Wall clock time and date at job start Tue Mar 31 2020 07:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81001 * 109.46583 * 2 1 4 4 C 1.76199 * 99.99743 * 179.97438 * 3 2 1 5 5 C 1.39697 * 120.57654 * 0.02562 * 4 3 2 6 6 C 1.38141 * 118.42224 * 180.02562 * 5 4 3 7 7 C 1.38899 * 119.49687 * 0.27659 * 6 5 4 8 8 N 1.31303 * 121.14732 * 359.41815 * 7 6 5 9 9 C 1.32946 * 121.72110 * 0.59593 * 8 7 6 10 10 C 1.47540 * 119.82044 * 179.68070 * 9 8 7 11 11 O 1.21492 * 119.99812 * 180.02562 * 10 9 8 12 12 O 1.34754 * 119.99916 * 0.02562 * 10 9 8 13 13 C 1.45199 * 117.00006 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47000 * 330.00369 * 13 12 10 15 15 C 1.50704 * 109.47195 * 210.00454 * 13 12 10 16 16 H 1.08000 * 120.00149 * 0.02562 * 15 13 12 17 17 C 1.37874 * 119.99892 * 179.97438 * 15 13 12 18 18 N 1.31518 * 119.99946 * 179.97438 * 17 15 13 19 19 Si 1.86804 * 119.99973 * 0.02562 * 17 15 13 20 20 H 1.48495 * 109.47504 * 89.99798 * 19 17 15 21 21 H 1.48504 * 109.46667 * 209.99829 * 19 17 15 22 22 H 1.48497 * 109.46979 * 329.99265 * 19 17 15 23 23 C 1.53003 * 109.47174 * 90.00527 * 13 12 10 24 24 C 1.53005 * 109.46692 * 294.99928 * 23 13 12 25 25 H 1.08997 * 109.47293 * 60.00142 * 1 2 3 26 26 H 1.09005 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47157 * 299.99254 * 1 2 3 28 28 H 1.09000 * 109.46666 * 240.00554 * 2 1 3 29 29 H 1.08997 * 109.47293 * 119.99858 * 2 1 3 30 30 H 1.07998 * 120.78807 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.24773 * 179.97438 * 6 5 4 32 32 H 1.07997 * 119.42219 * 179.72244 * 7 6 5 33 33 H 0.96999 * 119.99983 * 180.02562 * 18 17 15 34 34 H 1.08996 * 109.46689 * 54.99919 * 23 13 12 35 35 H 1.08995 * 109.47059 * 175.00497 * 23 13 12 36 36 H 1.08997 * 109.47417 * 300.00241 * 24 23 13 37 37 H 1.09005 * 109.46860 * 60.00496 * 24 23 13 38 38 H 1.08997 * 109.46627 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1332 1.7066 0.0000 4 6 3.8712 1.4167 0.0008 5 6 4.3743 0.1135 0.0006 6 6 5.7445 -0.0624 0.0018 7 6 6.5767 1.0496 0.0089 8 7 6.0840 2.2667 0.0031 9 6 4.7735 2.4903 0.0020 10 6 4.2655 3.8755 0.0026 11 8 3.0686 4.0835 0.0021 12 8 5.1292 4.9098 0.0037 13 6 4.5587 6.2450 0.0047 14 1 3.5975 6.2298 -0.5093 15 6 5.4929 7.1911 -0.7048 16 1 6.4222 6.8254 -1.1158 17 6 5.1606 8.5233 -0.8301 18 7 5.9761 9.3490 -1.4488 19 14 3.5528 9.1557 -0.1198 20 1 3.7704 9.5979 1.2810 21 1 3.0701 10.3019 -0.9314 22 1 2.5398 8.0702 -0.1446 23 6 4.3581 6.7128 1.4476 24 6 3.3148 5.8262 2.1307 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.7079 -0.7364 0.0005 31 1 6.1653 -1.0571 0.0022 32 1 7.6477 0.9107 0.0144 33 1 5.7425 10.2864 -1.5367 34 1 5.3029 6.6434 1.9866 35 1 4.0136 7.7469 1.4497 36 1 2.3701 5.8955 1.5916 37 1 3.6594 4.7921 2.1286 38 1 3.1723 6.1592 3.1588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835340028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:05 Heat of formation + Delta-G solvation = -65.875389 kcal Electronic energy + Delta-G solvation = -21609.644520 eV Core-core repulsion = 18350.095713 eV Total energy + Delta-G solvation = -3259.548807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84175 -40.60739 -37.83286 -35.56000 -34.34475 -33.95204 -33.25990 -32.58546 -29.83149 -26.69233 -24.99436 -24.76377 -24.34238 -22.85777 -21.64029 -19.71445 -18.69194 -18.58188 -18.02490 -17.55328 -17.14142 -16.74056 -16.30855 -15.81424 -15.62550 -15.38958 -14.98976 -14.87896 -14.56842 -14.07452 -13.93635 -13.76802 -13.46604 -13.23395 -13.15679 -13.09636 -12.61827 -12.54043 -12.49302 -12.18448 -12.03314 -11.56190 -11.51880 -11.45170 -11.18043 -10.79407 -10.73647 -10.64130 -10.42929 -8.59616 -8.45949 -6.54984 -0.63908 0.04976 0.45053 1.21753 1.29272 1.38296 1.40052 1.41066 1.79783 2.18654 2.66754 2.85623 3.21170 3.64428 3.74153 3.86298 4.01031 4.04439 4.06012 4.12937 4.14753 4.28857 4.42985 4.51133 4.54499 4.73963 4.85483 4.88820 4.89509 4.91951 4.94091 5.00682 5.22860 5.27942 5.31401 5.47278 5.57797 6.09185 6.47797 6.62834 6.92742 7.09746 8.70471 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.004878 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.708439 B = 5738.680773 C = 6707.939853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.153 4.153 3 S -0.048 6.048 4 C -0.095 4.095 5 C -0.101 4.101 6 C -0.093 4.093 7 C 0.077 3.923 8 N -0.456 5.456 9 C 0.059 3.941 10 C 0.496 3.504 11 O -0.498 6.498 12 O -0.336 6.336 13 C 0.200 3.800 14 H 0.033 0.967 15 C -0.542 4.542 16 H 0.040 0.960 17 C 0.032 3.968 18 N -0.930 5.930 19 Si 0.939 3.061 20 H -0.248 1.248 21 H -0.280 1.280 22 H -0.254 1.254 23 C -0.144 4.144 24 C -0.138 4.138 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.184 0.816 31 H 0.200 0.800 32 H 0.197 0.803 33 H 0.276 0.724 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 -25.561 6.006 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.301 4.301 3 S 0.199 5.801 4 C -0.212 4.212 5 C -0.132 4.132 6 C -0.114 4.114 7 C -0.089 4.089 8 N -0.168 5.168 9 C -0.082 4.082 10 C 0.340 3.660 11 O -0.388 6.388 12 O -0.251 6.251 13 C 0.145 3.855 14 H 0.050 0.950 15 C -0.580 4.580 16 H 0.059 0.941 17 C -0.168 4.168 18 N -0.568 5.568 19 Si 0.764 3.236 20 H -0.173 1.173 21 H -0.207 1.207 22 H -0.178 1.178 23 C -0.182 4.182 24 C -0.195 4.195 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.201 0.799 31 H 0.217 0.783 32 H 0.214 0.786 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.454 -23.465 5.938 25.638 hybrid contribution 0.086 -0.588 -0.141 0.611 sum -8.368 -24.053 5.798 26.119 Atomic orbital electron populations 1.21490 0.91178 1.04061 1.02633 1.24139 1.01661 0.97367 1.06915 1.87580 0.94057 1.10046 1.88464 1.23242 0.99697 0.96852 1.01402 1.22125 0.97831 0.94079 0.99187 1.22911 0.92697 1.02512 0.93308 1.23655 1.03004 0.86133 0.96092 1.67646 1.12543 1.27947 1.08631 1.19600 0.90291 0.89603 1.08734 1.21222 0.84709 0.86674 0.73352 1.90705 1.16361 1.84952 1.46781 1.86677 1.40023 1.16467 1.81965 1.20740 0.94300 0.75982 0.94436 0.94968 1.20956 1.06203 0.93428 1.37364 0.94131 1.25576 1.00600 0.95893 0.94699 1.69966 1.38637 1.05258 1.42986 0.85987 0.79745 0.78662 0.79240 1.17345 1.20676 1.17812 1.22254 1.00059 0.99357 0.96519 1.21781 0.98327 0.98578 1.00790 0.92482 0.88358 0.92292 0.87796 0.87588 0.79862 0.78287 0.78619 0.91459 0.91298 0.91873 0.92930 0.94202 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.92 71.98 0.71 -0.99 16 2 C -0.15 -2.18 4.90 71.98 0.35 -1.83 16 3 S -0.05 -1.33 18.97 -56.49 -1.07 -2.41 16 4 C -0.09 -2.67 6.17 23.11 0.14 -2.52 16 5 C -0.10 -1.71 9.27 22.60 0.21 -1.50 16 6 C -0.09 -1.26 10.10 22.41 0.23 -1.04 16 7 C 0.08 1.65 11.17 84.93 0.95 2.60 16 8 N -0.46 -15.86 10.11 -184.51 -1.87 -17.72 16 9 C 0.06 2.18 6.76 41.92 0.28 2.46 16 10 C 0.50 22.70 6.37 70.28 0.45 23.15 16 11 O -0.50 -22.87 10.93 19.86 0.22 -22.65 16 12 O -0.34 -17.72 9.62 -56.64 -0.54 -18.26 16 13 C 0.20 10.89 1.84 29.85 0.06 10.95 16 14 H 0.03 1.84 6.22 -2.38 -0.01 1.82 16 15 C -0.54 -33.99 9.48 25.60 0.24 -33.74 16 16 H 0.04 2.83 8.06 -2.91 -0.02 2.81 16 17 C 0.03 1.94 5.45 84.65 0.46 2.40 16 18 N -0.93 -59.09 13.96 21.45 0.30 -58.79 16 19 Si 0.94 45.81 24.41 68.60 1.67 47.49 16 20 H -0.25 -11.13 6.83 99.48 0.68 -10.45 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.25 -12.10 6.53 99.48 0.65 -11.45 16 23 C -0.14 -6.85 5.15 30.60 0.16 -6.69 16 24 C -0.14 -5.54 8.56 71.98 0.62 -4.92 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 1.13 7.57 -2.40 -0.02 1.11 16 29 H 0.11 1.10 7.57 -2.40 -0.02 1.08 16 30 H 0.18 1.58 5.66 -2.91 -0.02 1.56 16 31 H 0.20 0.54 8.06 -2.91 -0.02 0.51 16 32 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.28 16.09 8.31 -92.71 -0.77 15.31 16 34 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.06 2.98 3.22 -2.39 -0.01 2.97 16 36 H 0.05 2.15 7.79 -2.39 -0.02 2.14 16 37 H 0.04 1.62 6.06 -2.38 -0.01 1.61 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -81.20 320.90 4.56 -76.65 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.99 Total: 7.38 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 4.86 Total: -11.68 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.57 Total: -76.51 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.33 Total: -40.91 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.49 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -1.07 Total: -2.41 kcal Total: -81.20 4.56 -76.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.772 kcal (2) G-P(sol) polarization free energy of solvation -81.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds