Wall clock time and date at job start Tue Mar 31 2020 07:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99999 * 2 1 4 4 O 1.42893 * 109.47145 * 135.00202 * 3 2 1 5 5 C 1.42898 * 114.00228 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47424 * 179.97438 * 5 4 3 7 7 O 1.21299 * 120.00117 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.40081 * 120.00082 * 185.61293 * 8 6 5 10 10 C 1.38709 * 120.07990 * 34.06418 * 9 8 6 11 11 C 1.38189 * 120.01964 * 179.97438 * 10 9 8 12 12 C 1.38548 * 120.17976 * 0.03230 * 11 10 9 13 13 F 1.35098 * 119.92433 * 179.97438 * 12 11 10 14 14 C 1.38341 * 120.15132 * 359.97438 * 12 11 10 15 15 C 1.38741 * 119.98167 * 359.97438 * 14 12 11 16 16 O 1.35771 * 120.09067 * 180.29367 * 15 14 12 17 17 C 1.34813 * 116.99927 * 354.19117 * 16 15 14 18 18 H 1.07997 * 119.99919 * 354.51625 * 17 16 15 19 19 C 1.38632 * 120.00026 * 174.52021 * 17 16 15 20 20 N 1.31574 * 120.00036 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00077 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47726 * 89.99836 * 21 19 17 23 23 H 1.48506 * 109.47089 * 209.99733 * 21 19 17 24 24 H 1.48502 * 109.47111 * 329.99482 * 21 19 17 25 25 H 1.08006 * 119.99712 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00386 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00055 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47084 * 14.99641 * 3 2 1 29 29 H 1.08998 * 109.46978 * 254.99678 * 3 2 1 30 30 H 1.09000 * 109.46835 * 59.99811 * 5 4 3 31 31 H 1.08996 * 109.47178 * 299.99969 * 5 4 3 32 32 H 0.97000 * 119.99438 * 5.60852 * 8 6 5 33 33 H 1.08000 * 119.98996 * 359.97438 * 10 9 8 34 34 H 1.07999 * 119.90633 * 180.02562 * 11 10 9 35 35 H 1.08009 * 120.00670 * 180.02562 * 14 12 11 36 36 H 0.96995 * 119.99921 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9084 2.4349 1.0320 6 6 4.9939 2.2568 2.0620 7 8 5.0892 1.2105 2.6682 8 7 5.8591 3.2602 2.3097 9 6 6.9381 3.0560 3.1793 10 6 7.5585 1.8168 3.2385 11 6 8.6232 1.6169 4.0964 12 6 9.0739 2.6516 4.9000 13 9 10.1149 2.4503 5.7372 14 6 8.4605 3.8904 4.8470 15 6 7.3917 4.0986 3.9872 16 8 6.7919 5.3152 3.9290 17 6 7.2024 6.2431 4.8167 18 1 7.9108 5.9770 5.5873 19 6 6.7152 7.5387 4.7405 20 7 5.8525 7.8630 3.8015 21 14 7.2835 8.8241 5.9709 22 1 8.4905 9.5120 5.4465 23 1 6.2008 9.8180 6.1842 24 1 7.6107 8.1644 7.2605 25 1 -0.5400 0.9354 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3855 2.1161 0.2659 29 1 2.4755 1.4868 -0.9926 30 1 3.2689 3.2695 1.3191 31 1 4.3587 2.6395 0.0607 32 1 5.7345 4.1237 1.8857 33 1 7.2093 1.0079 2.6138 34 1 9.1051 0.6514 4.1407 35 1 8.8141 4.6955 5.4741 36 1 5.5113 8.7694 3.7484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760801241.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:02 Heat of formation + Delta-G solvation = -119.295524 kcal Electronic energy + Delta-G solvation = -22695.653328 eV Core-core repulsion = 18867.574874 eV Total energy + Delta-G solvation = -3828.078454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.85357 -41.66896 -40.33537 -38.86096 -37.94019 -35.61649 -34.75713 -34.32067 -31.29186 -30.70698 -28.74053 -27.39462 -26.42260 -24.14941 -23.27881 -21.66543 -20.84563 -20.16899 -19.58500 -18.43310 -18.43167 -17.45429 -17.37278 -17.00939 -16.86360 -16.56920 -16.19881 -15.98330 -15.72331 -15.42297 -15.26223 -15.03476 -14.87091 -14.07747 -13.98840 -13.80951 -13.43142 -13.21756 -13.17939 -12.99779 -12.60660 -12.34932 -12.14988 -11.88325 -11.69441 -11.24604 -10.99270 -10.87635 -10.80363 -10.25071 -9.59754 -8.80769 -8.52294 -6.17994 0.13088 0.43223 1.19252 1.37771 1.44067 1.50145 1.52504 1.83658 2.13873 2.63172 3.03554 3.04490 3.14132 3.42418 3.61962 3.91786 4.07825 4.14335 4.16942 4.23215 4.26282 4.33310 4.46584 4.60268 4.62806 4.87897 4.98838 5.00658 5.19792 5.26614 5.31834 5.49269 5.67180 5.70814 5.91854 5.97319 6.08748 6.44942 6.92458 7.08725 7.59785 8.68221 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.004048 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.521376 B = 6914.854219 C = 8883.120310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.081 3.919 4 O -0.392 6.392 5 C 0.053 3.947 6 C 0.508 3.492 7 O -0.553 6.553 8 N -0.648 5.648 9 C 0.061 3.939 10 C -0.051 4.051 11 C -0.204 4.204 12 C 0.125 3.875 13 F -0.144 7.144 14 C -0.264 4.264 15 C 0.134 3.866 16 O -0.200 6.200 17 C -0.417 4.417 18 H 0.098 0.902 19 C -0.007 4.007 20 N -0.902 5.902 21 Si 1.011 2.989 22 H -0.263 1.263 23 H -0.270 1.270 24 H -0.260 1.260 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.421 0.579 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 -8.141 -8.113 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.006 3.994 4 O -0.311 6.311 5 C -0.026 4.026 6 C 0.297 3.703 7 O -0.431 6.431 8 N -0.295 5.295 9 C -0.034 4.034 10 C -0.071 4.071 11 C -0.224 4.224 12 C 0.105 3.895 13 F -0.122 7.122 14 C -0.285 4.285 15 C 0.080 3.920 16 O -0.105 6.105 17 C -0.492 4.492 18 H 0.115 0.885 19 C -0.207 4.207 20 N -0.539 5.539 21 Si 0.831 3.169 22 H -0.188 1.188 23 H -0.194 1.194 24 H -0.184 1.184 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.258 0.742 33 H 0.165 0.835 34 H 0.176 0.824 35 H 0.155 0.845 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.025 -8.777 -7.816 12.782 hybrid contribution 0.425 1.296 0.529 1.462 sum -4.600 -7.482 -7.287 11.412 Atomic orbital electron populations 1.24063 0.95034 1.03488 0.97876 1.22784 0.96301 0.97975 1.02265 1.21838 0.88268 0.96794 0.92536 1.87978 1.45439 1.35738 1.61969 1.22203 0.92315 0.89485 0.98601 1.21057 0.82299 0.83165 0.83808 1.90681 1.73051 1.28706 1.50619 1.43110 1.25121 1.16249 1.45020 1.17075 0.94020 0.93834 0.98422 1.20687 0.93131 0.94998 0.98268 1.20850 1.01127 0.99663 1.00736 1.17448 0.86484 0.94065 0.91490 1.91432 1.55543 1.95601 1.69659 1.20962 1.01540 0.98419 1.07587 1.19154 0.92300 0.87230 0.93303 1.83899 1.55922 1.17310 1.53381 1.21722 1.28707 0.89587 1.09217 0.88476 1.26352 0.95913 0.98633 0.99781 1.70102 1.29325 1.20971 1.33483 0.84686 0.78327 0.76661 0.77271 1.18797 1.19447 1.18390 0.87238 0.86506 0.87238 0.91222 0.90183 0.87898 0.86354 0.74155 0.83548 0.82401 0.84517 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 14.31 67.78 0.97 -1.44 16 2 C -0.18 -3.22 9.89 25.65 0.25 -2.97 16 3 C 0.08 1.52 6.35 71.24 0.45 1.97 16 4 O -0.39 -10.67 9.86 -129.95 -1.28 -11.96 16 5 C 0.05 1.27 6.42 71.23 0.46 1.73 16 6 C 0.51 17.21 7.64 87.66 0.67 17.88 16 7 O -0.55 -22.83 14.26 15.95 0.23 -22.61 16 8 N -0.65 -23.19 5.20 -303.03 -1.58 -24.77 16 9 C 0.06 2.51 6.28 38.23 0.24 2.75 16 10 C -0.05 -1.87 8.65 22.37 0.19 -1.68 16 11 C -0.20 -7.09 10.02 22.33 0.22 -6.87 16 12 C 0.12 4.82 7.29 22.37 0.16 4.98 16 13 F -0.14 -5.22 17.26 44.97 0.78 -4.45 16 14 C -0.26 -11.55 9.11 22.41 0.20 -11.34 16 15 C 0.13 6.23 6.66 22.69 0.15 6.38 16 16 O -0.20 -10.65 9.30 -22.80 -0.21 -10.87 16 17 C -0.42 -22.37 9.44 67.91 0.64 -21.73 16 18 H 0.10 4.93 5.30 -2.91 -0.02 4.91 16 19 C -0.01 -0.35 5.49 84.83 0.47 0.12 16 20 N -0.90 -49.66 13.67 21.61 0.30 -49.36 16 21 Si 1.01 40.17 29.55 68.60 2.03 42.20 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 H 0.11 1.31 7.90 -2.91 -0.02 1.28 16 26 H 0.12 1.34 8.06 -2.91 -0.02 1.32 16 27 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.07 1.10 7.86 -2.39 -0.02 1.08 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.42 14.04 8.55 -92.71 -0.79 13.25 16 33 H 0.15 5.16 6.48 -2.91 -0.02 5.14 16 34 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.14 6.05 5.71 -2.91 -0.02 6.03 16 36 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -67.95 326.69 5.68 -62.27 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.34 Total: 29.77 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.09 Total: -10.23 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -1.28 Total: -74.13 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.27 Total: -45.43 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -67.95 5.68 -62.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760801241.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.030 kcal (2) G-P(sol) polarization free energy of solvation -67.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds