Wall clock time and date at job start Tue Mar 31 2020 07:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47466 * 2 1 4 4 O 1.45206 * 109.47200 * 119.99978 * 2 1 3 5 5 C 1.34224 * 117.00077 * 269.99945 * 4 2 1 6 6 O 1.20833 * 120.00103 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00302 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.47581 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47581 * 180.02562 * 8 7 5 10 10 H 1.07998 * 119.99778 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00242 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00020 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00050 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47407 * 89.99921 * 13 11 9 15 15 H 1.48499 * 109.47054 * 209.99937 * 13 11 9 16 16 H 1.48507 * 109.47204 * 329.99684 * 13 11 9 17 17 C 1.50701 * 109.47176 * 239.99754 * 2 1 3 18 18 N 1.29030 * 124.91796 * 104.99833 * 17 2 1 19 19 C 1.31780 * 117.12597 * 179.97438 * 18 17 2 20 20 C 1.50696 * 122.74680 * 179.97438 * 19 18 17 21 21 C 1.53006 * 117.49642 * 213.73954 * 20 19 18 22 22 C 1.53004 * 117.49841 * 145.08700 * 20 19 18 23 23 C 1.33639 * 114.49922 * 359.97438 * 19 18 17 24 24 S 1.70980 * 124.91787 * 284.70041 * 17 2 1 25 25 H 1.08997 * 109.46785 * 299.99977 * 1 2 3 26 26 H 1.09002 * 109.47171 * 59.99957 * 1 2 3 27 27 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46972 * 299.99362 * 7 5 4 29 29 H 1.08995 * 109.47473 * 59.99636 * 7 5 4 30 30 H 1.09005 * 109.46903 * 300.00018 * 8 7 5 31 31 H 1.09000 * 109.47608 * 59.99121 * 8 7 5 32 32 H 0.97002 * 119.99990 * 179.97438 * 12 11 9 33 33 H 1.08997 * 115.55315 * 359.41391 * 20 19 18 34 34 H 1.08998 * 117.49721 * 0.02562 * 21 20 19 35 35 H 1.09001 * 117.49500 * 145.01943 * 21 20 19 36 36 H 1.09008 * 117.49495 * 214.97864 * 22 20 19 37 37 H 1.08998 * 117.50080 * 359.96991 * 22 20 19 38 38 H 1.08004 * 126.03783 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0640 2.2811 6 8 1.9983 1.2519 2.2504 7 6 2.7194 -0.5770 3.5491 8 6 2.8633 0.4890 4.6372 9 6 3.3661 -0.1519 5.9050 10 1 3.5629 -1.2134 5.9322 11 6 3.5748 0.6170 7.0303 12 7 4.0132 0.0576 8.1369 13 14 3.2351 2.4532 6.9831 14 1 1.8253 2.7061 7.3752 15 1 4.1443 3.1492 7.9287 16 1 3.4658 2.9641 5.6079 17 6 2.0323 -0.7105 -1.2304 18 7 2.5367 -0.1280 -2.2654 19 6 2.9288 -0.9007 -3.2583 20 6 3.5343 -0.3550 -4.5258 21 6 3.2392 -1.1019 -5.8282 22 6 4.6317 -1.1827 -5.1978 23 6 2.7455 -2.2078 -3.0489 24 16 2.0231 -2.4055 -1.4541 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.0104 -1.3372 3.8774 29 1 3.6884 -1.0400 3.3632 30 1 3.5719 1.2496 4.3092 31 1 1.8940 0.9517 4.8231 32 1 4.1604 0.5986 8.9284 33 1 3.6202 0.7304 -4.5764 34 1 2.6068 -1.9877 -5.7682 35 1 3.1313 -0.5078 -6.7356 36 1 5.4394 -0.6417 -5.6909 37 1 4.9161 -2.1217 -4.7229 38 1 2.9988 -3.0028 -3.7347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813083578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:00 Heat of formation + Delta-G solvation = -44.273096 kcal Electronic energy + Delta-G solvation = -20430.242678 eV Core-core repulsion = 17171.630617 eV Total energy + Delta-G solvation = -3258.612061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82055 -41.12110 -38.28850 -37.53991 -35.64960 -33.92775 -33.22111 -30.36417 -28.49144 -27.13320 -25.25749 -23.67303 -23.25877 -22.17683 -21.59829 -20.33640 -19.32930 -19.28404 -18.30813 -17.54626 -17.39256 -16.67562 -16.30668 -15.91354 -15.84816 -15.23500 -15.09148 -14.86671 -14.52654 -14.09862 -14.06230 -13.61678 -13.43374 -13.22652 -12.95061 -12.56362 -12.43023 -12.26266 -12.21141 -12.07608 -12.02635 -11.80891 -11.72353 -11.52283 -11.42977 -11.39819 -10.79314 -10.78822 -10.48810 -9.64198 -8.31861 -6.35914 -0.49100 0.26979 0.69157 1.12090 1.28878 1.34212 1.36877 1.50085 1.67568 2.34380 2.80634 3.03673 3.05589 3.47429 3.66902 3.83740 3.90718 3.96884 4.11903 4.14856 4.22414 4.27538 4.37709 4.39788 4.58019 4.60902 4.76567 4.84451 4.92737 4.97785 5.05745 5.16023 5.22139 5.22751 5.30463 5.35438 5.57869 6.21062 6.61747 6.64649 6.73962 7.29228 8.83596 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029111 B = 0.002823 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.618367 B = 9916.272634 C = 9950.820535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.092 0.908 4 O -0.349 6.349 5 C 0.473 3.527 6 O -0.533 6.533 7 C -0.089 4.089 8 C 0.001 3.999 9 C -0.530 4.530 10 H 0.053 0.947 11 C 0.015 3.985 12 N -0.942 5.942 13 Si 0.938 3.062 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.259 1.259 17 C 0.018 3.982 18 N -0.487 5.487 19 C 0.083 3.917 20 C -0.113 4.113 21 C -0.150 4.150 22 C -0.158 4.158 23 C -0.258 4.258 24 S 0.205 5.795 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.015 0.985 31 H 0.019 0.981 32 H 0.268 0.732 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -6.424 -29.576 30.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.097 3.903 3 H 0.110 0.890 4 O -0.266 6.266 5 C 0.318 3.682 6 O -0.422 6.422 7 C -0.127 4.127 8 C -0.036 4.036 9 C -0.568 4.568 10 H 0.071 0.929 11 C -0.183 4.183 12 N -0.582 5.582 13 Si 0.762 3.238 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.183 1.183 17 C -0.258 4.258 18 N -0.203 5.203 19 C -0.049 4.049 20 C -0.135 4.135 21 C -0.188 4.188 22 C -0.196 4.196 23 C -0.397 4.397 24 S 0.461 5.539 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.286 -6.323 -28.779 29.935 hybrid contribution 0.428 1.513 -0.139 1.578 sum -4.857 -4.810 -28.918 29.715 Atomic orbital electron populations 1.22185 0.90072 1.04709 1.04390 1.20834 0.96112 0.95430 0.77886 0.88987 1.86559 1.77454 1.42489 1.20093 1.24436 0.72918 0.85696 0.85187 1.90626 1.49152 1.18039 1.84354 1.21378 1.04122 1.00277 0.86897 1.19337 0.96920 0.94707 0.92675 1.21320 1.44115 0.96102 0.95277 0.92890 1.25786 0.94377 1.03142 0.95010 1.70016 1.47455 1.38019 1.02704 0.85842 0.78808 0.80457 0.78710 1.19118 1.20560 1.18335 1.26313 1.04584 0.96866 0.98015 1.65890 1.12632 1.40659 1.01160 1.19666 1.00997 0.89036 0.95187 1.20445 1.05384 0.98862 0.88762 1.23218 0.98724 1.02263 0.94584 1.23220 0.92555 1.01513 1.02308 1.27229 1.09927 1.00997 1.01554 1.83941 1.54569 1.04970 1.10440 0.91039 0.88920 0.89590 0.86172 0.86848 0.96628 0.96275 0.92301 0.87249 0.87500 0.86723 0.86955 0.87829 0.77533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.53 71.98 0.69 -2.71 16 2 C 0.16 4.31 3.08 29.85 0.09 4.40 16 3 H 0.09 2.94 7.16 -2.39 -0.02 2.92 16 4 O -0.35 -10.63 9.71 -51.35 -0.50 -11.13 16 5 C 0.47 17.00 7.93 71.23 0.56 17.57 16 6 O -0.53 -22.20 15.20 21.94 0.33 -21.86 16 7 C -0.09 -3.34 5.75 29.85 0.17 -3.17 16 8 C 0.00 0.06 3.33 29.85 0.10 0.16 16 9 C -0.53 -29.83 9.66 25.60 0.25 -29.59 16 10 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 11 C 0.01 0.87 5.47 84.65 0.46 1.33 16 12 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 13 Si 0.94 45.55 27.47 68.60 1.88 47.43 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.26 -12.40 6.54 99.48 0.65 -11.75 16 17 C 0.02 0.47 6.35 88.52 0.56 1.03 16 18 N -0.49 -13.22 10.53 -179.40 -1.89 -15.11 16 19 C 0.08 1.78 6.50 41.52 0.27 2.05 16 20 C -0.11 -1.88 6.32 -11.54 -0.07 -1.95 16 21 C -0.15 -1.48 9.96 30.62 0.30 -1.18 16 22 C -0.16 -1.72 9.97 30.62 0.31 -1.42 16 23 C -0.26 -4.31 9.91 66.78 0.66 -3.65 16 24 S 0.21 3.96 23.01 -56.49 -1.30 2.66 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.12 4.02 8.14 -2.38 -0.02 4.00 16 29 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 30 H 0.02 0.77 7.15 -2.38 -0.02 0.75 16 31 H 0.02 0.92 7.53 -2.39 -0.02 0.90 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.11 0.86 7.59 -2.39 -0.02 0.84 16 35 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.11 0.98 8.14 -2.38 -0.02 0.97 16 37 H 0.10 1.01 7.66 -2.39 -0.02 0.99 16 38 H 0.21 1.99 7.56 -2.91 -0.02 1.97 16 Total: -1.00 -70.31 340.49 4.19 -66.12 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.00 Total: 6.87 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 4.36 Total: -17.12 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -1.59 Total: -72.97 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.17 Total: -32.99 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.30 Total: 2.66 kcal Total: -70.31 4.19 -66.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813083578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.845 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds