Wall clock time and date at job start Tue Mar 31 2020 06:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46786 * 2 1 4 4 H 1.09002 * 109.47164 * 305.00007 * 3 2 1 5 5 C 1.50708 * 109.47018 * 185.00028 * 3 2 1 6 6 H 1.07995 * 119.99940 * 239.99755 * 5 3 2 7 7 C 1.37876 * 119.99840 * 60.00421 * 5 3 2 8 8 N 1.31512 * 120.00091 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00124 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47426 * 89.99582 * 9 7 5 11 11 H 1.48493 * 109.47458 * 210.00114 * 9 7 5 12 12 H 1.48503 * 109.47098 * 329.99776 * 9 7 5 13 13 N 1.46904 * 109.47129 * 65.00283 * 3 2 1 14 14 C 1.39674 * 110.99920 * 269.18778 * 13 3 2 15 15 C 1.38910 * 120.06961 * 295.48740 * 14 13 3 16 16 N 1.48026 * 120.03927 * 359.97212 * 15 14 13 17 17 O 1.21802 * 119.99718 * 172.38839 * 16 15 14 18 18 O 1.21791 * 120.00028 * 352.38680 * 16 15 14 19 19 C 1.38102 * 119.92075 * 179.74706 * 15 14 13 20 20 C 1.38285 * 120.07468 * 0.52576 * 19 15 14 21 21 C 1.38278 * 120.15059 * 359.72689 * 20 19 15 22 22 C 1.38102 * 120.07496 * 0.02562 * 21 20 19 23 23 N 1.48026 * 120.04083 * 180.02562 * 22 21 20 24 24 O 1.21800 * 119.99532 * 359.97438 * 23 22 21 25 25 O 1.21796 * 120.00279 * 179.97438 * 23 22 21 26 26 H 1.09009 * 109.46757 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47205 * 299.99347 * 1 2 3 28 28 H 1.08994 * 109.47663 * 59.99833 * 1 2 3 29 29 H 1.09005 * 109.47205 * 240.00653 * 2 1 3 30 30 H 1.08994 * 109.47663 * 120.00167 * 2 1 3 31 31 H 0.97001 * 120.00031 * 180.02562 * 8 7 5 32 32 H 1.00897 * 110.99957 * 145.22352 * 13 3 2 33 33 H 1.08000 * 119.96230 * 180.25166 * 19 15 14 34 34 H 1.08002 * 119.92685 * 179.74390 * 20 19 15 35 35 H 1.08001 * 119.96654 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0048 0.8815 -1.3820 10 1 6.5548 -0.3498 -0.7604 11 1 6.3828 0.9228 -2.8174 12 1 6.5568 2.0741 -0.6903 13 7 1.6513 2.0993 1.2553 14 6 0.4130 2.7325 1.1264 15 6 0.2646 3.7992 0.2491 16 7 1.4192 4.2672 -0.5504 17 8 1.2589 5.1072 -1.4177 18 8 2.5294 3.8122 -0.3410 19 6 -0.9624 4.4197 0.1203 20 6 -2.0399 3.9871 0.8714 21 6 -1.8944 2.9289 1.7495 22 6 -0.6714 2.3007 1.8795 23 7 -0.5166 1.1675 2.8193 24 8 -1.4681 0.7891 3.4788 25 8 0.5622 0.6137 2.9331 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0615 -2.9496 32 1 2.3606 2.7501 1.5575 33 1 -1.0795 5.2465 -0.5646 34 1 -2.9974 4.4767 0.7718 35 1 -2.7378 2.5938 2.3349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804614906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:30 Heat of formation + Delta-G solvation = 60.918950 kcal Electronic energy + Delta-G solvation = -25460.228827 eV Core-core repulsion = 21659.885021 eV Total energy + Delta-G solvation = -3800.343806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.27737 -41.65446 -39.57656 -37.08015 -36.10914 -35.56735 -33.16393 -32.55747 -31.34007 -29.94898 -26.93937 -26.48381 -25.64774 -23.13860 -22.29307 -22.18410 -19.94759 -19.62907 -18.52144 -17.92096 -17.70210 -17.58651 -17.26437 -16.84173 -16.29013 -15.76295 -15.10496 -14.76384 -14.14204 -13.28436 -13.14464 -12.93757 -12.70210 -12.52258 -12.21947 -11.37574 -11.20632 -11.07312 -10.94908 -10.88127 -10.81284 -10.72684 -10.67663 -10.57207 -10.26931 -10.17522 -9.98017 -9.76547 -9.21327 -9.04784 -8.59038 -8.01222 -6.12321 -4.12515 -0.35384 0.11499 1.18394 1.37533 1.61039 1.81170 2.89639 3.32525 3.38442 3.42704 3.87944 4.07380 4.29393 4.39613 4.41240 4.55883 4.98300 5.20841 5.25048 5.38588 5.46258 5.73160 5.95677 6.03433 6.26042 6.58515 6.62166 6.74054 6.77422 7.07658 7.17619 7.53518 7.67281 7.84583 8.02345 8.03411 8.11136 8.28088 8.84614 9.46383 10.93712 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.007381 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.486577 B = 3792.826876 C = 4849.820222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.238 3.762 4 H 0.002 0.998 5 C -0.485 4.485 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.885 5.885 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.639 5.639 14 C 0.256 3.744 15 C -0.092 4.092 16 N 0.018 4.982 17 O -0.207 6.207 18 O -0.070 6.070 19 C -0.010 4.010 20 C -0.138 4.138 21 C -0.017 4.017 22 C -0.041 4.041 23 N 0.032 4.968 24 O -0.210 6.210 25 O -0.063 6.063 26 H 0.040 0.960 27 H 0.024 0.976 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.264 0.736 32 H 0.371 0.629 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 6.879 5.574 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.135 3.865 4 H 0.020 0.980 5 C -0.524 4.524 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.732 3.268 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.279 5.279 14 C 0.155 3.845 15 C -0.179 4.179 16 N 0.534 4.466 17 O -0.404 6.404 18 O -0.299 6.299 19 C -0.030 4.030 20 C -0.157 4.157 21 C -0.037 4.037 22 C -0.126 4.126 23 N 0.555 4.445 24 O -0.409 6.409 25 O -0.300 6.300 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.202 0.798 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.894 6.695 5.555 14.736 hybrid contribution 1.268 0.537 -0.815 1.600 sum -10.626 7.232 4.740 13.700 Atomic orbital electron populations 1.22086 1.00719 0.99691 0.98275 1.21713 0.90510 0.99419 1.03532 1.19375 0.96352 0.90131 0.80670 0.98024 1.21075 0.89580 1.36227 1.05470 0.91222 1.24888 0.98860 0.94873 0.95324 1.69863 1.35380 1.37735 1.09444 0.86377 0.84634 0.78573 0.77205 1.20617 1.21334 1.19487 1.58964 0.99738 1.32071 1.37109 1.18712 0.94701 0.85526 0.85597 1.22064 0.89593 1.03239 1.02974 1.43408 1.02230 0.99994 1.00984 1.94478 1.91551 1.27259 1.27089 1.94829 1.08989 1.54783 1.71291 1.21356 0.89426 0.97143 0.95075 1.21049 0.99675 0.97823 0.97138 1.21343 0.95626 0.91994 0.94689 1.20932 0.95795 0.95387 1.00493 1.43145 1.00880 1.00715 0.99758 1.94497 1.32769 1.68779 1.44806 1.94711 1.13267 1.53752 1.68278 0.94131 0.95748 0.94906 0.88241 0.92406 0.92635 0.79816 0.82112 0.82055 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.09 37.16 0.34 -2.79 16 2 C -0.11 -2.67 5.11 -26.73 -0.14 -2.81 16 3 C 0.24 5.60 1.04 -68.86 -0.07 5.53 16 4 H 0.00 0.06 5.75 -51.93 -0.30 -0.24 16 5 C -0.48 -12.38 6.75 -34.44 -0.23 -12.62 16 6 H 0.07 1.74 7.53 -52.49 -0.40 1.35 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 8 N -0.88 -24.30 11.29 55.43 0.63 -23.68 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.64 -12.89 3.80 -53.02 -0.20 -13.09 16 14 C 0.26 4.49 4.34 -83.79 -0.36 4.12 16 15 C -0.09 -1.52 6.31 -79.74 -0.50 -2.02 16 16 N 0.02 0.36 3.91 34.06 0.13 0.50 16 17 O -0.21 -4.07 18.47 -29.46 -0.54 -4.61 16 18 O -0.07 -1.56 12.44 -29.46 -0.37 -1.93 16 19 C -0.01 -0.12 9.55 -39.61 -0.38 -0.50 16 20 C -0.14 -1.24 10.04 -39.55 -0.40 -1.64 16 21 C -0.02 -0.19 9.55 -39.62 -0.38 -0.57 16 22 C -0.04 -0.64 5.10 -79.75 -0.41 -1.05 16 23 N 0.03 0.56 3.39 34.06 0.12 0.67 16 24 O -0.21 -3.56 18.45 -29.46 -0.54 -4.10 16 25 O -0.06 -1.23 15.67 -29.46 -0.46 -1.69 16 26 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.02 0.46 2.28 -51.93 -0.12 0.35 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 30 H 0.06 1.38 8.00 -51.93 -0.42 0.97 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.37 7.35 6.81 -39.29 -0.27 7.08 16 33 H 0.16 1.57 7.63 -52.49 -0.40 1.17 16 34 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.16 1.40 7.61 -52.49 -0.40 1.00 16 LS Contribution 294.67 15.07 4.44 4.44 Total: -1.00 -29.45 294.67 -7.46 -36.90 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.01 Total: 3.56 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.62 Total: -12.75 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.67 Total: -35.60 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.92 Total: -12.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.45 -7.46 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804614906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.820 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds