Wall clock time and date at job start Tue Mar 31 2020 07:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00109 * 2 1 4 4 H 1.09011 * 109.47152 * 29.99541 * 3 2 1 5 5 C 1.53003 * 109.47132 * 270.00228 * 3 2 1 6 6 C 1.53003 * 109.47518 * 149.99746 * 3 2 1 7 7 N 1.46502 * 109.46966 * 300.00217 * 6 3 2 8 8 C 1.34770 * 119.99786 * 179.97438 * 7 6 3 9 9 O 1.21615 * 120.00093 * 359.97438 * 8 7 6 10 10 C 1.47430 * 120.00270 * 179.97438 * 8 7 6 11 11 C 1.39676 * 120.21100 * 359.97438 * 10 8 7 12 12 C 1.37801 * 119.93693 * 179.97438 * 11 10 8 13 13 C 1.38659 * 120.38386 * 0.02796 * 12 11 10 14 14 C 1.37907 * 120.43730 * 359.97027 * 13 12 11 15 15 C 1.39116 * 120.05002 * 359.72840 * 14 13 12 16 16 S 1.76200 * 120.19351 * 180.27423 * 15 14 13 17 17 C 1.76207 * 99.99575 * 6.86371 * 16 15 14 18 18 H 1.07994 * 120.00400 * 5.66062 * 17 16 15 19 19 C 1.38812 * 119.99676 * 185.65828 * 17 16 15 20 20 N 1.31553 * 119.99789 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46608 * 90.00307 * 21 19 17 23 23 H 1.48497 * 109.46743 * 209.99775 * 21 19 17 24 24 H 1.48499 * 109.47063 * 330.00400 * 21 19 17 25 25 H 1.08993 * 109.47143 * 59.99928 * 1 2 3 26 26 H 1.09000 * 109.46912 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47131 * 300.00244 * 1 2 3 28 28 H 1.09003 * 109.47327 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.46384 * 299.99839 * 5 3 2 30 30 H 1.09000 * 109.47116 * 59.99837 * 5 3 2 31 31 H 1.09005 * 109.46888 * 179.97438 * 6 3 2 32 32 H 1.09000 * 109.46614 * 59.99854 * 6 3 2 33 33 H 0.96995 * 119.99904 * 359.97438 * 7 6 3 34 34 H 1.07997 * 120.03232 * 359.97438 * 11 10 8 35 35 H 1.08008 * 119.80925 * 179.97438 * 12 11 10 36 36 H 1.08000 * 119.78410 * 179.97438 * 13 12 11 37 37 H 1.07998 * 119.97605 * 180.02562 * 14 13 12 38 38 H 0.97000 * 119.99296 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2633 0.7213 7 7 3.1602 0.8172 2.1025 8 6 4.2161 0.7031 2.9322 9 8 5.3339 0.9700 2.5342 10 6 4.0162 0.2547 4.3224 11 6 2.7344 -0.0525 4.7844 12 6 2.5541 -0.4716 6.0847 13 6 3.6389 -0.5902 6.9401 14 6 4.9113 -0.2911 6.5004 15 6 5.1149 0.1276 5.1894 16 16 6.7399 0.5039 4.6216 17 6 7.6798 -0.0138 6.0192 18 1 7.1908 -0.5071 6.8462 19 6 9.0488 0.2124 6.0573 20 7 9.6444 0.8137 5.0501 21 14 10.0454 -0.3371 7.5386 22 1 10.5314 -1.7234 7.3215 23 1 11.2059 0.5717 7.7191 24 1 9.1911 -0.2965 8.7526 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.6606 2.7673 -1.4426 29 1 2.8829 1.0774 -1.9563 30 1 1.2568 1.8014 -1.9563 31 1 3.8024 2.2591 0.7208 32 1 4.0241 0.5694 0.2075 33 1 2.2688 0.6040 2.4198 34 1 1.8853 0.0383 4.1231 35 1 1.5619 -0.7082 6.4399 36 1 3.4865 -0.9192 7.9574 37 1 5.7510 -0.3865 7.1729 38 1 10.6010 0.9721 5.0769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785435009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:29 Heat of formation + Delta-G solvation = -80.943980 kcal Electronic energy + Delta-G solvation = -20914.035284 eV Core-core repulsion = 17653.833054 eV Total energy + Delta-G solvation = -3260.202230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03309 -39.44386 -38.76473 -35.73855 -34.75885 -33.06956 -31.79095 -31.68921 -27.85266 -27.78848 -27.03683 -24.37994 -23.39650 -22.43380 -21.53823 -19.93208 -18.81589 -17.82519 -17.40932 -17.23511 -17.04982 -16.20105 -16.00254 -15.93513 -15.52785 -15.32715 -15.17992 -14.67798 -14.38198 -14.11778 -13.66497 -13.43827 -13.29506 -13.23342 -13.02762 -12.98077 -12.87110 -12.54291 -12.27564 -12.04350 -11.69658 -11.49855 -11.40229 -11.27974 -10.59695 -10.41124 -10.13627 -9.90654 -9.75202 -8.46122 -8.44512 -6.23759 0.04384 0.54492 1.27063 1.36953 1.45648 1.65270 2.02822 2.17203 2.29191 2.80324 2.88382 3.05254 3.25648 3.77666 3.94003 4.02578 4.06877 4.21853 4.27907 4.55349 4.57573 4.61316 4.62520 4.64247 4.77452 4.82892 4.87025 4.95874 4.97988 5.11734 5.27811 5.37078 5.45949 5.51241 5.58262 5.67898 6.10663 6.17089 6.28448 6.63776 6.96437 7.36887 8.61165 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.021504 B = 0.003961 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.764499 B = 7066.737686 C = 8234.958502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.406 6.406 3 C 0.083 3.917 4 H 0.090 0.910 5 C -0.170 4.170 6 C 0.121 3.879 7 N -0.709 5.709 8 C 0.544 3.456 9 O -0.558 6.558 10 C -0.182 4.182 11 C -0.054 4.054 12 C -0.157 4.157 13 C -0.069 4.069 14 C -0.175 4.175 15 C -0.073 4.073 16 S 0.063 5.937 17 C -0.603 4.603 18 H 0.095 0.905 19 C 0.024 3.976 20 N -0.905 5.905 21 Si 0.994 3.006 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.257 1.257 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.411 0.589 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.151 0.849 37 H 0.119 0.881 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.552 -0.134 -5.433 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.326 6.326 3 C 0.025 3.975 4 H 0.108 0.892 5 C -0.228 4.228 6 C -0.003 4.003 7 N -0.363 5.363 8 C 0.333 3.667 9 O -0.439 6.439 10 C -0.196 4.196 11 C -0.073 4.073 12 C -0.180 4.180 13 C -0.090 4.090 14 C -0.200 4.200 15 C -0.191 4.191 16 S 0.321 5.679 17 C -0.749 4.749 18 H 0.112 0.888 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.815 3.185 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.181 1.181 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.249 0.751 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.168 0.832 37 H 0.137 0.863 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.761 0.507 -6.945 21.898 hybrid contribution 0.349 -0.590 1.793 1.920 sum -20.412 -0.083 -5.152 21.052 Atomic orbital electron populations 1.23015 0.79351 1.03784 1.01225 1.87976 1.21561 1.27798 1.95244 1.22348 0.92950 0.85451 0.96740 0.89240 1.22194 1.03390 1.02226 0.94947 1.21544 0.97551 1.00192 0.80975 1.45503 1.09802 1.69326 1.11662 1.18539 0.84492 0.77660 0.86054 1.90782 1.25051 1.50888 1.77154 1.19498 0.94474 1.12385 0.93217 1.21419 0.94019 0.94943 0.96962 1.21326 0.99958 1.03466 0.93209 1.21547 0.91244 0.95397 1.00835 1.21452 0.99306 1.04594 0.94642 1.22999 0.99578 0.99298 0.97247 1.84945 0.92028 1.70779 1.20120 1.24257 0.96823 1.45322 1.08537 0.88771 1.26165 0.98041 0.93688 1.00289 1.70137 1.11626 1.39729 1.32547 0.85022 0.77475 0.78441 0.77532 1.19165 1.19750 1.18052 0.92926 0.88951 0.92469 0.90265 0.92524 0.90371 0.90443 0.93062 0.75097 0.82442 0.81559 0.83181 0.86321 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.47 16 2 O -0.41 -7.75 10.09 -148.98 -1.50 -9.26 16 3 C 0.08 1.43 2.81 30.60 0.09 1.52 16 4 H 0.09 1.14 7.79 -2.38 -0.02 1.12 16 5 C -0.17 -2.44 9.53 71.98 0.69 -1.75 16 6 C 0.12 3.13 5.37 86.38 0.46 3.60 16 7 N -0.71 -20.37 5.40 -466.35 -2.52 -22.89 16 8 C 0.54 22.11 7.75 86.67 0.67 22.78 16 9 O -0.56 -28.57 13.77 -4.08 -0.06 -28.63 16 10 C -0.18 -7.26 5.89 -19.95 -0.12 -7.38 16 11 C -0.05 -1.49 9.53 22.51 0.21 -1.28 16 12 C -0.16 -3.91 10.02 22.27 0.22 -3.68 16 13 C -0.07 -2.11 10.03 22.29 0.22 -1.89 16 14 C -0.17 -7.39 9.22 22.40 0.21 -7.19 16 15 C -0.07 -3.52 6.14 23.04 0.14 -3.37 16 16 S 0.06 3.70 18.56 -56.49 -1.05 2.65 16 17 C -0.60 -35.83 9.00 67.96 0.61 -35.22 16 18 H 0.09 5.27 4.98 -2.91 -0.01 5.25 16 19 C 0.02 1.38 5.49 84.87 0.47 1.85 16 20 N -0.91 -56.26 13.22 21.65 0.29 -55.98 16 21 Si 0.99 44.48 29.55 68.60 2.03 46.51 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 H 0.05 0.46 7.87 -2.39 -0.02 0.44 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.46 8.09 -2.39 -0.02 0.44 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.86 7.87 -2.39 -0.02 0.84 16 31 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.41 8.82 6.38 -92.71 -0.59 8.23 16 34 H 0.16 2.87 6.40 -2.91 -0.02 2.85 16 35 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 37 H 0.12 5.42 5.04 -2.91 -0.01 5.41 16 38 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -80.89 333.06 2.78 -78.11 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.49 Total: 20.03 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 5.10 Total: -30.55 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.23 Total: -78.87 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.56 Total: -37.88 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.05 Total: 2.65 kcal Total: -80.89 2.78 -78.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785435009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.836 kcal (2) G-P(sol) polarization free energy of solvation -80.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds