Wall clock time and date at job start Tue Mar 31 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76205 * 102.99794 * 2 1 4 4 C 1.39581 * 119.64379 * 179.97438 * 3 2 1 5 5 C 1.38209 * 119.29776 * 179.97438 * 4 3 2 6 6 C 1.38867 * 118.59031 * 0.02562 * 5 4 3 7 7 C 1.39133 * 119.23893 * 359.97438 * 6 5 4 8 8 C 1.48041 * 119.68406 * 180.02562 * 7 6 5 9 9 O 1.21434 * 120.00148 * 0.02562 * 8 7 6 10 10 O 1.34688 * 120.00073 * 180.02562 * 8 7 6 11 11 C 1.45203 * 117.00034 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47277 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46938 * 300.00247 * 12 11 10 14 14 C 1.53006 * 109.46718 * 59.99862 * 12 11 10 15 15 C 1.50697 * 109.46975 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00306 * 1.36597 * 15 12 11 17 17 C 1.37881 * 119.99692 * 181.36257 * 15 12 11 18 18 N 1.31519 * 119.99908 * 193.96663 * 17 15 12 19 19 Si 1.86795 * 120.00074 * 13.96390 * 17 15 12 20 20 H 1.48494 * 109.47461 * 84.55802 * 19 17 15 21 21 H 1.48502 * 109.47450 * 204.55852 * 19 17 15 22 22 H 1.48508 * 109.47345 * 324.55456 * 19 17 15 23 23 N 1.32108 * 119.64247 * 359.73272 * 3 2 1 24 24 H 1.08992 * 109.47239 * 60.00039 * 1 2 3 25 25 H 1.09005 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46934 * 299.99534 * 1 2 3 27 27 H 1.08003 * 120.34757 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.70538 * 180.02562 * 5 4 3 29 29 H 1.08001 * 120.37854 * 179.97438 * 6 5 4 30 30 H 1.08998 * 109.46947 * 300.00005 * 11 10 8 31 31 H 1.09003 * 109.47196 * 59.99581 * 11 10 8 32 32 H 1.08998 * 109.47485 * 69.31599 * 13 12 11 33 33 H 1.09004 * 109.46733 * 189.31732 * 13 12 11 34 34 H 1.09000 * 109.47043 * 309.31189 * 13 12 11 35 35 H 1.08998 * 109.47156 * 60.00039 * 14 12 11 36 36 H 1.09000 * 109.46500 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.47191 * 299.99996 * 14 12 11 38 38 H 0.96998 * 119.99493 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5477 2.1167 0.0005 5 6 3.8504 3.4653 0.0000 6 6 2.8062 4.3807 -0.0005 7 6 1.4948 3.9159 -0.0010 8 6 0.3741 4.8832 -0.0022 9 8 0.6016 6.0760 -0.0031 10 8 -0.8978 4.4402 -0.0022 11 6 -1.9459 5.4451 -0.0039 12 6 -3.3124 4.7570 -0.0042 13 6 -3.4425 3.8822 -1.2527 14 6 -3.4443 3.8846 1.2458 15 6 -4.4000 5.8000 -0.0054 16 1 -4.1426 6.8486 -0.0281 17 6 -5.7239 5.4155 0.0225 18 7 -6.6681 6.2886 -0.2529 19 14 -6.1762 3.6547 0.4514 20 1 -6.2398 3.5053 1.9274 21 1 -7.4996 3.3262 -0.1368 22 1 -5.1488 2.7323 -0.0957 23 7 1.2385 2.6118 -0.0054 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 4.3375 1.3801 0.0014 28 1 4.8772 3.8000 0.0000 29 1 3.0097 5.4414 -0.0005 30 1 -1.8529 6.0686 0.8853 31 1 -1.8521 6.0664 -0.8946 32 1 -2.7663 3.0311 -1.1721 33 1 -4.4684 3.5243 -1.3402 34 1 -3.1856 4.4681 -2.1352 35 1 -3.3515 4.5077 2.1352 36 1 -4.4176 3.3940 1.2453 37 1 -2.6575 3.1302 1.2471 38 1 -7.5994 6.0180 -0.2336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842758116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:22 Heat of formation + Delta-G solvation = -37.159434 kcal Electronic energy + Delta-G solvation = -21525.189486 eV Core-core repulsion = 18266.885896 eV Total energy + Delta-G solvation = -3258.303590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74746 -39.45993 -36.89378 -35.11677 -33.03059 -31.89553 -31.66239 -28.96847 -26.79976 -26.26245 -25.11754 -24.57296 -24.04703 -21.35228 -19.16889 -18.48748 -17.62709 -16.44021 -16.18115 -16.09555 -15.95622 -15.84086 -15.19095 -14.58117 -14.45937 -13.85265 -13.53371 -13.40905 -13.17507 -12.87589 -12.81336 -12.44256 -12.23334 -12.04653 -11.91022 -11.67997 -11.02073 -10.63048 -10.45645 -10.36636 -10.29447 -10.26544 -10.07601 -10.04667 -9.87336 -9.75626 -9.10799 -8.65599 -8.47334 -7.86048 -6.16772 -4.15026 0.28401 0.79323 1.20645 2.00996 2.42585 2.83558 3.26911 3.35596 3.40162 3.51405 4.10561 4.36234 4.54101 4.64410 4.71226 4.95954 5.08310 5.13488 5.16045 5.16758 5.57829 5.72225 5.75357 5.79019 5.87706 6.06943 6.13296 6.24914 6.53814 6.57850 6.70034 6.79846 6.80108 6.96189 7.21376 7.25511 7.44002 7.69398 8.02499 8.40888 8.85507 9.46795 10.95927 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.004441 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.536398 B = 6302.930446 C = 7497.678946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.080 6.080 3 C 0.116 3.884 4 C -0.126 4.126 5 C -0.066 4.066 6 C -0.117 4.117 7 C 0.118 3.882 8 C 0.514 3.486 9 O -0.502 6.502 10 O -0.328 6.328 11 C 0.090 3.910 12 C 0.045 3.955 13 C -0.139 4.139 14 C -0.146 4.146 15 C -0.519 4.519 16 H 0.076 0.924 17 C 0.079 3.921 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.285 1.285 21 H -0.305 1.305 22 H -0.246 1.246 23 N -0.439 5.439 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.576 -11.796 0.544 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.159 5.841 3 C -0.135 4.135 4 C -0.152 4.152 5 C -0.093 4.093 6 C -0.140 4.140 7 C -0.022 4.022 8 C 0.356 3.644 9 O -0.391 6.391 10 O -0.242 6.242 11 C 0.017 3.983 12 C 0.044 3.956 13 C -0.196 4.196 14 C -0.202 4.202 15 C -0.556 4.556 16 H 0.094 0.906 17 C -0.124 4.124 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.212 1.212 21 H -0.233 1.233 22 H -0.172 1.172 23 N -0.154 5.154 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.111 0.889 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.103 -12.672 0.511 23.769 hybrid contribution -0.468 0.733 0.317 0.925 sum 19.635 -11.940 0.829 22.995 Atomic orbital electron populations 1.23525 0.92337 1.06261 1.07719 1.85375 1.09265 0.98040 1.91397 1.23174 0.91816 0.98665 0.99867 1.21926 0.95823 0.97181 1.00294 1.21515 1.00006 0.92040 0.95755 1.22106 0.91387 1.02437 0.98046 1.20232 0.91521 0.89645 1.00793 1.20669 0.83770 0.86393 0.73561 1.90836 1.85722 1.16587 1.45909 1.86650 1.14065 1.41925 1.81604 1.23538 0.84150 0.88813 1.01803 1.18576 0.90036 0.94524 0.92499 1.22215 1.00640 0.98311 0.98466 1.22284 0.99283 0.99213 0.99447 1.20657 0.88942 0.93227 1.52808 0.90603 1.24903 0.96157 0.97378 0.93957 1.69945 1.00505 1.35372 1.46817 0.87290 0.76179 0.86458 0.78383 1.21247 1.23322 1.17182 1.68100 1.34782 1.01406 1.11126 0.88867 0.87784 0.88918 0.83626 0.83186 0.82880 0.91567 0.91469 0.94830 0.92726 0.93872 0.93248 0.94197 0.93994 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 10.01 101.05 1.01 -0.33 16 2 S -0.08 -0.81 22.55 -107.50 -2.42 -3.24 16 3 C 0.12 1.38 7.00 -16.93 -0.12 1.26 16 4 C -0.13 -1.13 9.84 -39.09 -0.38 -1.52 16 5 C -0.07 -0.54 10.16 -39.36 -0.40 -0.94 16 6 C -0.12 -1.30 9.63 -39.02 -0.38 -1.68 16 7 C 0.12 1.73 6.74 -83.05 -0.56 1.17 16 8 C 0.51 9.16 7.95 34.75 0.28 9.43 16 9 O -0.50 -9.62 16.10 -19.21 -0.31 -9.93 16 10 O -0.33 -6.41 8.88 -40.46 -0.36 -6.77 16 11 C 0.09 1.91 4.25 37.16 0.16 2.07 16 12 C 0.04 1.04 0.58 -155.66 -0.09 0.95 16 13 C -0.14 -3.08 7.58 37.16 0.28 -2.79 16 14 C -0.15 -3.20 7.55 37.16 0.28 -2.92 16 15 C -0.52 -14.25 8.62 -34.44 -0.30 -14.55 16 16 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 17 C 0.08 2.23 5.32 -17.82 -0.09 2.14 16 18 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 19 Si 0.88 21.58 22.79 -169.99 -3.87 17.71 16 20 H -0.28 -6.90 7.10 56.52 0.40 -6.50 16 21 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.25 -5.57 4.65 56.52 0.26 -5.30 16 23 N -0.44 -6.40 9.18 -8.68 -0.08 -6.48 16 24 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 28 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 29 H 0.15 1.54 7.63 -52.49 -0.40 1.14 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.03 0.67 7.94 -51.93 -0.41 0.26 16 33 H 0.05 1.25 4.30 -51.93 -0.22 1.03 16 34 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 37 H 0.04 0.84 7.68 -51.93 -0.40 0.44 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -31.49 326.72 -6.71 -38.20 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.05 Total: -0.70 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.31 Total: -7.71 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.69 Total: -32.49 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.67 Total: -16.70 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -3.87 Total: 17.71 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.42 Total: -3.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.49 -6.71 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842758116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.039 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds