Wall clock time and date at job start Tue Mar 31 2020 07:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21282 * 120.00187 * 2 1 4 4 N 1.34781 * 120.00143 * 180.02562 * 2 1 3 5 5 C 1.39517 * 119.99894 * 184.50922 * 4 2 1 6 6 C 1.39090 * 119.93320 * 325.23672 * 5 4 2 7 7 C 1.37670 * 120.11063 * 180.23278 * 6 5 4 8 8 C 1.39789 * 119.96205 * 359.52064 * 7 6 5 9 9 C 1.47469 * 120.07471 * 180.27485 * 8 7 6 10 10 O 1.21507 * 119.99509 * 0.02562 * 9 8 7 11 11 O 1.34744 * 120.00330 * 179.97438 * 9 8 7 12 12 C 1.45202 * 117.00014 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47026 * 329.99812 * 12 11 9 14 14 C 1.53004 * 109.47241 * 89.99743 * 12 11 9 15 15 C 1.50703 * 109.47080 * 209.99824 * 12 11 9 16 16 H 1.07996 * 119.99881 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99909 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99759 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99995 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46882 * 89.99892 * 19 17 15 21 21 H 1.48497 * 109.47273 * 210.00239 * 19 17 15 22 22 H 1.48498 * 109.47180 * 330.00640 * 19 17 15 23 23 C 1.39810 * 119.86014 * 0.24933 * 8 7 6 24 24 C 1.37853 * 119.88708 * 0.02562 * 23 8 7 25 25 F 1.35103 * 119.97907 * 180.02562 * 24 23 8 26 26 H 1.09003 * 109.46654 * 239.99482 * 1 2 3 27 27 H 1.08994 * 109.47445 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46496 * 119.99945 * 1 2 3 29 29 H 0.96995 * 119.99933 * 4.51224 * 4 2 1 30 30 H 1.08002 * 119.94459 * 0.02562 * 6 5 4 31 31 H 1.08005 * 120.01523 * 179.79135 * 7 6 5 32 32 H 1.09004 * 109.47054 * 60.00086 * 14 12 11 33 33 H 1.09001 * 109.47084 * 179.97438 * 14 12 11 34 34 H 1.08997 * 109.47136 * 300.00004 * 14 12 11 35 35 H 0.97001 * 119.99344 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.05600 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5728 -1.1691 0.0945 6 6 4.3107 -0.1532 -0.5041 7 6 5.6846 -0.1540 -0.4167 8 6 6.3391 -1.1719 0.2832 9 6 7.8103 -1.1719 0.3835 10 8 8.4550 -0.2862 -0.1422 11 8 8.4396 -2.1535 1.0588 12 6 9.8891 -2.0892 1.1169 13 1 10.2675 -1.6032 0.2176 14 6 10.3151 -1.2867 2.3480 15 6 10.4506 -3.4847 1.2079 16 1 9.7847 -4.3349 1.2203 17 6 11.8144 -3.6761 1.2741 18 7 12.6252 -2.6408 1.2584 19 14 12.5104 -5.4059 1.3876 20 1 12.7530 -5.9325 0.0204 21 1 13.7897 -5.3763 2.1411 22 1 11.5415 -6.2841 2.0914 23 6 5.5957 -2.1897 0.8883 24 6 4.2206 -2.1861 0.7923 25 9 3.5004 -3.1685 1.3768 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3632 -0.5139 -0.8900 29 1 1.6982 -2.0059 -0.0670 30 1 3.8051 0.6357 -1.0411 31 1 6.2562 0.6337 -0.8849 32 1 9.9367 -1.7728 3.2473 33 1 11.4032 -1.2389 2.3918 34 1 9.9090 -0.2774 2.2822 35 1 13.5847 -2.7755 1.3046 36 1 6.0981 -2.9779 1.4295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774098564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:33 Heat of formation + Delta-G solvation = -163.785615 kcal Electronic energy + Delta-G solvation = -22847.180047 eV Core-core repulsion = 19017.172358 eV Total energy + Delta-G solvation = -3830.007689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.07505 -41.79790 -41.21435 -39.35332 -37.59209 -36.08522 -35.33965 -32.50614 -31.73676 -31.54389 -29.82143 -27.47074 -25.72352 -24.45733 -23.18598 -21.99486 -21.48019 -19.71412 -18.99987 -18.61985 -18.10032 -18.01136 -17.29236 -17.08962 -16.83535 -16.62093 -16.32332 -16.25909 -15.41710 -15.09052 -14.80015 -14.53005 -14.31885 -14.05851 -13.70119 -13.60741 -13.31360 -13.23374 -13.03208 -13.00451 -12.89603 -12.82917 -12.39444 -12.16033 -11.73417 -11.64201 -11.59533 -11.05886 -11.00118 -10.61135 -10.11825 -9.47010 -8.29267 -6.46273 -0.66960 -0.03190 1.21590 1.42201 1.44566 1.55656 1.57185 1.82176 1.90108 2.40019 2.46995 2.86607 3.01691 3.43842 3.64161 3.77978 3.91214 4.04437 4.29144 4.45739 4.52389 4.57062 4.66821 4.77401 4.78946 4.80879 4.87390 5.01652 5.06498 5.15092 5.20923 5.46837 5.59935 5.61401 5.86938 6.02549 6.21945 6.57434 6.85903 6.95486 7.24869 8.78725 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.031583 B = 0.003175 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.351552 B = 8815.848720 C = 9439.767912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.508 3.492 3 O -0.565 6.565 4 N -0.660 5.660 5 C 0.154 3.846 6 C -0.108 4.108 7 C -0.043 4.043 8 C -0.122 4.122 9 C 0.495 3.505 10 O -0.545 6.545 11 O -0.354 6.354 12 C 0.217 3.783 13 H 0.010 0.990 14 C -0.144 4.144 15 C -0.548 4.548 16 H 0.070 0.930 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.985 3.015 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.075 4.075 24 C 0.065 3.935 25 F -0.126 7.126 26 H 0.116 0.884 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.434 0.566 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.023 0.977 35 H 0.271 0.729 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.187 0.342 -2.377 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.300 3.700 3 O -0.443 6.443 4 N -0.308 5.308 5 C 0.057 3.943 6 C -0.128 4.128 7 C -0.062 4.062 8 C -0.124 4.124 9 C 0.341 3.659 10 O -0.438 6.438 11 O -0.270 6.270 12 C 0.164 3.836 13 H 0.028 0.972 14 C -0.201 4.201 15 C -0.585 4.585 16 H 0.088 0.912 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.808 3.192 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.094 4.094 24 C 0.043 3.957 25 F -0.104 7.104 26 H 0.134 0.866 27 H 0.116 0.884 28 H 0.140 0.860 29 H 0.274 0.726 30 H 0.181 0.819 31 H 0.165 0.835 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.486 1.347 -2.458 25.639 hybrid contribution 0.867 -0.960 0.109 1.298 sum -24.618 0.387 -2.349 24.733 Atomic orbital electron populations 1.21984 0.85874 1.07004 1.07190 1.22075 0.92910 0.81838 0.73175 1.90748 1.71647 1.32753 1.49138 1.43534 1.03091 1.11895 1.72243 1.17963 0.85197 0.95226 0.95951 1.21150 0.92112 0.99452 1.00114 1.21306 0.94347 0.96098 0.94453 1.18961 0.88351 0.99406 1.05681 1.21560 0.89770 0.79463 0.75078 1.90759 1.68782 1.37777 1.46435 1.86525 1.26637 1.47291 1.66567 1.20427 0.70675 0.97412 0.95044 0.97208 1.22006 1.03769 0.96325 0.98037 1.21287 0.92544 0.91351 1.53354 0.91203 1.25852 0.96399 1.02516 0.93643 1.70022 1.04232 1.31876 1.49361 0.85155 0.77768 0.77747 0.78578 1.19731 1.20058 1.18571 1.21332 0.91965 0.98443 0.97671 1.17040 0.88777 0.89929 0.99958 1.91517 1.77172 1.59672 1.82079 0.86568 0.88430 0.86015 0.72625 0.81946 0.83522 0.93404 0.89866 0.95802 0.91942 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 10.32 71.24 0.74 0.11 16 2 C 0.51 7.43 7.78 87.66 0.68 8.11 16 3 O -0.57 -13.73 14.48 -3.03 -0.04 -13.77 16 4 N -0.66 -9.12 5.20 -303.32 -1.58 -10.70 16 5 C 0.15 3.32 6.31 38.38 0.24 3.57 16 6 C -0.11 -2.65 8.67 22.34 0.19 -2.46 16 7 C -0.04 -1.26 9.58 22.51 0.22 -1.04 16 8 C -0.12 -4.16 5.87 -20.09 -0.12 -4.27 16 9 C 0.49 22.12 7.86 70.25 0.55 22.68 16 10 O -0.54 -27.30 15.60 19.81 0.31 -26.99 16 11 O -0.35 -17.47 9.10 -56.55 -0.51 -17.98 16 12 C 0.22 12.17 2.56 29.85 0.08 12.25 16 13 H 0.01 0.63 7.16 -2.39 -0.02 0.61 16 14 C -0.14 -7.56 9.33 71.98 0.67 -6.88 16 15 C -0.55 -31.27 8.90 25.60 0.23 -31.04 16 16 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 17 C 0.02 0.86 5.30 84.65 0.45 1.31 16 18 N -0.92 -52.99 11.32 21.45 0.24 -52.74 16 19 Si 0.98 42.91 29.54 68.60 2.03 44.93 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 23 C -0.07 -2.18 9.58 22.56 0.22 -1.97 16 24 C 0.06 1.54 7.30 22.44 0.16 1.70 16 25 F -0.13 -2.68 16.94 44.97 0.76 -1.92 16 26 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.10 0.49 8.12 -2.39 -0.02 0.47 16 28 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.43 2.94 8.65 -92.71 -0.80 2.14 16 30 H 0.16 3.82 6.18 -2.91 -0.02 3.80 16 31 H 0.15 4.26 7.64 -2.91 -0.02 4.24 16 32 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 4.66 6.07 -2.39 -0.01 4.65 16 34 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.16 4.61 7.60 -2.91 -0.02 4.59 16 Total: -1.00 -73.37 322.98 5.85 -67.53 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 0.33 Total: 9.59 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 4.31 Total: 2.05 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -1.34 Total: -63.44 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -0.25 Total: -58.75 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.76 Total: -1.92 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -73.37 5.85 -67.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774098564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.258 kcal (2) G-P(sol) polarization free energy of solvation -73.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds