Wall clock time and date at job start Tue Mar 31 2020 07:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47191 * 2 1 4 4 C 1.50699 * 109.46719 * 120.00116 * 2 1 3 5 5 H 1.08006 * 120.00161 * 119.99863 * 4 2 1 6 6 C 1.37881 * 119.99813 * 299.99895 * 4 2 1 7 7 N 1.31507 * 120.00087 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99843 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47217 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47434 * 119.99828 * 8 6 4 11 11 H 1.48499 * 109.47073 * 239.99773 * 8 6 4 12 12 N 1.46902 * 109.47197 * 239.99431 * 2 1 3 13 13 C 1.46906 * 110.99573 * 85.00442 * 12 2 1 14 14 C 1.50699 * 109.46990 * 180.02562 * 13 12 2 15 15 C 1.38254 * 120.00070 * 259.72881 * 14 13 12 16 16 C 1.38208 * 120.00112 * 179.76681 * 15 14 13 17 17 C 1.38258 * 120.00283 * 0.48316 * 16 15 14 18 18 N 1.48012 * 120.00630 * 179.76761 * 17 16 15 19 19 O 1.21801 * 120.00298 * 180.02562 * 18 17 16 20 20 O 1.21805 * 119.99729 * 0.02655 * 18 17 16 21 21 C 1.38222 * 119.99663 * 359.78887 * 17 16 15 22 22 C 1.38213 * 120.00140 * 79.99638 * 14 13 12 23 23 N 1.48021 * 119.99754 * 0.02562 * 22 14 13 24 24 O 1.21801 * 119.99772 * 179.97438 * 23 22 14 25 25 O 1.21794 * 120.00370 * 359.97438 * 23 22 14 26 26 H 1.09000 * 109.47499 * 300.00664 * 1 2 3 27 27 H 1.09011 * 109.46887 * 60.00236 * 1 2 3 28 28 H 1.08999 * 109.47708 * 180.02562 * 1 2 3 29 29 H 0.97004 * 120.00261 * 180.02562 * 7 6 4 30 30 H 1.00896 * 111.00219 * 208.96081 * 12 2 1 31 31 H 1.09002 * 109.46991 * 299.99841 * 13 12 2 32 32 H 1.09000 * 109.47202 * 60.00133 * 13 12 2 33 33 H 1.07998 * 119.99763 * 359.97438 * 15 14 13 34 34 H 1.08006 * 120.00543 * 180.25353 * 16 15 14 35 35 H 1.07996 * 119.99805 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3222 -1.1196 4.0080 9 1 3.1470 -2.2864 3.6039 10 1 3.1470 -0.1859 4.8162 11 1 1.1674 -1.5865 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5874 -0.5220 -3.5560 15 6 3.9101 -0.4010 -3.9397 16 6 4.3743 -1.0876 -5.0458 17 6 3.5136 -1.8875 -5.7744 18 7 4.0094 -2.6187 -6.9619 19 8 3.2510 -3.3230 -7.6040 20 8 5.1760 -2.5161 -7.2970 21 6 2.1899 -2.0040 -5.3940 22 6 1.7268 -1.3213 -4.2845 23 7 0.3092 -1.4457 -3.8774 24 8 -0.4493 -2.1497 -4.5197 25 8 -0.0989 -0.8440 -2.9003 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 0.7094 1.1619 3.4844 30 1 2.9172 -1.1207 -1.0286 31 1 1.0871 0.6162 -2.5525 32 1 2.7590 1.0461 -2.1182 33 1 4.5814 0.2273 -3.3732 34 1 5.4086 -0.9963 -5.3432 35 1 1.5174 -2.6285 -5.9634 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775060679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:15 Heat of formation + Delta-G solvation = 18.253836 kcal Electronic energy + Delta-G solvation = -23532.940767 eV Core-core repulsion = 19730.746862 eV Total energy + Delta-G solvation = -3802.193904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.63396 -43.23399 -40.90448 -38.15112 -37.87443 -37.39245 -35.10340 -33.60858 -33.30529 -30.60228 -28.23409 -28.01711 -27.21503 -25.31136 -24.13966 -23.12693 -21.76497 -21.24998 -20.15050 -19.57321 -18.92612 -18.86552 -18.68596 -18.56547 -17.30321 -17.13412 -16.71619 -15.83194 -15.66021 -15.36137 -14.78183 -14.52408 -13.93771 -13.80384 -13.64612 -13.11146 -12.88216 -12.79962 -12.70997 -12.61696 -12.53938 -12.44044 -12.24287 -12.20800 -12.11035 -12.05948 -11.63997 -11.22563 -10.97151 -10.78735 -10.55127 -9.10634 -8.11557 -6.24887 -1.66776 -1.40219 -0.18233 -0.14695 0.08007 0.35048 1.41343 1.45171 1.54475 1.68480 2.42103 2.84762 2.86118 2.99643 3.16869 3.18083 3.35419 3.77021 3.92067 3.97634 4.24550 4.34133 4.60759 4.65325 4.74318 4.95079 5.00296 5.21028 5.29310 5.32555 5.52428 5.67876 5.91613 6.26773 6.27156 6.40561 6.45658 6.72311 6.98654 7.45197 8.93800 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.022488 B = 0.003805 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.798620 B = 7356.042408 C = 8031.235709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.226 3.774 3 H -0.016 1.016 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.286 1.286 12 N -0.674 5.674 13 C 0.071 3.929 14 C 0.038 3.962 15 C -0.091 4.091 16 C 0.016 3.984 17 C -0.056 4.056 18 N 0.032 4.968 19 O -0.188 6.188 20 O -0.128 6.128 21 C 0.005 3.995 22 C -0.040 4.040 23 N 0.027 4.973 24 O -0.191 6.191 25 O -0.123 6.123 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.017 0.983 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.207 0.793 34 H 0.208 0.792 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.174 -0.666 -15.894 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 H 0.001 0.999 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.212 1.212 12 N -0.306 5.306 13 C -0.057 4.057 14 C 0.036 3.964 15 C -0.110 4.110 16 C -0.003 4.003 17 C -0.140 4.140 18 N 0.552 4.448 19 O -0.396 6.396 20 O -0.352 6.352 21 C -0.015 4.015 22 C -0.124 4.124 23 N 0.545 4.455 24 O -0.398 6.398 25 O -0.344 6.344 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.224 0.776 34 H 0.225 0.775 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.799 -0.459 -15.608 17.923 hybrid contribution 0.127 -0.214 0.950 0.982 sum 8.926 -0.673 -14.657 17.174 Atomic orbital electron populations 1.21459 0.97629 0.98466 0.98913 1.18846 0.92661 0.91047 0.85610 0.99881 1.21582 1.31625 1.12610 0.91565 0.92370 1.25636 0.95202 0.95633 1.01798 1.70021 1.37319 1.23962 1.24044 0.85523 0.77985 0.78645 0.79506 1.19227 1.20500 1.21194 1.60591 1.31973 1.33055 1.04975 1.21446 1.02852 0.93860 0.87590 1.20565 0.93443 0.89162 0.93256 1.21669 0.92924 1.00156 0.96276 1.21880 1.02244 0.86561 0.89605 1.20835 0.94708 1.05403 0.93015 1.43504 1.00694 0.99355 1.01289 1.94623 1.54415 1.37205 1.53328 1.94540 1.01112 1.67517 1.72065 1.20601 0.94908 0.93613 0.92410 1.20669 0.82738 1.08187 1.00847 1.43637 1.03026 0.99112 0.99766 1.94513 1.53695 1.37555 1.54078 1.94703 1.80658 1.43760 1.15301 0.93018 0.95192 0.96357 0.92893 0.84818 0.88544 0.91616 0.77586 0.77540 0.80510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.18 8.54 71.98 0.61 -4.57 16 2 C 0.23 10.59 2.60 44.17 0.11 10.70 16 3 H -0.02 -0.82 7.80 -2.39 -0.02 -0.84 16 4 C -0.54 -27.64 8.59 25.60 0.22 -27.42 16 5 H 0.06 2.94 7.62 -2.91 -0.02 2.92 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.91 -50.73 11.32 21.45 0.24 -50.48 16 8 Si 0.96 41.93 29.54 68.60 2.03 43.95 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 12 N -0.67 -24.83 5.54 -499.45 -2.77 -27.60 16 13 C 0.07 2.00 4.63 85.56 0.40 2.40 16 14 C 0.04 0.80 5.39 -19.87 -0.11 0.70 16 15 C -0.09 -1.07 9.67 22.27 0.22 -0.86 16 16 C 0.02 0.17 9.56 22.27 0.21 0.38 16 17 C -0.06 -0.95 6.85 36.38 0.25 -0.71 16 18 N 0.03 0.65 4.45 -46.46 -0.21 0.45 16 19 O -0.19 -4.56 18.45 18.88 0.35 -4.22 16 20 O -0.13 -2.54 18.45 18.88 0.35 -2.19 16 21 C 0.00 0.10 9.06 22.27 0.20 0.30 16 22 C -0.04 -0.98 6.85 36.37 0.25 -0.73 16 23 N 0.03 0.87 4.45 -46.46 -0.21 0.67 16 24 O -0.19 -6.35 18.45 18.88 0.35 -6.01 16 25 O -0.12 -4.54 13.12 18.89 0.25 -4.29 16 26 H 0.05 2.78 6.07 -2.39 -0.01 2.77 16 27 H 0.03 1.32 6.50 -2.38 -0.02 1.31 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.33 11.51 8.22 -89.70 -0.74 10.77 16 31 H 0.10 3.10 5.19 -2.39 -0.01 3.09 16 32 H 0.07 1.60 7.92 -2.39 -0.02 1.59 16 33 H 0.21 1.04 8.04 -2.91 -0.02 1.01 16 34 H 0.21 0.77 7.61 -2.91 -0.02 0.75 16 35 H 0.18 3.67 7.16 -2.91 -0.02 3.64 16 Total: -1.00 -64.59 310.71 3.62 -60.97 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.43 Total: 7.21 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 2.82 Total: -18.47 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.94 Total: -76.97 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 1.29 Total: -16.70 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -64.59 3.62 -60.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775060679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.220 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds