Wall clock time and date at job start Tue Mar 31 2020 07:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81001 * 109.46583 * 2 1 4 4 C 1.76199 * 99.99743 * 179.97438 * 3 2 1 5 5 C 1.39697 * 120.57654 * 0.02562 * 4 3 2 6 6 C 1.38141 * 118.42224 * 180.02562 * 5 4 3 7 7 C 1.38899 * 119.49687 * 0.27659 * 6 5 4 8 8 N 1.31303 * 121.14732 * 359.41815 * 7 6 5 9 9 C 1.32946 * 121.72110 * 0.59593 * 8 7 6 10 10 C 1.47540 * 119.82044 * 179.68070 * 9 8 7 11 11 O 1.21492 * 119.99812 * 180.02562 * 10 9 8 12 12 O 1.34754 * 119.99916 * 0.02562 * 10 9 8 13 13 C 1.45199 * 117.00006 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47000 * 330.00369 * 13 12 10 15 15 C 1.50704 * 109.47195 * 210.00454 * 13 12 10 16 16 H 1.08000 * 120.00149 * 0.02562 * 15 13 12 17 17 C 1.37874 * 119.99892 * 179.97438 * 15 13 12 18 18 N 1.31518 * 119.99946 * 179.97438 * 17 15 13 19 19 Si 1.86804 * 119.99973 * 0.02562 * 17 15 13 20 20 H 1.48495 * 109.47504 * 89.99798 * 19 17 15 21 21 H 1.48504 * 109.46667 * 209.99829 * 19 17 15 22 22 H 1.48497 * 109.46979 * 329.99265 * 19 17 15 23 23 C 1.53003 * 109.47174 * 90.00527 * 13 12 10 24 24 C 1.53005 * 109.46692 * 294.99928 * 23 13 12 25 25 H 1.08997 * 109.47293 * 60.00142 * 1 2 3 26 26 H 1.09005 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47157 * 299.99254 * 1 2 3 28 28 H 1.09000 * 109.46666 * 240.00554 * 2 1 3 29 29 H 1.08997 * 109.47293 * 119.99858 * 2 1 3 30 30 H 1.07998 * 120.78807 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.24773 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.42219 * 179.72244 * 7 6 5 33 33 H 0.96999 * 119.99983 * 180.02562 * 18 17 15 34 34 H 1.08996 * 109.46689 * 54.99919 * 23 13 12 35 35 H 1.08995 * 109.47059 * 175.00497 * 23 13 12 36 36 H 1.08997 * 109.47417 * 300.00241 * 24 23 13 37 37 H 1.09005 * 109.46860 * 60.00496 * 24 23 13 38 38 H 1.08997 * 109.46627 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1332 1.7066 0.0000 4 6 3.8712 1.4167 0.0008 5 6 4.3743 0.1135 0.0006 6 6 5.7445 -0.0624 0.0018 7 6 6.5767 1.0496 0.0089 8 7 6.0840 2.2667 0.0031 9 6 4.7735 2.4903 0.0020 10 6 4.2655 3.8755 0.0026 11 8 3.0686 4.0835 0.0021 12 8 5.1292 4.9098 0.0037 13 6 4.5587 6.2450 0.0047 14 1 3.5975 6.2298 -0.5093 15 6 5.4929 7.1911 -0.7048 16 1 6.4222 6.8254 -1.1158 17 6 5.1606 8.5233 -0.8301 18 7 5.9761 9.3490 -1.4488 19 14 3.5528 9.1557 -0.1198 20 1 3.7704 9.5979 1.2810 21 1 3.0701 10.3019 -0.9314 22 1 2.5398 8.0702 -0.1446 23 6 4.3581 6.7128 1.4476 24 6 3.3148 5.8262 2.1307 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.7079 -0.7364 0.0005 31 1 6.1653 -1.0571 0.0022 32 1 7.6477 0.9107 0.0144 33 1 5.7425 10.2864 -1.5367 34 1 5.3029 6.6434 1.9866 35 1 4.0136 7.7469 1.4497 36 1 2.3701 5.8955 1.5916 37 1 3.6594 4.7921 2.1286 38 1 3.1723 6.1592 3.1588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:06 Heat of formation + Delta-G solvation = -43.726675 kcal Electronic energy + Delta-G solvation = -21608.684080 eV Core-core repulsion = 18350.095713 eV Total energy + Delta-G solvation = -3258.588367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51072 -39.23371 -36.09011 -33.67751 -33.42303 -32.44345 -31.91551 -31.49509 -27.83144 -25.48588 -23.85778 -23.74872 -22.70394 -21.38128 -19.92655 -18.16184 -17.50665 -16.79504 -16.54915 -16.09072 -15.67059 -15.53321 -15.10016 -14.83881 -14.52437 -13.92858 -13.69474 -13.40630 -13.05868 -12.73099 -12.44089 -12.37981 -11.95861 -11.86305 -11.82374 -11.63834 -11.43578 -11.22268 -10.85064 -10.70908 -10.55812 -9.99486 -9.74163 -9.70172 -9.62084 -9.56710 -9.27007 -9.02705 -8.61105 -7.53381 -6.17911 -4.19826 0.45500 0.95596 1.42527 2.25902 2.77647 3.21953 3.24751 3.34002 3.37101 3.78530 4.30458 4.31832 4.52618 4.61425 4.63553 4.73161 4.85836 5.10894 5.11160 5.15930 5.33261 5.42517 5.50310 5.67587 5.76627 5.80375 5.86002 5.95978 6.02508 6.31782 6.46823 6.60503 6.70072 6.77119 7.05748 7.34906 7.52886 7.71527 8.23766 8.59286 8.91313 9.38906 10.94189 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.004878 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.708439 B = 5738.680773 C = 6707.939853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.177 4.177 3 S 0.030 5.970 4 C -0.102 4.102 5 C -0.106 4.106 6 C -0.127 4.127 7 C 0.084 3.916 8 N -0.408 5.408 9 C 0.107 3.893 10 C 0.506 3.494 11 O -0.485 6.485 12 O -0.311 6.311 13 C 0.194 3.806 14 H 0.048 0.952 15 C -0.523 4.523 16 H 0.088 0.912 17 C 0.080 3.920 18 N -0.888 5.888 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.260 1.260 23 C -0.148 4.148 24 C -0.149 4.149 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.167 0.833 33 H 0.269 0.731 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.438 -21.845 4.581 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.325 4.325 3 S 0.276 5.724 4 C -0.219 4.219 5 C -0.138 4.138 6 C -0.149 4.149 7 C -0.080 4.080 8 N -0.119 5.119 9 C -0.036 4.036 10 C 0.348 3.652 11 O -0.375 6.375 12 O -0.224 6.224 13 C 0.140 3.860 14 H 0.066 0.934 15 C -0.560 4.560 16 H 0.106 0.894 17 C -0.123 4.123 18 N -0.525 5.525 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.217 1.217 22 H -0.184 1.184 23 C -0.185 4.185 24 C -0.207 4.207 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.046 -19.738 4.507 21.437 hybrid contribution -0.452 -1.459 0.386 1.575 sum -7.498 -21.197 4.893 23.010 Atomic orbital electron populations 1.21434 0.91955 1.02518 1.03330 1.24112 1.01340 1.02017 1.05016 1.87401 0.92774 1.03752 1.88453 1.23164 1.00595 0.96134 1.01976 1.21557 0.96470 0.94959 1.00793 1.22312 0.93650 1.01015 0.97893 1.22955 1.01007 0.86843 0.97234 1.67796 1.12559 1.24722 1.06788 1.20005 0.88952 0.91049 1.03642 1.20468 0.84887 0.85865 0.73970 1.90721 1.16201 1.84224 1.46353 1.86706 1.38651 1.16340 1.80730 1.21080 0.96340 0.75268 0.93271 0.93430 1.20794 1.07045 0.91877 1.36305 0.89352 1.24719 0.96758 0.96066 0.94711 1.69840 1.36363 1.04542 1.41791 0.87016 0.84677 0.79096 0.78771 1.19925 1.21709 1.18415 1.22366 0.99016 0.98984 0.98173 1.21896 0.99930 0.99481 0.99356 0.91570 0.91313 0.91613 0.89711 0.89755 0.83876 0.83911 0.81628 0.92105 0.91135 0.91731 0.92395 0.93704 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 9.92 37.16 0.37 -0.67 16 2 C -0.18 -1.57 4.90 37.16 0.18 -1.39 16 3 S 0.03 0.42 18.97 -107.50 -2.04 -1.62 16 4 C -0.10 -1.49 6.17 -38.29 -0.24 -1.72 16 5 C -0.11 -1.12 9.27 -39.07 -0.36 -1.48 16 6 C -0.13 -1.18 10.10 -39.37 -0.40 -1.58 16 7 C 0.08 1.01 11.17 -17.53 -0.20 0.81 16 8 N -0.41 -6.98 10.11 -9.67 -0.10 -7.08 16 9 C 0.11 1.93 6.76 -82.84 -0.56 1.37 16 10 C 0.51 10.91 6.37 34.52 0.22 11.13 16 11 O -0.48 -10.58 10.93 -19.26 -0.21 -10.79 16 12 O -0.31 -7.63 9.62 -40.64 -0.39 -8.02 16 13 C 0.19 5.03 1.84 -27.88 -0.05 4.98 16 14 H 0.05 1.28 6.22 -51.93 -0.32 0.96 16 15 C -0.52 -15.38 9.48 -34.44 -0.33 -15.71 16 16 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 17 C 0.08 2.35 5.45 -17.82 -0.10 2.25 16 18 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 19 Si 0.88 21.90 24.41 -169.99 -4.15 17.75 16 20 H -0.27 -6.54 6.83 56.52 0.39 -6.15 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.26 -6.35 6.53 56.52 0.37 -5.99 16 23 C -0.15 -3.45 5.15 -26.73 -0.14 -3.59 16 24 C -0.15 -3.03 8.56 37.16 0.32 -2.71 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.66 7.57 -51.92 -0.39 0.26 16 29 H 0.08 0.64 7.57 -51.92 -0.39 0.25 16 30 H 0.14 1.07 5.66 -52.49 -0.30 0.77 16 31 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.06 1.54 3.22 -51.93 -0.17 1.38 16 36 H 0.06 1.20 7.79 -51.93 -0.40 0.79 16 37 H 0.04 0.90 6.06 -51.93 -0.31 0.59 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -33.35 320.90 -7.41 -40.77 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.86 Total: -1.16 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.28 Total: -8.30 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.68 Total: -33.46 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.60 Total: -18.81 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.15 Total: 17.75 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.04 Total: -1.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.35 -7.41 -40.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.959 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds