Wall clock time and date at job start Tue Mar 31 2020 07:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 C 1.50699 * 109.47386 * 179.97438 * 13 12 2 15 15 C 1.38262 * 119.99716 * 260.00251 * 14 13 12 16 16 C 1.38207 * 119.99912 * 179.97438 * 15 14 13 17 17 C 1.38258 * 120.00102 * 0.02562 * 16 15 14 18 18 N 1.48022 * 120.00209 * 180.02562 * 17 16 15 19 19 O 1.21807 * 119.99773 * 359.97438 * 18 17 16 20 20 O 1.21796 * 120.00011 * 179.97438 * 18 17 16 21 21 C 1.38210 * 119.99828 * 359.97438 * 17 16 15 22 22 C 1.38205 * 120.00104 * 79.72557 * 14 13 12 23 23 N 1.48018 * 120.00218 * 0.02562 * 22 14 13 24 24 O 1.21800 * 120.00013 * 180.02562 * 23 22 14 25 25 O 1.21797 * 120.00038 * 359.97438 * 23 22 14 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 31 31 H 1.09003 * 109.46741 * 300.00007 * 13 12 2 32 32 H 1.09003 * 109.47153 * 59.99606 * 13 12 2 33 33 H 1.08003 * 119.99993 * 359.97438 * 15 14 13 34 34 H 1.08007 * 120.00020 * 180.02562 * 16 15 14 35 35 H 1.08007 * 119.99677 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 6 2.5875 -0.5219 3.5559 15 6 1.6962 -0.9742 4.5113 16 6 2.1592 -1.6574 5.6199 17 6 3.5137 -1.8881 5.7739 18 7 4.0095 -2.6203 6.9609 19 8 3.2243 -3.0192 7.8023 20 8 5.2027 -2.8239 7.0963 21 6 4.4046 -1.4359 4.8189 22 6 3.9409 -0.7575 3.7070 23 7 4.8946 -0.2781 2.6815 24 8 6.0873 -0.4862 2.8144 25 8 4.4865 0.3235 1.7042 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 0.7093 1.1619 -3.4844 30 1 2.9173 -1.1205 1.0286 31 1 2.7589 1.0462 2.1181 32 1 1.0871 0.6162 2.5525 33 1 0.6381 -0.7937 4.3912 34 1 1.4629 -2.0111 6.3659 35 1 5.4627 -1.6165 4.9390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775060676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:13 Heat of formation + Delta-G solvation = 33.150691 kcal Electronic energy + Delta-G solvation = -23522.075553 eV Core-core repulsion = 19720.527625 eV Total energy + Delta-G solvation = -3801.547928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.74655 -42.31015 -40.01258 -37.05176 -36.96687 -35.98875 -33.66683 -32.61659 -31.95742 -29.15802 -27.10177 -26.97633 -25.35654 -24.12167 -23.30973 -22.11328 -20.38757 -19.99334 -19.24640 -18.61726 -18.01018 -17.98293 -17.63492 -17.08161 -16.26490 -15.93674 -14.96598 -14.86982 -14.55048 -14.05468 -13.44967 -13.29260 -12.96535 -12.35919 -12.26377 -11.96615 -11.66818 -11.53299 -11.51986 -11.33356 -11.20320 -11.08324 -10.96014 -10.83990 -10.44308 -10.34997 -10.30274 -10.19844 -9.91808 -8.94304 -8.55479 -7.59865 -6.09761 -4.15742 -0.78753 -0.49410 0.69639 0.71388 1.02157 1.22423 2.50557 3.26349 3.34443 3.38713 3.64280 3.77251 3.78798 4.02801 4.15284 4.36638 4.75524 4.78260 4.99188 5.11057 5.18491 5.27152 5.44382 5.73877 5.82978 5.88855 6.26100 6.68756 6.96139 7.01862 7.20196 7.27619 7.48021 7.67681 7.73650 8.05564 8.16085 8.43429 8.90161 9.50208 10.96845 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.003816 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.164694 B = 7334.826502 C = 7866.887439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.214 3.786 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.669 5.669 13 C 0.063 3.937 14 C 0.052 3.948 15 C -0.101 4.101 16 C -0.010 4.010 17 C -0.058 4.058 18 N 0.032 4.968 19 O -0.148 6.148 20 O -0.150 6.150 21 C 0.008 3.992 22 C -0.046 4.046 23 N 0.025 4.975 24 O -0.158 6.158 25 O -0.117 6.117 26 H 0.004 0.996 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -2.041 16.614 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 H 0.030 0.970 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.302 5.302 13 C -0.066 4.066 14 C 0.050 3.950 15 C -0.121 4.121 16 C -0.029 4.029 17 C -0.142 4.142 18 N 0.553 4.447 19 O -0.365 6.365 20 O -0.367 6.367 21 C -0.012 4.012 22 C -0.131 4.131 23 N 0.546 4.454 24 O -0.371 6.371 25 O -0.336 6.336 26 H 0.023 0.977 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.191 0.809 34 H 0.188 0.812 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.118 -2.045 16.545 16.672 hybrid contribution 1.471 -0.041 -0.994 1.775 sum 1.589 -2.086 15.551 15.771 Atomic orbital electron populations 1.21762 0.97679 0.99436 0.99587 1.19162 0.92394 0.92965 0.84699 0.97049 1.21185 1.31495 1.12573 0.90228 0.92318 1.24868 0.94929 0.94950 0.99016 1.69879 1.36610 1.22789 1.23521 0.86453 0.78592 0.79667 0.82771 1.19791 1.21011 1.20909 1.61247 1.31906 1.31217 1.05836 1.21583 1.01904 0.95034 0.88052 1.20723 0.89464 0.88549 0.96295 1.21282 1.01727 0.97545 0.91523 1.21487 0.92818 0.91136 0.97446 1.20729 0.94585 1.07897 0.90964 1.43346 1.00975 0.99045 1.01304 1.94564 1.53449 1.52559 1.35970 1.94593 0.98950 1.60558 1.82611 1.20597 1.03050 0.89084 0.88483 1.20754 0.90162 1.09125 0.93042 1.43338 1.01372 0.99468 1.01217 1.94557 0.98402 1.60941 1.83188 1.94667 1.82425 1.37953 1.18556 0.97738 0.94907 0.89727 0.92876 0.85054 0.90475 0.89136 0.80948 0.81222 0.80376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.19 37.16 0.34 -2.53 16 2 C 0.21 5.05 2.60 -68.87 -0.18 4.87 16 3 H 0.01 0.30 7.80 -51.93 -0.40 -0.10 16 4 C -0.52 -13.68 8.59 -34.44 -0.30 -13.98 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.67 -12.89 6.13 -109.22 -0.67 -13.56 16 13 C 0.06 0.95 4.72 -4.98 -0.02 0.92 16 14 C 0.05 0.62 5.39 -104.63 -0.56 0.06 16 15 C -0.10 -0.86 9.67 -39.58 -0.38 -1.25 16 16 C -0.01 -0.08 9.56 -39.59 -0.38 -0.46 16 17 C -0.06 -0.58 6.85 -79.95 -0.55 -1.13 16 18 N 0.03 0.36 4.45 33.96 0.15 0.52 16 19 O -0.15 -1.72 18.45 -29.46 -0.54 -2.27 16 20 O -0.15 -1.88 18.45 -29.46 -0.54 -2.42 16 21 C 0.01 0.08 9.06 -39.58 -0.36 -0.27 16 22 C -0.05 -0.59 6.83 -79.95 -0.55 -1.13 16 23 N 0.03 0.39 4.45 33.96 0.15 0.54 16 24 O -0.16 -2.47 18.45 -29.46 -0.54 -3.01 16 25 O -0.12 -2.08 13.82 -29.46 -0.41 -2.49 16 26 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.33 6.69 6.70 -39.29 -0.26 6.43 16 31 H 0.08 1.25 5.81 -51.93 -0.30 0.95 16 32 H 0.09 1.23 7.30 -51.93 -0.38 0.85 16 33 H 0.17 1.06 8.04 -52.48 -0.42 0.63 16 34 H 0.17 0.90 7.61 -52.48 -0.40 0.50 16 35 H 0.18 1.80 7.16 -52.48 -0.38 1.42 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -28.99 312.18 -8.33 -37.32 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.21 Total: 1.87 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -3.03 Total: -13.26 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.26 Total: -36.39 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -2.04 Total: -10.19 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.99 -8.33 -37.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775060676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.471 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds