Wall clock time and date at job start Tue Mar 31 2020 07:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 5 5 H 1.08006 * 120.00161 * 119.99863 * 4 2 1 6 6 C 1.37881 * 119.99813 * 299.99895 * 4 2 1 7 7 N 1.31507 * 120.00087 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99843 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47217 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47434 * 119.99828 * 8 6 4 11 11 H 1.48499 * 109.47073 * 239.99773 * 8 6 4 12 12 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 13 13 C 1.46906 * 110.99573 * 85.00442 * 12 2 1 14 14 C 1.50699 * 109.46990 * 180.02562 * 13 12 2 15 15 C 1.38254 * 120.00070 * 259.72881 * 14 13 12 16 16 C 1.38208 * 120.00112 * 179.76681 * 15 14 13 17 17 C 1.38258 * 120.00283 * 0.48316 * 16 15 14 18 18 N 1.48012 * 120.00630 * 179.76761 * 17 16 15 19 19 O 1.21801 * 120.00298 * 180.02562 * 18 17 16 20 20 O 1.21805 * 119.99729 * 0.02655 * 18 17 16 21 21 C 1.38222 * 119.99663 * 359.78887 * 17 16 15 22 22 C 1.38213 * 120.00140 * 79.99638 * 14 13 12 23 23 N 1.48021 * 119.99754 * 0.02562 * 22 14 13 24 24 O 1.21801 * 119.99772 * 179.97438 * 23 22 14 25 25 O 1.21794 * 120.00370 * 359.97438 * 23 22 14 26 26 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 27 27 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 28 28 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 29 29 H 0.97004 * 120.00261 * 180.02562 * 7 6 4 30 30 H 1.00896 * 111.00219 * 208.96081 * 12 2 1 31 31 H 1.09002 * 109.46991 * 299.99841 * 13 12 2 32 32 H 1.09000 * 109.47202 * 60.00133 * 13 12 2 33 33 H 1.07998 * 119.99763 * 359.97438 * 15 14 13 34 34 H 1.08006 * 120.00543 * 180.25353 * 16 15 14 35 35 H 1.07996 * 119.99805 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.1470 -2.2864 3.6039 10 1 3.1470 -0.1859 4.8162 11 1 1.1674 -1.5865 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5874 -0.5220 -3.5560 15 6 3.9101 -0.4010 -3.9397 16 6 4.3743 -1.0876 -5.0458 17 6 3.5136 -1.8875 -5.7744 18 7 4.0094 -2.6187 -6.9619 19 8 3.2510 -3.3230 -7.6040 20 8 5.1760 -2.5161 -7.2970 21 6 2.1899 -2.0040 -5.3940 22 6 1.7268 -1.3213 -4.2845 23 7 0.3092 -1.4457 -3.8774 24 8 -0.4493 -2.1497 -4.5197 25 8 -0.0989 -0.8440 -2.9003 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 0.7094 1.1619 3.4844 30 1 2.9172 -1.1207 -1.0286 31 1 1.0871 0.6162 -2.5525 32 1 2.7590 1.0461 -2.1182 33 1 4.5814 0.2273 -3.3732 34 1 5.4086 -0.9963 -5.3432 35 1 1.5174 -2.6285 -5.9634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775060679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:16 Heat of formation + Delta-G solvation = 34.759196 kcal Electronic energy + Delta-G solvation = -23532.225040 eV Core-core repulsion = 19730.746862 eV Total energy + Delta-G solvation = -3801.478178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.69576 -42.14180 -39.97550 -36.97790 -36.82326 -35.96126 -33.65593 -32.57950 -31.96422 -29.10587 -27.01736 -26.89198 -25.32358 -24.16183 -23.16830 -22.11043 -20.29202 -19.96012 -19.20694 -18.46838 -17.96895 -17.90462 -17.42964 -17.10941 -16.23408 -15.92832 -15.06119 -14.86823 -14.27979 -14.12332 -13.44644 -13.35585 -12.84073 -12.42623 -12.30832 -11.95963 -11.65446 -11.51308 -11.37938 -11.29476 -11.05349 -10.93023 -10.89048 -10.61528 -10.41783 -10.32443 -10.18179 -10.12038 -9.92206 -8.90970 -8.57872 -7.58166 -6.12260 -4.19649 -0.76683 -0.41064 0.71753 0.75440 1.15775 1.36684 2.53240 3.21926 3.30820 3.33529 3.66258 3.80966 3.81630 4.01669 4.18202 4.32352 4.76044 4.81327 4.99284 5.03689 5.18607 5.30464 5.42899 5.69941 5.83222 5.89451 6.42941 6.81227 7.15625 7.19040 7.20993 7.37573 7.66191 7.70003 7.81759 8.14271 8.22125 8.43812 8.87834 9.46652 10.93609 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022488 B = 0.003805 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.798620 B = 7356.042408 C = 8031.235709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.218 3.782 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.282 1.282 12 N -0.670 5.670 13 C 0.068 3.932 14 C 0.045 3.955 15 C -0.114 4.114 16 C -0.011 4.011 17 C -0.057 4.057 18 N 0.031 4.969 19 O -0.150 6.150 20 O -0.149 6.149 21 C 0.004 3.996 22 C -0.029 4.029 23 N 0.024 4.976 24 O -0.185 6.185 25 O -0.073 6.073 26 H 0.078 0.922 27 H 0.015 0.985 28 H 0.033 0.967 29 H 0.262 0.738 30 H 0.329 0.671 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 -0.604 -15.057 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 H 0.021 0.979 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.208 1.208 12 N -0.302 5.302 13 C -0.061 4.061 14 C 0.043 3.957 15 C -0.134 4.134 16 C -0.030 4.030 17 C -0.141 4.141 18 N 0.553 4.447 19 O -0.367 6.367 20 O -0.366 6.366 21 C -0.016 4.016 22 C -0.113 4.113 23 N 0.547 4.453 24 O -0.390 6.390 25 O -0.304 6.304 26 H 0.096 0.904 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.132 0.868 32 H 0.064 0.936 33 H 0.187 0.813 34 H 0.187 0.813 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 5.903 -0.387 -14.784 15.923 hybrid contribution 0.909 -0.233 0.846 1.263 sum 6.812 -0.620 -13.937 15.525 Atomic orbital electron populations 1.21660 0.96795 0.99857 0.99595 1.19155 0.93370 0.92065 0.84253 0.97868 1.21232 1.31879 1.12654 0.90360 0.92312 1.24883 0.94920 0.94950 0.99002 1.69899 1.36261 1.22705 1.23533 0.86473 0.78668 0.79550 0.82867 1.19866 1.21072 1.20847 1.60884 1.31486 1.32274 1.05560 1.21588 1.02844 0.93670 0.87972 1.20725 0.92060 0.88896 0.94031 1.21310 0.94522 1.00916 0.96611 1.21430 1.01099 0.89181 0.91303 1.20739 0.94829 1.05185 0.93320 1.43354 1.00795 0.99459 1.01088 1.94595 1.54189 1.35671 1.52222 1.94561 1.01211 1.68474 1.72386 1.20642 0.94132 0.93841 0.92968 1.20689 0.84739 1.06352 0.99502 1.43244 1.01720 0.99945 1.00347 1.94548 1.52286 1.37786 1.54377 1.94701 1.79437 1.42310 1.13971 0.90362 0.96587 0.94794 0.92837 0.85458 0.86837 0.93586 0.81256 0.81326 0.80429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.54 37.16 0.32 -2.53 16 2 C 0.22 5.04 2.60 -68.86 -0.18 4.86 16 3 H 0.00 0.09 7.80 -51.93 -0.40 -0.31 16 4 C -0.52 -13.46 8.59 -34.44 -0.30 -13.76 16 5 H 0.06 1.50 7.62 -52.48 -0.40 1.10 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.19 11.32 55.43 0.63 -23.56 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.67 -12.49 5.54 -109.22 -0.61 -13.09 16 13 C 0.07 1.00 4.63 -4.97 -0.02 0.97 16 14 C 0.05 0.53 5.39 -104.63 -0.56 -0.03 16 15 C -0.11 -0.95 9.67 -39.59 -0.38 -1.33 16 16 C -0.01 -0.09 9.56 -39.59 -0.38 -0.47 16 17 C -0.06 -0.58 6.85 -79.95 -0.55 -1.13 16 18 N 0.03 0.37 4.45 33.96 0.15 0.52 16 19 O -0.15 -1.90 18.45 -29.46 -0.54 -2.45 16 20 O -0.15 -1.76 18.45 -29.46 -0.54 -2.30 16 21 C 0.00 0.05 9.06 -39.58 -0.36 -0.31 16 22 C -0.03 -0.37 6.85 -79.95 -0.55 -0.92 16 23 N 0.02 0.38 4.45 33.96 0.15 0.53 16 24 O -0.19 -3.01 18.45 -29.46 -0.54 -3.55 16 25 O -0.07 -1.30 13.12 -29.46 -0.39 -1.69 16 26 H 0.08 2.03 6.07 -51.93 -0.32 1.72 16 27 H 0.02 0.33 6.50 -51.92 -0.34 -0.01 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.33 5.88 8.22 -39.29 -0.32 5.55 16 31 H 0.11 1.80 5.19 -51.93 -0.27 1.53 16 32 H 0.05 0.61 7.92 -51.93 -0.41 0.20 16 33 H 0.17 0.97 8.04 -52.49 -0.42 0.55 16 34 H 0.17 0.91 7.61 -52.48 -0.40 0.51 16 35 H 0.18 1.88 7.16 -52.49 -0.38 1.50 16 LS Contribution 310.71 15.07 4.68 4.68 Total: -1.00 -28.89 310.71 -8.30 -37.19 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.22 Total: 1.29 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -3.05 Total: -13.02 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.32 Total: -35.60 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -2.02 Total: -9.99 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.89 -8.30 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775060679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.954 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds