179.97438 * 5 4 3 7 7 O 1.21299 * 120.00117 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.40081 * 120.00082 * 185.61293 * 8 6 5 10 10 C 1.38709 * 120.07990 * 34.06418 * 9 8 6 11 11 C 1.38189 * 120.01964 * 179.97438 * 10 9 8 12 12 C 1.38548 * 120.17976 * 0.03230 * 11 10 9 13 13 F 1.35098 * 119.92433 * 179.97438 * 12 11 10 14 14 C 1.38341 * 120.15132 * 359.97438 * 12 11 10 15 15 C 1.38741 * 119.98167 * 359.97438 * 14 12 11 16 16 O 1.35771 * 120.09067 * 180.29367 * 15 14 12 17 17 C 1.34813 * 116.99927 * 354.19117 * 16 15 14 18 18 H 1.07997 * 119.99919 * 354.51625 * 17 16 15 19 19 C 1.38632 * 120.00026 * 174.52021 * 17 16 15 20 20 N 1.31574 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00077 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47726 * 89.99836 * 21 19 17 23 23 H 1.48506 * 109.47089 * 209.99733 * 21 19 17 24 24 H 1.48502 * 109.47111 * 329.99482 * 21 19 17 25 25 H 1.08006 * 119.99712 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00386 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00055 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47084 * 14.99641 * 3 2 1 29 29 H 1.08998 * 109.46978 * 254.99678 * 3 2 1 30 30 H 1.09000 * 109.46835 * 59.99811 * 5 4 3 31 31 H 1.08996 * 109.47178 * 299.99969 * 5 4 3 32 32 H 0.97000 * 119.99438 * 5.60852 * 8 6 5 33 33 H 1.08000 * 119.98996 * 359.97438 * 10 9 8 34 34 H 1.07999 * 119.90633 * 180.02562 * 11 10 9 35 35 H 1.08009 * 120.00670 * 180.02562 * 14 12 11 36 36 H 0.96995 * 119.99921 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9084 2.4349 1.0320 6 6 4.9939 2.2568 2.0620 7 8 5.0892 1.2105 2.6682 8 7 5.8591 3.2602 2.3097 9 6 6.9381 3.0560 3.1793 10 6 7.5585 1.8168 3.2385 11 6 8.6232 1.6169 4.0964 12 6 9.0739 2.6516 4.9000 13 9 10.1149 2.4503 5.7372 14 6 8.4605 3.8904 4.8470 15 6 7.3917 4.0986 3.9872 16 8 6.7919 5.3152 3.9290 17 6 7.2024 6.2431 4.8167 18 1 7.9108 5.9770 5.5873 19 6 6.7152 7.5387 4.7405 20 7 5.8525 7.8630 3.8015 21 14 7.2835 8.8241 5.9709 22 1 8.4905 9.5120 5.4465 23 1 6.2008 9.8180 6.1842 24 1 7.6107 8.1644 7.2605 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4755 1.4868 -0.9926 30 1 3.2689 3.2695 1.3191 31 1 4.3587 2.6395 0.0607 32 1 5.7345 4.1237 1.8857 33 1 7.2093 1.0079 2.6138 34 1 9.1051 0.6514 4.1407 35 1 8.8141 4.6955 5.4741 36 1 5.5113 8.7694 3.7484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760801241.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:03 Heat of formation + Delta-G solvation = -100.134748 kcal Electronic energy + Delta-G solvation = -22694.822455 eV Core-core repulsion = 18867.574874 eV Total energy + Delta-G solvation = -3827.247580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.28048 -40.15335 -38.82151 -37.73670 -36.30577 -34.11741 -33.99028 -32.44713 -29.76094 -29.20120 -27.48365 -25.65194 -25.44234 -22.54511 -21.68440 -20.43868 -19.90722 -18.38655 -17.96834 -17.24327 -16.92084 -16.42804 -16.13126 -15.51074 -15.28844 -15.10539 -14.93408 -14.48034 -14.30063 -13.90540 -13.66860 -13.59351 -13.40154 -12.99422 -12.50380 -12.29230 -12.21495 -12.13365 -11.67259 -11.40492 -11.17567 -11.01126 -10.74876 -10.56035 -10.11696 -9.85567 -9.73785 -9.53487 -9.36335 -8.99482 -7.93232 -7.16196 -6.64284 -4.21807 1.74802 1.91157 2.08167 2.87605 3.03076 3.04784 3.06449 3.10643 3.82034 4.06133 4.29255 4.74626 4.82022 4.88299 4.91538 4.94543 5.07024 5.07911 5.14243 5.22531 5.31388 5.54564 5.62603 5.71551 5.98296 6.17186 6.33387 6.40054 6.47931 6.70433 6.87356 6.87829 6.92865 7.02006 7.16193 7.59538 7.78941 7.84788 8.48753 8.81926 9.42216 10.52840 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.004048 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.521376 B = 6914.854219 C = 8883.120310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.085 3.915 4 O -0.359 6.359 5 C 0.046 3.954 6 C 0.510 3.490 7 O -0.514 6.514 8 N -0.649 5.649 9 C 0.061 3.939 10 C -0.049 4.049 11 C -0.228 4.228 12 C 0.131 3.869 13 F -0.151 7.151 14 C -0.258 4.258 15 C 0.160 3.840 16 O -0.168 6.168 17 C -0.392 4.392 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.859 5.859 21 Si 0.943 3.057 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.266 1.266 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.416 0.584 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 -7.507 -7.699 11.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.034 4.034 6 C 0.296 3.704 7 O -0.389 6.389 8 N -0.295 5.295 9 C -0.033 4.033 10 C -0.069 4.069 11 C -0.248 4.248 12 C 0.111 3.889 13 F -0.129 7.129 14 C -0.279 4.279 15 C 0.103 3.897 16 O -0.071 6.071 17 C -0.468 4.468 18 H 0.112 0.888 19 C -0.162 4.162 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.190 1.190 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.136 0.864 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.252 0.748 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.895 -8.115 -7.382 12.013 hybrid contribution 0.378 1.367 0.458 1.490 sum -4.518 -6.748 -6.924 10.672 Atomic orbital electron populations 1.23831 0.95527 1.02269 1.00302 1.22728 0.95607 0.98233 0.99971 1.21617 0.88900 0.96172 0.92408 1.88025 1.44241 1.35055 1.60435 1.22165 0.93311 0.89274 0.98606 1.20206 0.82113 0.84307 0.83782 1.90712 1.71954 1.27288 1.48971 1.43006 1.25427 1.15570 1.45539 1.16789 0.93584 0.94015 0.98863 1.20474 0.93120 0.95347 0.97953 1.20452 1.02478 0.98844 1.03010 1.17450 0.86166 0.94357 0.90887 1.91415 1.55959 1.95715 1.69845 1.20874 1.01493 0.97617 1.07878 1.18808 0.91400 0.87316 0.92137 1.83927 1.54325 1.16371 1.52441 1.21350 1.28117 0.88872 1.08416 0.88811 1.25285 0.95987 0.96971 0.97930 1.70003 1.27608 1.20291 1.31432 0.85672 0.78529 0.79483 0.79625 1.19712 1.20134 1.19024 0.88389 0.87796 0.86442 0.92453 0.92078 0.89768 0.89953 0.74815 0.84684 0.85831 0.83884 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 14.31 29.02 0.42 -1.07 16 2 C -0.15 -1.44 9.89 -36.02 -0.36 -1.80 16 3 C 0.09 0.88 6.35 36.01 0.23 1.10 16 4 O -0.36 -5.13 9.86 -55.14 -0.54 -5.67 16 5 C 0.05 0.60 6.42 36.00 0.23 0.83 16 6 C 0.51 8.82 7.64 -10.98 -0.08 8.74 16 7 O -0.51 -10.73 14.26 -14.37 -0.20 -10.93 16 8 N -0.65 -11.67 5.20 -9.72 -0.05 -11.72 16 9 C 0.06 1.26 6.28 -83.45 -0.52 0.74 16 10 C -0.05 -0.93 8.65 -39.43 -0.34 -1.27 16 11 C -0.23 -4.22 10.02 -39.49 -0.40 -4.62 16 12 C 0.13 2.61 7.29 -39.43 -0.29 2.33 16 13 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 14 C -0.26 -5.59 9.11 -39.36 -0.36 -5.95 16 15 C 0.16 3.64 6.66 -38.93 -0.26 3.38 16 16 O -0.17 -4.32 9.30 0.03 0.00 -4.32 16 17 C -0.39 -10.22 9.44 30.88 0.29 -9.93 16 18 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -23.07 13.67 55.48 0.76 -22.32 16 21 Si 0.94 19.48 29.55 -169.99 -5.02 14.46 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H 0.10 0.70 7.90 -52.48 -0.41 0.29 16 26 H 0.10 0.70 8.06 -52.49 -0.42 0.28 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.06 0.52 7.86 -51.93 -0.41 0.11 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.42 6.89 8.55 -40.82 -0.35 6.54 16 33 H 0.14 2.50 6.48 -52.49 -0.34 2.16 16 34 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.14 3.09 5.71 -52.48 -0.30 2.79 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -30.90 326.69 -5.40 -36.29 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -3.76 Total: 8.63 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.54 Total: -6.50 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.71 Total: -34.04 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.75 Total: -20.93 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.90 -5.40 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760801241.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.841 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds