Wall clock time and date at job start Tue Mar 31 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42909 * 113.99845 * 2 1 4 4 C 1.52999 * 109.46984 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47175 * 65.00399 * 4 3 2 6 6 C 1.36774 * 119.99647 * 264.36675 * 5 4 3 7 7 H 1.08001 * 119.99792 * 140.78060 * 6 5 4 8 8 C 1.39053 * 120.00189 * 320.78005 * 6 5 4 9 9 N 1.31377 * 119.99552 * 341.07515 * 8 6 5 10 10 Si 1.86792 * 120.00294 * 161.07497 * 8 6 5 11 11 H 1.48497 * 109.47252 * 89.99779 * 10 8 6 12 12 H 1.48501 * 109.47461 * 210.00223 * 10 8 6 13 13 H 1.48501 * 109.46906 * 330.00037 * 10 8 6 14 14 C 1.34773 * 120.00415 * 84.36299 * 5 4 3 15 15 O 1.21856 * 119.99647 * 4.96679 * 14 5 4 16 16 C 1.41274 * 120.00327 * 184.97240 * 14 5 4 17 17 C 1.35804 * 120.00113 * 174.51926 * 16 14 5 18 18 C 1.50698 * 119.99866 * 179.97438 * 17 16 14 19 19 C 1.41506 * 119.99772 * 359.97438 * 17 16 14 20 20 C 1.37114 * 125.47172 * 115.01056 * 19 17 16 21 21 C 1.37419 * 113.20925 * 179.97438 * 20 19 17 22 22 C 1.33881 * 115.13321 * 0.02562 * 21 20 19 23 23 S 1.70601 * 111.02191 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46701 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47188 * 299.99967 * 1 2 3 26 26 H 1.09000 * 109.47095 * 60.00231 * 1 2 3 27 27 H 1.08997 * 109.47104 * 60.00031 * 3 2 1 28 28 H 1.09001 * 109.46694 * 300.00162 * 3 2 1 29 29 H 1.08999 * 109.47394 * 304.99938 * 4 3 2 30 30 H 1.09002 * 109.46895 * 184.99959 * 4 3 2 31 31 H 0.97003 * 119.99350 * 180.02562 * 9 8 6 32 32 H 1.08005 * 119.99904 * 354.50718 * 16 14 5 33 33 H 1.09002 * 109.46768 * 269.99462 * 18 17 16 34 34 H 1.08996 * 109.47370 * 29.99091 * 18 17 16 35 35 H 1.09002 * 109.47483 * 149.99843 * 18 17 16 36 36 H 1.08001 * 123.39877 * 0.24147 * 20 19 17 37 37 H 1.08000 * 122.43171 * 180.02562 * 21 20 19 38 38 H 1.08000 * 124.48905 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.2087 -0.7828 -1.3016 7 1 3.9175 -1.3484 -2.1744 8 6 4.8193 -1.4241 -0.2295 9 7 5.5008 -0.7269 0.6512 10 14 4.6708 -3.2766 -0.0414 11 1 5.7925 -3.9381 -0.7550 12 1 4.7214 -3.6336 1.3991 13 1 3.3803 -3.7308 -0.6190 14 6 4.1540 1.3204 -2.3523 15 8 4.0355 2.5313 -2.2854 16 6 4.4772 0.7093 -3.5844 17 6 4.5464 1.4571 -4.7158 18 6 4.8917 0.8053 -6.0299 19 6 4.2943 2.8485 -4.6607 20 6 5.2111 3.8342 -4.9213 21 6 4.6950 5.1013 -4.7934 22 6 3.4046 5.1569 -4.4409 23 16 2.7551 3.5912 -4.2475 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1767 0.0902 31 1 5.9271 -1.1743 1.3989 32 1 4.6694 -0.3527 -3.6264 33 1 5.9724 0.8221 -6.1708 34 1 4.5417 -0.2269 -6.0265 35 1 4.4108 1.3494 -6.8429 36 1 6.2344 3.6348 -5.2032 37 1 5.2873 5.9880 -4.9648 38 1 2.8485 6.0716 -4.2979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857723263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:31 Heat of formation + Delta-G solvation = -28.213911 kcal Electronic energy + Delta-G solvation = -22104.532069 eV Core-core repulsion = 18846.616387 eV Total energy + Delta-G solvation = -3257.915683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81321 -38.96058 -38.32893 -36.63357 -35.48692 -33.47987 -31.38848 -29.42422 -28.71428 -27.25716 -26.48458 -25.35670 -23.81865 -21.67919 -20.83075 -19.89168 -18.95177 -18.03701 -17.13268 -16.99056 -16.93250 -16.40172 -16.15010 -15.86432 -15.54095 -14.94504 -14.80424 -14.49773 -14.13349 -13.67954 -13.44778 -13.36245 -13.27769 -13.19437 -12.95393 -12.86265 -12.82331 -12.58283 -12.48151 -12.30982 -12.07991 -11.75827 -11.59669 -10.99365 -10.54152 -10.44708 -9.85521 -9.45643 -9.05475 -8.67459 -8.22919 -5.92620 -0.17728 0.62034 1.22248 1.43000 1.48466 1.51377 1.61631 2.01034 2.35470 2.73589 2.99001 3.12235 3.33109 4.09244 4.22981 4.26123 4.33147 4.44045 4.53683 4.57333 4.61274 4.64049 4.71657 4.76157 4.77454 4.83695 4.86658 5.01641 5.14226 5.23785 5.35899 5.43219 5.50691 5.64070 5.70741 5.84604 6.09879 6.41112 6.49171 7.21836 7.71327 8.13431 8.80126 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.016701 B = 0.005851 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.108014 B = 4784.759510 C = 5609.486338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.067 3.933 4 C 0.119 3.881 5 N -0.433 5.433 6 C -0.330 4.330 7 H 0.090 0.910 8 C 0.005 3.995 9 N -0.897 5.897 10 Si 0.978 3.022 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.264 1.264 14 C 0.475 3.525 15 O -0.611 6.611 16 C -0.186 4.186 17 C -0.007 4.007 18 C -0.104 4.104 19 C -0.149 4.149 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.280 4.280 23 S 0.203 5.797 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.269 0.731 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 3.601 -8.944 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.011 4.011 4 C -0.005 4.005 5 N -0.150 5.150 6 C -0.458 4.458 7 H 0.107 0.893 8 C -0.197 4.197 9 N -0.535 5.535 10 Si 0.803 3.197 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.188 1.188 14 C 0.269 3.731 15 O -0.501 6.501 16 C -0.210 4.210 17 C -0.012 4.012 18 C -0.161 4.161 19 C -0.267 4.267 20 C -0.178 4.178 21 C -0.179 4.179 22 C -0.417 4.417 23 S 0.475 5.525 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.059 3.487 -8.283 11.428 hybrid contribution 1.396 0.066 0.519 1.491 sum -5.662 3.553 -7.764 10.245 Atomic orbital electron populations 1.22887 0.80637 1.03349 1.00239 1.88063 1.20475 1.27820 1.95306 1.22797 0.94403 0.84549 0.99351 1.21248 0.91266 0.97536 0.90482 1.43428 1.56017 1.07509 1.08066 1.19467 1.38046 0.82912 1.05410 0.89278 1.26108 0.93452 1.03829 0.96350 1.70017 1.30121 1.38416 1.14928 0.85167 0.78951 0.78262 0.77364 1.19620 1.21042 1.18841 1.17656 0.81748 0.86777 0.86871 1.90790 1.58142 1.14208 1.86992 1.22259 1.05160 1.01297 0.92314 1.19733 0.94845 0.90379 0.96254 1.20906 1.03046 1.00783 0.91400 1.22369 0.99040 0.97073 1.08237 1.20756 0.99969 0.91525 1.05536 1.19985 0.95128 0.98244 1.04549 1.25253 1.01301 1.02980 1.12156 1.82619 1.11312 0.96375 1.62193 0.88773 0.93028 0.94219 0.91855 0.94835 0.89473 0.92754 0.92173 0.84839 0.89238 0.89821 0.90060 0.83802 0.83129 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.84 10.44 -148.98 -1.56 -18.40 16 3 C 0.07 2.80 6.24 71.98 0.45 3.25 16 4 C 0.12 5.92 5.30 86.38 0.46 6.38 16 5 N -0.43 -22.47 2.47 -645.90 -1.59 -24.07 16 6 C -0.33 -17.18 8.21 84.12 0.69 -16.49 16 7 H 0.09 4.45 6.72 -2.91 -0.02 4.43 16 8 C 0.00 0.25 4.95 84.96 0.42 0.67 16 9 N -0.90 -49.26 11.51 21.68 0.25 -49.01 16 10 Si 0.98 41.11 29.59 68.60 2.03 43.14 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 14 C 0.48 23.62 7.25 84.99 0.62 24.23 16 15 O -0.61 -31.21 11.60 -4.85 -0.06 -31.27 16 16 C -0.19 -7.92 8.81 22.45 0.20 -7.72 16 17 C -0.01 -0.25 5.71 -19.62 -0.11 -0.36 16 18 C -0.10 -2.58 10.02 71.24 0.71 -1.87 16 19 C -0.15 -5.45 3.76 22.81 0.09 -5.37 16 20 C -0.15 -4.96 10.25 21.81 0.22 -4.74 16 21 C -0.15 -4.52 10.15 21.08 0.21 -4.31 16 22 C -0.28 -8.69 10.92 66.83 0.73 -7.96 16 23 S 0.20 7.18 20.50 -56.49 -1.16 6.02 16 24 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 4.70 5.63 -2.39 -0.01 4.69 16 30 H 0.05 2.79 7.53 -2.39 -0.02 2.77 16 31 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.13 5.48 6.39 -2.91 -0.02 5.46 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 35 H 0.08 1.75 8.10 -2.39 -0.02 1.74 16 36 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.17 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -65.33 333.79 4.91 -60.43 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 1.06 Total: 25.42 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 5.93 Total: -12.27 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.34 Total: -73.08 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -1.61 Total: -49.67 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 7.18 SS G_CDS: -1.16 Total: 6.02 kcal Total: -65.33 4.91 -60.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857723263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.212 kcal (2) G-P(sol) polarization free energy of solvation -65.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds