Wall clock time and date at job start Tue Mar 31 2020 07:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81008 * 109.47004 * 2 1 4 4 C 1.76198 * 100.00118 * 180.02562 * 3 2 1 5 5 C 1.39699 * 120.57589 * 0.25626 * 4 3 2 6 6 C 1.38129 * 118.42106 * 180.26090 * 5 4 3 7 7 C 1.38913 * 119.49632 * 359.47923 * 6 5 4 8 8 N 1.31302 * 121.15088 * 0.28052 * 7 6 5 9 9 C 1.32944 * 121.71365 * 359.97438 * 8 7 6 10 10 C 1.47534 * 119.81590 * 179.97438 * 9 8 7 11 11 O 1.21502 * 120.00226 * 179.97438 * 10 9 8 12 12 O 1.34757 * 120.00079 * 0.02562 * 10 9 8 13 13 C 1.45203 * 117.00219 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.46807 * 29.99758 * 13 12 10 15 15 C 1.50699 * 109.47027 * 150.00431 * 13 12 10 16 16 H 1.08001 * 120.00289 * 359.97438 * 15 13 12 17 17 C 1.37877 * 119.99824 * 180.02562 * 15 13 12 18 18 N 1.31512 * 120.00020 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99964 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47506 * 89.99418 * 19 17 15 21 21 H 1.48496 * 109.47178 * 209.99880 * 19 17 15 22 22 H 1.48505 * 109.46812 * 329.99469 * 19 17 15 23 23 C 1.52998 * 109.46987 * 269.99983 * 13 12 10 24 24 C 1.52996 * 109.47272 * 65.00058 * 23 13 12 25 25 H 1.09007 * 109.47331 * 299.99866 * 1 2 3 26 26 H 1.08998 * 109.47510 * 60.00287 * 1 2 3 27 27 H 1.09006 * 109.46984 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47224 * 240.00582 * 2 1 3 29 29 H 1.08998 * 109.47510 * 119.99713 * 2 1 3 30 30 H 1.08002 * 120.78798 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.25431 * 179.76465 * 6 5 4 32 32 H 1.08003 * 119.42107 * 180.25166 * 7 6 5 33 33 H 0.97003 * 119.99894 * 180.02562 * 18 17 15 34 34 H 1.09002 * 109.47358 * 185.00091 * 23 13 12 35 35 H 1.09006 * 109.47589 * 304.99722 * 23 13 12 36 36 H 1.09001 * 109.47151 * 179.97438 * 24 23 13 37 37 H 1.09002 * 109.47201 * 299.99785 * 24 23 13 38 38 H 1.09001 * 109.47428 * 59.99677 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7066 0.0000 4 6 3.8713 1.4167 -0.0008 5 6 4.3743 0.1135 -0.0066 6 6 5.7444 -0.0624 -0.0014 7 6 6.5767 1.0497 -0.0017 8 7 6.0841 2.2668 -0.0013 9 6 4.7735 2.4903 -0.0011 10 6 4.2656 3.8754 -0.0001 11 8 3.0685 4.0835 -0.0004 12 8 5.1292 4.9098 0.0001 13 6 4.5587 6.2451 0.0006 14 1 3.5976 6.2292 0.5144 15 6 5.4929 7.1903 0.7111 16 1 6.4223 6.8241 1.1216 17 6 5.1606 8.5224 0.8379 18 7 4.0287 8.9682 0.3384 19 14 6.3183 9.6940 1.7192 20 1 7.2688 10.2803 0.7406 21 1 5.5321 10.7801 2.3574 22 1 7.0744 8.9527 2.7605 23 6 4.3581 6.7144 -1.4418 24 6 3.3150 5.8287 -2.1260 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7079 -0.7364 -0.0102 31 1 6.1653 -1.0570 -0.0018 32 1 7.6478 0.9108 -0.0018 33 1 3.7951 9.9055 0.4273 34 1 4.0136 7.7486 -1.4428 35 1 5.3030 6.6458 -1.9810 36 1 3.1718 6.1634 -3.1534 37 1 3.6595 4.7946 -2.1250 38 1 2.3701 5.8974 -1.5868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:08 Heat of formation + Delta-G solvation = -53.503543 kcal Electronic energy + Delta-G solvation = -21513.551326 eV Core-core repulsion = 18254.539003 eV Total energy + Delta-G solvation = -3259.012323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38440 -39.02954 -35.82602 -33.57072 -33.34946 -32.37788 -31.59854 -31.15279 -27.31234 -25.35281 -23.79470 -23.69923 -22.92322 -21.01918 -19.60045 -17.94368 -17.39381 -16.76117 -16.31164 -15.83793 -15.47412 -15.34688 -14.98227 -14.70671 -14.43058 -13.84867 -13.65785 -13.12016 -12.80498 -12.72077 -12.36386 -12.06614 -11.75794 -11.74391 -11.42472 -11.28307 -11.15189 -10.93312 -10.70638 -10.58950 -10.48452 -10.19653 -9.71823 -9.65454 -9.61536 -9.35770 -9.15874 -8.75399 -8.40016 -7.44614 -6.13038 -4.19215 0.54384 1.02245 1.50973 2.34649 2.91884 3.29290 3.33203 3.36451 3.47872 3.89294 4.33545 4.43429 4.58825 4.67896 4.70363 4.80752 4.98226 5.17278 5.19068 5.22405 5.44099 5.48618 5.56840 5.81973 5.86560 5.88868 6.28489 6.35085 6.39698 6.51659 6.91524 7.00316 7.21939 7.25239 7.64686 7.76583 7.79178 7.97404 8.20644 8.63479 8.93424 9.45348 10.93869 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.004453 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.067543 B = 6286.639953 C = 7121.565238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.179 4.179 3 S 0.034 5.966 4 C -0.104 4.104 5 C -0.106 4.106 6 C -0.129 4.129 7 C 0.082 3.918 8 N -0.410 5.410 9 C 0.109 3.891 10 C 0.504 3.496 11 O -0.483 6.483 12 O -0.326 6.326 13 C 0.219 3.781 14 H 0.049 0.951 15 C -0.518 4.518 16 H 0.070 0.930 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.911 3.089 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.136 4.136 24 C -0.142 4.142 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.266 0.734 34 H 0.110 0.890 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -19.967 -1.771 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.327 4.327 3 S 0.280 5.720 4 C -0.220 4.220 5 C -0.138 4.138 6 C -0.151 4.151 7 C -0.082 4.082 8 N -0.120 5.120 9 C -0.035 4.035 10 C 0.346 3.654 11 O -0.373 6.373 12 O -0.240 6.240 13 C 0.166 3.834 14 H 0.067 0.933 15 C -0.556 4.556 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.738 3.262 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.174 4.174 24 C -0.200 4.200 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.182 0.818 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.793 -17.877 -1.783 18.181 hybrid contribution 0.827 -1.338 0.366 1.615 sum -1.966 -19.215 -1.417 19.367 Atomic orbital electron populations 1.21428 0.91985 1.02443 1.03357 1.24121 1.01341 1.02287 1.04917 1.87476 0.92699 1.03387 1.88400 1.23187 1.00705 0.96136 1.02020 1.21547 0.96437 0.94980 1.00844 1.22285 0.93677 1.00932 0.98227 1.22937 1.00910 0.86938 0.97447 1.67799 1.12701 1.24613 1.06924 1.20139 0.88838 0.91396 1.03099 1.20391 0.84975 0.85760 0.74238 1.90723 1.16196 1.84153 1.46246 1.86677 1.39431 1.17340 1.80556 1.20784 0.95747 0.72527 0.94314 0.93346 1.21048 1.05999 0.92424 1.36169 0.91214 1.24866 0.95651 0.97746 0.95618 1.69892 1.22152 1.15702 1.44923 0.86284 0.80273 0.79969 0.79692 1.20368 1.21019 1.19619 1.22025 0.96856 1.02678 0.95799 1.21857 1.00496 0.98716 0.98903 0.91576 0.91589 0.91386 0.89821 0.89801 0.83946 0.84027 0.81781 0.92448 0.87243 0.93910 0.94794 0.95078 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.92 37.16 0.37 -0.75 16 2 C -0.18 -1.71 4.90 37.16 0.18 -1.53 16 3 S 0.03 0.51 18.97 -107.50 -2.04 -1.53 16 4 C -0.10 -1.60 6.17 -38.29 -0.24 -1.83 16 5 C -0.11 -1.19 9.27 -39.08 -0.36 -1.55 16 6 C -0.13 -1.28 10.10 -39.37 -0.40 -1.67 16 7 C 0.08 1.03 11.17 -17.53 -0.20 0.83 16 8 N -0.41 -7.25 10.11 -9.67 -0.10 -7.35 16 9 C 0.11 2.06 6.76 -82.85 -0.56 1.50 16 10 C 0.50 11.46 6.38 34.52 0.22 11.68 16 11 O -0.48 -11.24 10.93 -19.27 -0.21 -11.45 16 12 O -0.33 -8.34 9.62 -40.65 -0.39 -8.73 16 13 C 0.22 6.00 2.25 -27.88 -0.06 5.93 16 14 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 15 C -0.52 -14.93 8.90 -34.44 -0.31 -15.23 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 18 N -0.89 -25.39 11.29 55.43 0.63 -24.76 16 19 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.14 -3.47 5.49 -26.73 -0.15 -3.62 16 24 C -0.14 -3.22 8.56 37.16 0.32 -2.90 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.70 7.56 -51.92 -0.39 0.30 16 29 H 0.08 0.70 7.58 -51.92 -0.39 0.31 16 30 H 0.14 1.15 5.66 -52.49 -0.30 0.86 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.17 1.47 8.06 -52.48 -0.42 1.04 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 35 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 38 H 0.05 1.28 7.79 -51.93 -0.40 0.88 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -32.07 327.66 -8.46 -40.52 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.99 Total: -0.62 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.27 Total: -7.49 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.53 Total: -32.10 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.60 Total: -20.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.04 Total: -1.53 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.07 -8.46 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.979 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds