Wall clock time and date at job start Tue Mar 31 2020 07:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47257 * 2 1 4 4 C 1.50699 * 109.47107 * 240.00138 * 2 1 3 5 5 H 1.07998 * 120.00008 * 239.99736 * 4 2 1 6 6 C 1.37876 * 120.00042 * 59.99987 * 4 2 1 7 7 N 1.31511 * 120.00037 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46996 * 270.00198 * 8 6 4 10 10 H 1.48506 * 109.47060 * 30.00124 * 8 6 4 11 11 H 1.48502 * 109.47048 * 149.99967 * 8 6 4 12 12 N 1.46498 * 109.46818 * 120.00046 * 2 1 3 13 13 C 1.46501 * 120.00153 * 60.00118 * 12 2 1 14 14 C 1.34781 * 120.00025 * 239.99909 * 12 2 1 15 15 O 1.21532 * 119.99662 * 6.93384 * 14 12 2 16 16 C 1.48050 * 120.00295 * 186.94112 * 14 12 2 17 17 C 1.39644 * 119.97171 * 20.44062 * 16 14 12 18 18 C 1.37703 * 120.08174 * 179.72663 * 17 16 14 19 19 C 1.39686 * 120.02744 * 0.54923 * 18 17 16 20 20 C 1.47766 * 120.03326 * 179.70191 * 19 18 17 21 21 O 1.21455 * 120.00502 * 180.02562 * 20 19 18 22 22 O 1.34714 * 119.99470 * 0.02562 * 20 19 18 23 23 C 1.39837 * 119.94096 * 359.72211 * 19 18 17 24 24 F 1.35107 * 120.03737 * 179.97438 * 23 19 18 25 25 C 1.38200 * 119.91978 * 0.02562 * 23 19 18 26 26 H 1.08999 * 109.46950 * 60.00094 * 1 2 3 27 27 H 1.08996 * 109.47066 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46813 * 300.00287 * 1 2 3 29 29 H 0.97007 * 119.99932 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46683 * 86.43085 * 13 12 2 31 31 H 1.08999 * 109.46923 * 206.42898 * 13 12 2 32 32 H 1.08993 * 109.46939 * 326.43170 * 13 12 2 33 33 H 1.07998 * 119.95898 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.98979 * 180.25283 * 18 17 16 35 35 H 0.96698 * 116.99505 * 179.97438 * 22 20 19 36 36 H 1.07998 * 120.00953 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0080 9 1 3.6306 -0.5439 -4.4118 10 1 2.4881 -2.5653 -3.7122 11 1 1.3445 -0.9489 -5.1123 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 2.9834 1.1582 1.9589 16 6 3.4126 -0.7705 3.2095 17 6 3.5656 -2.1567 3.1379 18 6 4.1466 -2.8418 4.1816 19 6 4.5736 -2.1522 5.3189 20 6 5.1910 -2.8880 6.4417 21 8 5.5617 -2.2879 7.4305 22 8 5.3429 -4.2246 6.3686 23 6 4.4158 -0.7648 5.3941 24 9 4.8276 -0.0958 6.4933 25 6 3.8371 -0.0788 4.3431 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.7090 1.1615 -3.4844 30 1 2.3806 -2.7376 0.9182 31 1 1.6857 -2.3012 2.4977 32 1 0.6637 -2.2842 1.0405 33 1 3.2315 -2.6916 2.2613 34 1 4.2679 -3.9134 4.1230 35 1 5.7523 -4.6620 7.1275 36 1 3.7149 0.9927 4.3994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827212175.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:27 Heat of formation + Delta-G solvation = -117.287220 kcal Electronic energy + Delta-G solvation = -23365.002047 eV Core-core repulsion = 19537.010679 eV Total energy + Delta-G solvation = -3827.991367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.06578 -40.65372 -39.91696 -37.90287 -36.35263 -35.66469 -33.24583 -31.83325 -31.00577 -29.19231 -26.77450 -25.52814 -25.24560 -23.21024 -22.03739 -21.19464 -19.26050 -18.41608 -17.64898 -17.54144 -16.65322 -16.30253 -16.22383 -15.60987 -15.44012 -15.36712 -14.88663 -14.63854 -14.46886 -13.83979 -13.35987 -13.17902 -13.07661 -12.70607 -12.40947 -12.40197 -11.88100 -11.80659 -11.64337 -11.18050 -11.09918 -10.91381 -10.81371 -10.72819 -10.33986 -10.24706 -9.44785 -9.33076 -9.25827 -8.95258 -8.52084 -7.79293 -6.16172 -4.25339 0.08919 0.92747 2.08331 2.61150 3.02429 3.21887 3.28896 3.29613 3.52137 3.71528 3.95203 4.31202 4.43726 4.58717 4.71828 4.92177 4.99603 5.15381 5.33090 5.51929 5.68556 5.72248 5.80453 5.82570 6.04992 6.10682 6.13679 6.45063 6.66660 6.71990 6.93755 7.24762 7.37011 7.56434 7.60521 7.89850 8.05776 8.31358 8.64637 8.82777 9.41600 10.89131 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.003623 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.010292 B = 7727.250763 C = 8238.587431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.579 5.579 13 C 0.068 3.932 14 C 0.539 3.461 15 O -0.537 6.537 16 C -0.050 4.050 17 C -0.137 4.137 18 C -0.042 4.042 19 C -0.158 4.158 20 C 0.528 3.472 21 O -0.502 6.502 22 O -0.510 6.510 23 C 0.156 3.844 24 F -0.114 7.114 25 C -0.116 4.116 26 H 0.095 0.905 27 H 0.032 0.968 28 H 0.013 0.987 29 H 0.265 0.735 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.171 0.829 34 H 0.152 0.848 35 H 0.416 0.584 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -10.904 13.573 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.309 5.309 13 C -0.075 4.075 14 C 0.325 3.675 15 O -0.416 6.416 16 C -0.054 4.054 17 C -0.155 4.155 18 C -0.060 4.060 19 C -0.161 4.161 20 C 0.371 3.629 21 O -0.391 6.391 22 O -0.322 6.322 23 C 0.136 3.864 24 F -0.092 7.092 25 C -0.136 4.136 26 H 0.114 0.886 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.188 0.812 34 H 0.170 0.830 35 H 0.275 0.725 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.953 -9.762 13.297 16.962 hybrid contribution 0.689 -0.711 -0.165 1.004 sum 4.642 -10.473 13.132 17.427 Atomic orbital electron populations 1.22099 0.97913 0.99531 1.01112 1.19060 0.91209 0.94554 0.79363 0.91644 1.21275 1.32238 1.13228 0.90113 0.92130 1.24890 0.94817 0.94949 0.99020 1.69875 1.36045 1.22487 1.23954 0.86467 0.78692 0.79826 0.82239 1.20557 1.19856 1.21080 1.48198 1.47840 1.11784 1.23068 1.22238 1.01991 0.83280 0.99966 1.18127 0.80255 0.86920 0.82162 1.90763 1.61802 1.14225 1.74789 1.20418 0.96580 0.93919 0.94460 1.22544 0.98383 0.93664 1.00884 1.21349 0.93127 1.00961 0.90591 1.19187 1.08887 0.91708 0.96271 1.20619 0.75775 0.80502 0.85980 1.90952 1.46625 1.69088 1.32393 1.84534 1.76276 1.21693 1.49675 1.17483 0.96458 0.88200 0.84257 1.91607 1.87225 1.79908 1.50486 1.21224 0.98856 1.02123 0.91375 0.88619 0.94943 0.96768 0.92539 0.92105 0.91317 0.90557 0.81214 0.82996 0.72536 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.94 37.16 0.33 -3.02 16 2 C 0.26 6.21 2.63 -69.08 -0.18 6.03 16 3 H 0.07 1.85 6.92 -51.93 -0.36 1.49 16 4 C -0.53 -13.51 8.37 -34.44 -0.29 -13.80 16 5 H 0.06 1.50 7.55 -52.49 -0.40 1.10 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.14 11.32 55.43 0.63 -23.52 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.58 -11.39 2.75 -176.30 -0.49 -11.87 16 13 C 0.07 0.99 7.91 59.85 0.47 1.47 16 14 C 0.54 10.57 7.52 -12.23 -0.09 10.47 16 15 O -0.54 -12.61 15.87 5.34 0.08 -12.53 16 16 C -0.05 -0.75 5.57 -104.91 -0.58 -1.34 16 17 C -0.14 -1.60 7.59 -39.25 -0.30 -1.89 16 18 C -0.04 -0.42 9.60 -39.24 -0.38 -0.80 16 19 C -0.16 -1.88 5.88 -104.86 -0.62 -2.50 16 20 C 0.53 6.02 8.27 34.63 0.29 6.31 16 21 O -0.50 -7.28 16.11 -19.23 -0.31 -7.59 16 22 O -0.51 -3.83 12.67 -40.53 -0.51 -4.34 16 23 C 0.16 2.12 7.28 -39.00 -0.28 1.83 16 24 F -0.11 -1.70 15.53 2.25 0.03 -1.66 16 25 C -0.12 -1.66 9.55 -39.16 -0.37 -2.03 16 26 H 0.10 2.40 6.07 -51.93 -0.32 2.09 16 27 H 0.03 0.66 6.68 -51.93 -0.35 0.32 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 30 H 0.06 0.81 6.88 -51.93 -0.36 0.45 16 31 H 0.07 0.78 5.26 -51.93 -0.27 0.51 16 32 H 0.08 1.12 6.44 -51.93 -0.33 0.79 16 33 H 0.17 1.78 4.02 -52.49 -0.21 1.57 16 34 H 0.15 1.09 7.60 -52.49 -0.40 0.69 16 35 H 0.42 1.24 9.11 45.56 0.42 1.65 16 36 H 0.16 2.24 7.78 -52.49 -0.41 1.84 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -32.33 310.28 -5.55 -37.88 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -2.54 Total: 1.46 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.10 Total: 2.37 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.14 Total: -35.39 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.74 Total: -24.46 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.03 Total: -1.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.33 -5.55 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827212175.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.412 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds