Wall clock time and date at job start Tue Mar 31 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76205 * 102.99794 * 2 1 4 4 C 1.39581 * 119.64379 * 179.97438 * 3 2 1 5 5 C 1.38209 * 119.29776 * 179.97438 * 4 3 2 6 6 C 1.38867 * 118.59031 * 0.02562 * 5 4 3 7 7 C 1.39133 * 119.23893 * 359.97438 * 6 5 4 8 8 C 1.48041 * 119.68406 * 180.02562 * 7 6 5 9 9 O 1.21434 * 120.00148 * 0.02562 * 8 7 6 10 10 O 1.34688 * 120.00073 * 180.02562 * 8 7 6 11 11 C 1.45203 * 117.00034 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47277 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46938 * 300.00247 * 12 11 10 14 14 C 1.53006 * 109.46718 * 59.99862 * 12 11 10 15 15 C 1.50697 * 109.46975 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00306 * 1.36597 * 15 12 11 17 17 C 1.37881 * 119.99692 * 181.36257 * 15 12 11 18 18 N 1.31519 * 119.99908 * 193.96663 * 17 15 12 19 19 Si 1.86795 * 120.00074 * 13.96390 * 17 15 12 20 20 H 1.48494 * 109.47461 * 84.55802 * 19 17 15 21 21 H 1.48502 * 109.47450 * 204.55852 * 19 17 15 22 22 H 1.48508 * 109.47345 * 324.55456 * 19 17 15 23 23 N 1.32108 * 119.64247 * 359.73272 * 3 2 1 24 24 H 1.08992 * 109.47239 * 60.00039 * 1 2 3 25 25 H 1.09005 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46934 * 299.99534 * 1 2 3 27 27 H 1.08003 * 120.34757 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.70538 * 180.02562 * 5 4 3 29 29 H 1.08001 * 120.37854 * 179.97438 * 6 5 4 30 30 H 1.08998 * 109.46947 * 300.00005 * 11 10 8 31 31 H 1.09003 * 109.47196 * 59.99581 * 11 10 8 32 32 H 1.08998 * 109.47485 * 69.31599 * 13 12 11 33 33 H 1.09004 * 109.46733 * 189.31732 * 13 12 11 34 34 H 1.09000 * 109.47043 * 309.31189 * 13 12 11 35 35 H 1.08998 * 109.47156 * 60.00039 * 14 12 11 36 36 H 1.09000 * 109.46500 * 180.02562 * 14 12 11 37 37 H 1.09000 * 109.47191 * 299.99996 * 14 12 11 38 38 H 0.96998 * 119.99493 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5477 2.1167 0.0005 5 6 3.8504 3.4653 0.0000 6 6 2.8062 4.3807 -0.0005 7 6 1.4948 3.9159 -0.0010 8 6 0.3741 4.8832 -0.0022 9 8 0.6016 6.0760 -0.0031 10 8 -0.8978 4.4402 -0.0022 11 6 -1.9459 5.4451 -0.0039 12 6 -3.3124 4.7570 -0.0042 13 6 -3.4425 3.8822 -1.2527 14 6 -3.4443 3.8846 1.2458 15 6 -4.4000 5.8000 -0.0054 16 1 -4.1426 6.8486 -0.0281 17 6 -5.7239 5.4155 0.0225 18 7 -6.6681 6.2886 -0.2529 19 14 -6.1762 3.6547 0.4514 20 1 -6.2398 3.5053 1.9274 21 1 -7.4996 3.3262 -0.1368 22 1 -5.1488 2.7323 -0.0957 23 7 1.2385 2.6118 -0.0054 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 4.3375 1.3801 0.0014 28 1 4.8772 3.8000 0.0000 29 1 3.0097 5.4414 -0.0005 30 1 -1.8529 6.0686 0.8853 31 1 -1.8521 6.0664 -0.8946 32 1 -2.7663 3.0311 -1.1721 33 1 -4.4684 3.5243 -1.3402 34 1 -3.1856 4.4681 -2.1352 35 1 -3.3515 4.5077 2.1352 36 1 -4.4176 3.3940 1.2453 37 1 -2.6575 3.1302 1.2471 38 1 -7.5994 6.0180 -0.2336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842758116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:22 Heat of formation + Delta-G solvation = -56.761843 kcal Electronic energy + Delta-G solvation = -21526.039510 eV Core-core repulsion = 18266.885896 eV Total energy + Delta-G solvation = -3259.153614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90429 -40.65225 -38.56195 -36.81594 -33.96751 -33.75503 -32.73727 -29.75397 -28.38668 -28.03819 -27.08971 -25.87475 -24.89178 -22.57540 -21.03472 -19.63863 -18.73206 -18.07124 -17.57400 -17.36663 -17.28465 -17.14544 -16.72691 -15.64617 -15.38010 -15.07993 -14.99275 -14.77635 -14.50240 -14.22706 -14.20246 -13.88014 -13.76217 -13.52582 -13.36927 -13.00021 -12.47255 -12.37857 -12.04957 -12.03048 -11.91313 -11.54609 -11.52520 -11.24506 -11.12213 -10.91037 -10.80539 -10.65602 -10.45732 -8.64084 -8.35995 -6.38605 -0.64983 0.00196 0.43272 1.19886 1.24804 1.33875 1.36059 1.47802 1.51495 2.30602 2.55939 2.99441 3.07232 3.73078 3.80631 3.94420 3.97755 4.07897 4.11520 4.31092 4.32418 4.35165 4.36615 4.50707 4.74931 4.77671 4.87599 4.89654 4.96076 4.99076 5.05141 5.10398 5.32516 5.36392 5.39270 5.61281 5.68170 6.21875 6.26767 6.63419 6.66827 7.26623 8.80513 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019860 B = 0.004441 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.536398 B = 6302.930446 C = 7497.678946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.059 6.059 3 C 0.093 3.907 4 C -0.110 4.110 5 C -0.050 4.050 6 C -0.111 4.111 7 C 0.083 3.917 8 C 0.511 3.489 9 O -0.526 6.526 10 O -0.332 6.332 11 C 0.101 3.899 12 C 0.040 3.960 13 C -0.134 4.134 14 C -0.142 4.142 15 C -0.523 4.523 16 H 0.035 0.965 17 C 0.026 3.974 18 N -0.939 5.939 19 Si 0.940 3.060 20 H -0.278 1.278 21 H -0.308 1.308 22 H -0.214 1.214 23 N -0.468 5.468 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.198 0.802 29 H 0.160 0.840 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.656 -14.786 0.829 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.180 5.820 3 C -0.159 4.159 4 C -0.136 4.136 5 C -0.076 4.076 6 C -0.135 4.135 7 C -0.055 4.055 8 C 0.356 3.644 9 O -0.415 6.415 10 O -0.246 6.246 11 C 0.027 3.973 12 C 0.039 3.961 13 C -0.192 4.192 14 C -0.198 4.198 15 C -0.561 4.561 16 H 0.053 0.947 17 C -0.172 4.172 18 N -0.578 5.578 19 Si 0.769 3.231 20 H -0.206 1.206 21 H -0.237 1.237 22 H -0.138 1.138 23 N -0.184 5.184 24 H 0.097 0.903 25 H 0.146 0.854 26 H 0.097 0.903 27 H 0.199 0.801 28 H 0.215 0.785 29 H 0.178 0.822 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.219 -15.663 0.798 28.019 hybrid contribution -1.251 1.701 0.209 2.122 sum 21.967 -13.962 1.007 26.048 Atomic orbital electron populations 1.23533 0.92889 1.07401 1.06274 1.85230 1.08704 0.96835 1.91217 1.23661 0.92854 0.98957 1.00388 1.22430 0.95356 0.98391 0.97400 1.22036 1.01220 0.91063 0.93297 1.22335 0.90650 1.03553 0.96922 1.19965 0.91258 0.89497 1.04760 1.21362 0.83635 0.87062 0.72389 1.90809 1.85829 1.17747 1.47148 1.86629 1.14746 1.41022 1.82210 1.23114 0.84474 0.88809 1.00890 1.18513 0.89576 0.93947 0.94038 1.22129 1.00711 0.98745 0.97577 1.22209 0.99860 0.99373 0.98380 1.20887 0.90563 0.92592 1.52031 0.94689 1.25717 0.95950 1.01815 0.93728 1.70078 1.01004 1.37896 1.48774 0.86374 0.76359 0.81932 0.78453 1.20552 1.23690 1.13789 1.67930 1.36465 1.01588 1.12423 0.90285 0.85443 0.90260 0.80051 0.78472 0.82228 0.92417 0.92637 0.92547 0.93343 0.94143 0.93391 0.94458 0.91694 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 10.01 113.37 1.14 -1.37 16 2 S -0.06 -1.04 22.55 -56.49 -1.27 -2.32 16 3 C 0.09 1.98 7.00 84.98 0.60 2.57 16 4 C -0.11 -1.50 9.84 22.59 0.22 -1.28 16 5 C -0.05 -0.59 10.16 22.41 0.23 -0.36 16 6 C -0.11 -2.23 9.63 22.64 0.22 -2.01 16 7 C 0.08 2.37 6.74 41.80 0.28 2.66 16 8 C 0.51 18.40 7.95 70.42 0.56 18.96 16 9 O -0.53 -20.58 16.10 20.05 0.32 -20.26 16 10 O -0.33 -13.00 8.88 -55.97 -0.50 -13.50 16 11 C 0.10 4.39 4.25 71.98 0.31 4.70 16 12 C 0.04 1.87 0.58 -52.93 -0.03 1.84 16 13 C -0.13 -5.81 7.58 71.98 0.55 -5.26 16 14 C -0.14 -6.03 7.55 71.98 0.54 -5.48 16 15 C -0.52 -29.68 8.62 25.60 0.22 -29.45 16 16 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 17 C 0.03 1.52 5.32 84.65 0.45 1.97 16 18 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 19 Si 0.94 44.14 22.79 68.60 1.56 45.70 16 20 H -0.28 -12.75 7.10 99.48 0.71 -12.04 16 21 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 22 H -0.21 -8.92 4.65 99.48 0.46 -8.46 16 23 N -0.47 -13.05 9.18 -181.36 -1.67 -14.72 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 29 H 0.16 2.92 7.63 -2.91 -0.02 2.90 16 30 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.06 2.16 7.94 -2.39 -0.02 2.15 16 33 H 0.05 2.13 4.30 -2.38 -0.01 2.12 16 34 H 0.04 1.72 8.12 -2.39 -0.02 1.71 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.60 2.25 -2.39 -0.01 1.60 16 37 H 0.06 2.46 7.68 -2.39 -0.02 2.44 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -71.27 326.72 4.85 -66.42 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.82 Total: 9.30 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 5.28 Total: -12.54 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.37 Total: -72.81 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.17 Total: -33.76 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.56 Total: 45.70 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -1.27 Total: -2.32 kcal Total: -71.27 4.85 -66.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842758116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.662 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds