Wall clock time and date at job start Tue Mar 31 2020 07:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81008 * 109.47004 * 2 1 4 4 C 1.76198 * 100.00118 * 180.02562 * 3 2 1 5 5 C 1.39699 * 120.57589 * 0.25626 * 4 3 2 6 6 C 1.38129 * 118.42106 * 180.26090 * 5 4 3 7 7 C 1.38913 * 119.49632 * 359.47923 * 6 5 4 8 8 N 1.31302 * 121.15088 * 0.28052 * 7 6 5 9 9 C 1.32944 * 121.71365 * 359.97438 * 8 7 6 10 10 C 1.47534 * 119.81590 * 179.97438 * 9 8 7 11 11 O 1.21502 * 120.00226 * 179.97438 * 10 9 8 12 12 O 1.34757 * 120.00079 * 0.02562 * 10 9 8 13 13 C 1.45203 * 117.00219 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.46807 * 29.99758 * 13 12 10 15 15 C 1.50699 * 109.47027 * 150.00431 * 13 12 10 16 16 H 1.08001 * 120.00289 * 359.97438 * 15 13 12 17 17 C 1.37877 * 119.99824 * 180.02562 * 15 13 12 18 18 N 1.31512 * 120.00020 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99964 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47506 * 89.99418 * 19 17 15 21 21 H 1.48496 * 109.47178 * 209.99880 * 19 17 15 22 22 H 1.48505 * 109.46812 * 329.99469 * 19 17 15 23 23 C 1.52998 * 109.46987 * 269.99983 * 13 12 10 24 24 C 1.52996 * 109.47272 * 65.00058 * 23 13 12 25 25 H 1.09007 * 109.47331 * 299.99866 * 1 2 3 26 26 H 1.08998 * 109.47510 * 60.00287 * 1 2 3 27 27 H 1.09006 * 109.46984 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47224 * 240.00582 * 2 1 3 29 29 H 1.08998 * 109.47510 * 119.99713 * 2 1 3 30 30 H 1.08002 * 120.78798 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.25431 * 179.76465 * 6 5 4 32 32 H 1.08003 * 119.42107 * 180.25166 * 7 6 5 33 33 H 0.97003 * 119.99894 * 180.02562 * 18 17 15 34 34 H 1.09002 * 109.47358 * 185.00091 * 23 13 12 35 35 H 1.09006 * 109.47589 * 304.99722 * 23 13 12 36 36 H 1.09001 * 109.47151 * 179.97438 * 24 23 13 37 37 H 1.09002 * 109.47201 * 299.99785 * 24 23 13 38 38 H 1.09001 * 109.47428 * 59.99677 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7066 0.0000 4 6 3.8713 1.4167 -0.0008 5 6 4.3743 0.1135 -0.0066 6 6 5.7444 -0.0624 -0.0014 7 6 6.5767 1.0497 -0.0017 8 7 6.0841 2.2668 -0.0013 9 6 4.7735 2.4903 -0.0011 10 6 4.2656 3.8754 -0.0001 11 8 3.0685 4.0835 -0.0004 12 8 5.1292 4.9098 0.0001 13 6 4.5587 6.2451 0.0006 14 1 3.5976 6.2292 0.5144 15 6 5.4929 7.1903 0.7111 16 1 6.4223 6.8241 1.1216 17 6 5.1606 8.5224 0.8379 18 7 4.0287 8.9682 0.3384 19 14 6.3183 9.6940 1.7192 20 1 7.2688 10.2803 0.7406 21 1 5.5321 10.7801 2.3574 22 1 7.0744 8.9527 2.7605 23 6 4.3581 6.7144 -1.4418 24 6 3.3150 5.8287 -2.1260 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7079 -0.7364 -0.0102 31 1 6.1653 -1.0570 -0.0018 32 1 7.6478 0.9108 -0.0018 33 1 3.7951 9.9055 0.4273 34 1 4.0136 7.7486 -1.4428 35 1 5.3030 6.6458 -1.9810 36 1 3.1718 6.1634 -3.1534 37 1 3.6595 4.7946 -2.1250 38 1 2.3701 5.8974 -1.5868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835340029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:07 Heat of formation + Delta-G solvation = -72.975750 kcal Electronic energy + Delta-G solvation = -21514.395705 eV Core-core repulsion = 18254.539003 eV Total energy + Delta-G solvation = -3259.856702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.74906 -40.51833 -37.67682 -35.52325 -34.32659 -33.45093 -33.22014 -32.53112 -29.37722 -26.64326 -25.23473 -24.75791 -24.35677 -22.57749 -21.48120 -19.47719 -18.66526 -18.47181 -17.79250 -17.34394 -17.09096 -16.62183 -16.29523 -15.80053 -15.62966 -15.15961 -14.83218 -14.80940 -14.51641 -13.94460 -13.67608 -13.37569 -13.29959 -13.19009 -13.07875 -12.83374 -12.59842 -12.51941 -12.48878 -12.19011 -12.04681 -11.75689 -11.51949 -11.42267 -10.85423 -10.75060 -10.62941 -10.55318 -10.38137 -8.59452 -8.28054 -6.44820 -0.60879 0.06434 0.46388 1.38861 1.41752 1.42693 1.48342 1.53909 1.91091 2.39428 2.69178 3.00855 3.29189 3.67135 3.80408 3.87371 4.00715 4.04931 4.24510 4.34551 4.36634 4.42280 4.50752 4.55023 4.75532 4.81618 4.84926 4.89044 4.94297 5.05167 5.19442 5.22433 5.32005 5.48568 5.50176 5.64276 5.90245 6.08163 6.54863 6.71096 7.00106 7.26138 8.78996 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.004453 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.067543 B = 6286.639953 C = 7121.565238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.153 4.153 3 S -0.054 6.054 4 C -0.097 4.097 5 C -0.101 4.101 6 C -0.094 4.094 7 C 0.077 3.923 8 N -0.455 5.455 9 C 0.060 3.940 10 C 0.493 3.507 11 O -0.502 6.502 12 O -0.346 6.346 13 C 0.224 3.776 14 H 0.009 0.991 15 C -0.552 4.552 16 H 0.060 0.940 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.269 1.269 23 C -0.127 4.127 24 C -0.126 4.126 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.184 0.816 31 H 0.201 0.799 32 H 0.199 0.801 33 H 0.271 0.729 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -23.474 -1.857 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.300 4.300 3 S 0.193 5.807 4 C -0.214 4.214 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.089 4.089 8 N -0.166 5.166 9 C -0.081 4.081 10 C 0.337 3.663 11 O -0.393 6.393 12 O -0.261 6.261 13 C 0.171 3.829 14 H 0.027 0.973 15 C -0.589 4.589 16 H 0.078 0.922 17 C -0.180 4.180 18 N -0.550 5.550 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.193 1.193 23 C -0.166 4.166 24 C -0.183 4.183 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.201 0.799 31 H 0.218 0.782 32 H 0.216 0.784 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.798 -21.392 -1.878 21.550 hybrid contribution 0.485 -0.517 0.398 0.813 sum -1.313 -21.909 -1.480 21.998 Atomic orbital electron populations 1.21489 0.91214 1.04072 1.02575 1.24134 1.01643 0.97365 1.06891 1.87710 0.94426 1.10037 1.88527 1.23245 0.99559 0.96971 1.01602 1.22119 0.97914 0.93963 0.99236 1.22911 0.92609 1.02569 0.93449 1.23688 1.03030 0.86106 0.96045 1.67647 1.12391 1.27904 1.08676 1.19650 0.90333 0.89668 1.08431 1.21242 0.84778 0.86839 0.73479 1.90712 1.16689 1.85054 1.46825 1.86646 1.40449 1.17279 1.81764 1.20453 0.93772 0.73967 0.94728 0.97296 1.21292 1.06171 0.93705 1.37763 0.92195 1.25783 0.97275 0.99023 0.95894 1.70006 1.23493 1.16361 1.45161 0.85208 0.78206 0.77538 0.78604 1.19070 1.19858 1.19333 1.21857 0.97466 1.02004 0.95229 1.21676 0.98692 0.98038 0.99937 0.92529 0.92423 0.88218 0.87618 0.87727 0.79923 0.78216 0.78399 0.91921 0.89143 0.94057 0.91867 0.95264 0.94087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.92 71.98 0.71 -1.24 16 2 C -0.15 -2.46 4.90 71.98 0.35 -2.11 16 3 S -0.05 -1.63 18.97 -56.49 -1.07 -2.70 16 4 C -0.10 -2.92 6.17 23.11 0.14 -2.77 16 5 C -0.10 -1.85 9.27 22.60 0.21 -1.64 16 6 C -0.09 -1.35 10.10 22.41 0.23 -1.13 16 7 C 0.08 1.69 11.17 84.93 0.95 2.64 16 8 N -0.45 -16.21 10.11 -184.50 -1.87 -18.07 16 9 C 0.06 2.35 6.76 41.91 0.28 2.63 16 10 C 0.49 24.11 6.38 70.27 0.45 24.56 16 11 O -0.50 -25.39 10.93 19.83 0.22 -25.17 16 12 O -0.35 -19.11 9.62 -56.68 -0.55 -19.65 16 13 C 0.22 13.19 2.25 29.85 0.07 13.26 16 14 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 15 C -0.55 -33.53 8.90 25.60 0.23 -33.30 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.02 1.16 5.29 84.65 0.45 1.61 16 18 N -0.91 -53.95 11.29 21.45 0.24 -53.71 16 19 Si 0.98 44.84 29.54 68.60 2.03 46.87 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.13 -6.91 5.49 30.59 0.17 -6.74 16 24 C -0.13 -5.98 8.56 71.98 0.62 -5.37 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.11 1.28 7.56 -2.39 -0.02 1.27 16 29 H 0.10 1.30 7.58 -2.40 -0.02 1.28 16 30 H 0.18 1.82 5.66 -2.91 -0.02 1.81 16 31 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 32 H 0.20 2.78 8.06 -2.91 -0.02 2.75 16 33 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.09 5.23 5.95 -2.39 -0.01 5.21 16 35 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.03 1.36 6.06 -2.39 -0.01 1.35 16 38 H 0.04 2.02 7.79 -2.39 -0.02 2.00 16 Total: -1.00 -78.41 327.66 4.92 -73.49 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.07 Total: 8.55 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 4.85 Total: -9.61 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -1.62 Total: -71.78 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.33 Total: -44.82 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -1.07 Total: -2.70 kcal Total: -78.41 4.92 -73.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.512 kcal (2) G-P(sol) polarization free energy of solvation -78.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds