Wall clock time and date at job start Tue Mar 31 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00037 * 2 1 4 4 C 1.52994 * 109.47217 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47397 * 65.00169 * 4 3 2 6 6 C 1.36765 * 120.00347 * 89.99457 * 5 4 3 7 7 H 1.07999 * 120.00172 * 218.02001 * 6 5 4 8 8 C 1.39054 * 119.99976 * 38.30000 * 6 5 4 9 9 N 1.31366 * 119.99884 * 19.98936 * 8 6 5 10 10 Si 1.86794 * 119.99900 * 199.98565 * 8 6 5 11 11 H 1.48503 * 109.47398 * 60.00180 * 10 8 6 12 12 H 1.48501 * 109.47163 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47415 * 300.00011 * 10 8 6 14 14 C 1.34786 * 119.99653 * 269.99922 * 5 4 3 15 15 O 1.21843 * 119.99823 * 4.79681 * 14 5 4 16 16 C 1.41278 * 119.99851 * 184.79278 * 14 5 4 17 17 C 1.35806 * 119.99764 * 173.17440 * 16 14 5 18 18 C 1.50697 * 119.99939 * 352.70999 * 17 16 14 19 19 C 1.41502 * 119.99732 * 172.70610 * 17 16 14 20 20 C 1.37117 * 125.47496 * 115.00105 * 19 17 16 21 21 C 1.37408 * 113.21224 * 179.97438 * 20 19 17 22 22 C 1.33878 * 115.13326 * 0.02562 * 21 20 19 23 23 S 1.70606 * 111.02436 * 359.74091 * 22 21 20 24 24 H 1.09000 * 109.47530 * 60.00227 * 1 2 3 25 25 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47703 * 300.00004 * 1 2 3 27 27 H 1.08998 * 109.47272 * 59.99331 * 3 2 1 28 28 H 1.08996 * 109.46947 * 300.00096 * 3 2 1 29 29 H 1.08997 * 109.47591 * 304.99741 * 4 3 2 30 30 H 1.09004 * 109.47422 * 184.99935 * 4 3 2 31 31 H 0.96995 * 120.00049 * 184.99073 * 9 8 6 32 32 H 1.07997 * 120.00042 * 353.18101 * 16 14 5 33 33 H 1.09001 * 109.47566 * 84.18883 * 18 17 16 34 34 H 1.09002 * 109.47273 * 204.18951 * 18 17 16 35 35 H 1.09005 * 109.47428 * 324.18433 * 18 17 16 36 36 H 1.08002 * 123.39571 * 359.97438 * 20 19 17 37 37 H 1.08005 * 122.43564 * 180.02562 * 21 20 19 38 38 H 1.08009 * 124.49417 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2675 1.3443 -2.3358 7 1 4.0004 1.0111 -3.3278 8 6 4.9124 2.5640 -2.1622 9 7 5.5851 2.8000 -1.0589 10 14 4.8221 3.8666 -3.4980 11 1 3.4037 4.2405 -3.7297 12 1 5.5875 5.0659 -3.0724 13 1 5.4037 3.3288 -4.7540 14 6 4.0959 -0.7760 -1.3331 15 8 3.7539 -1.4766 -0.3967 16 6 4.6174 -1.3682 -2.5049 17 6 4.8675 -2.7026 -2.5379 18 6 4.7460 -3.5233 -1.2798 19 6 5.2421 -3.3224 -3.7536 20 6 6.4550 -3.9097 -4.0067 21 6 6.5482 -4.4359 -5.2726 22 6 5.4558 -4.2873 -6.0320 23 16 4.2247 -3.4692 -5.1801 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 5.9739 3.6754 -0.9058 32 1 4.8173 -0.7597 -3.3745 33 1 3.7058 -3.8150 -1.1353 34 1 5.3649 -4.4162 -1.3673 35 1 5.0795 -2.9323 -0.4268 36 1 7.2563 -3.9542 -3.2840 37 1 7.4382 -4.9332 -5.6291 38 1 5.3640 -4.6427 -7.0479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857723264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:34 Heat of formation + Delta-G solvation = -18.627489 kcal Electronic energy + Delta-G solvation = -21687.617406 eV Core-core repulsion = 18430.117422 eV Total energy + Delta-G solvation = -3257.499984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.00378 -37.75949 -36.92653 -35.10249 -33.75544 -31.60853 -29.70072 -28.28302 -26.98184 -25.69962 -24.85371 -24.38244 -22.16667 -20.47499 -19.00932 -18.64501 -17.03619 -16.25212 -15.83491 -15.58532 -15.30881 -15.14333 -14.46340 -14.36696 -13.98146 -13.62768 -13.19377 -12.97712 -12.70593 -12.43761 -12.24882 -11.95021 -11.85747 -11.62829 -11.48596 -11.31344 -11.06751 -11.06267 -10.84351 -10.64230 -10.47615 -10.26666 -10.15429 -9.14559 -8.94036 -8.73569 -8.33846 -8.14147 -7.89841 -7.43179 -6.38681 -4.08518 0.98422 1.55694 2.18883 2.55051 2.97018 3.12666 3.18867 3.20892 4.08138 4.48026 4.58265 4.92083 5.08232 5.19347 5.40946 5.68998 5.70626 5.72985 5.76598 5.83067 6.01101 6.07317 6.15105 6.20219 6.24536 6.36221 6.47152 6.51562 6.56457 6.65845 6.81535 6.93272 7.10185 7.19430 7.32960 7.41907 7.91823 7.95853 8.37909 9.07532 9.56400 10.03616 10.59821 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.005605 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.505164 B = 4994.630788 C = 6215.941856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.050 3.950 4 C 0.117 3.883 5 N -0.429 5.429 6 C -0.332 4.332 7 H 0.088 0.912 8 C 0.042 3.958 9 N -0.858 5.858 10 Si 0.910 3.090 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.496 3.504 15 O -0.580 6.580 16 C -0.131 4.131 17 C -0.042 4.042 18 C -0.092 4.092 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.132 4.132 22 C -0.273 4.273 23 S 0.174 5.826 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.270 0.730 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 -7.003 -5.145 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C -0.028 4.028 4 C -0.007 4.007 5 N -0.147 5.147 6 C -0.461 4.461 7 H 0.106 0.894 8 C -0.164 4.164 9 N -0.494 5.494 10 Si 0.736 3.264 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.289 3.711 15 O -0.467 6.467 16 C -0.156 4.156 17 C -0.047 4.047 18 C -0.149 4.149 19 C -0.253 4.253 20 C -0.167 4.167 21 C -0.164 4.164 22 C -0.410 4.410 23 S 0.444 5.556 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.968 -6.932 -5.056 9.453 hybrid contribution 1.326 0.755 -0.643 1.655 sum -2.642 -6.177 -5.699 8.810 Atomic orbital electron populations 1.22616 0.83633 1.01580 0.98717 1.88198 1.17220 1.27730 1.95024 1.23096 0.96536 0.84485 0.98699 1.21451 0.89398 1.01807 0.88070 1.43226 1.56240 1.04001 1.11221 1.19389 1.36749 1.02029 0.87892 0.89438 1.25385 0.93473 0.99821 0.97726 1.69920 1.29473 1.22894 1.27150 0.86269 0.78552 0.80240 0.81327 1.19855 1.20844 1.19594 1.16917 0.82823 0.83347 0.87974 1.90681 1.53652 1.61562 1.40773 1.22345 0.99268 0.93734 1.00245 1.19171 0.99359 0.93841 0.92324 1.20883 1.01606 0.97398 0.95014 1.22468 0.97891 1.06700 0.98260 1.20799 0.97124 1.01261 0.97480 1.19887 0.99178 1.03235 0.94118 1.25026 0.99896 1.10755 1.05326 1.83262 1.16131 1.52073 1.04141 0.95075 0.90619 0.95255 0.94479 0.93561 0.91791 0.86699 0.91930 0.85698 0.91197 0.94266 0.89037 0.84042 0.84936 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.87 9.29 -48.03 -0.45 -8.32 16 3 C 0.05 1.03 6.28 37.15 0.23 1.26 16 4 C 0.12 2.77 5.44 -4.04 -0.02 2.75 16 5 N -0.43 -10.80 2.49 -118.17 -0.29 -11.10 16 6 C -0.33 -8.36 8.33 -15.05 -0.13 -8.48 16 7 H 0.09 2.14 6.88 -52.49 -0.36 1.78 16 8 C 0.04 1.04 4.98 -17.45 -0.09 0.95 16 9 N -0.86 -22.09 11.42 55.50 0.63 -21.46 16 10 Si 0.91 19.09 29.60 -169.99 -5.03 14.05 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 14 C 0.50 12.32 6.94 -15.10 -0.10 12.21 16 15 O -0.58 -15.00 11.77 -7.74 -0.09 -15.09 16 16 C -0.13 -2.89 8.79 -39.30 -0.35 -3.23 16 17 C -0.04 -0.81 5.69 -104.25 -0.59 -1.40 16 18 C -0.09 -1.71 8.42 36.00 0.30 -1.41 16 19 C -0.14 -2.28 5.55 -38.75 -0.22 -2.49 16 20 C -0.14 -2.04 10.25 -40.29 -0.41 -2.45 16 21 C -0.13 -1.72 10.14 -41.42 -0.42 -2.14 16 22 C -0.27 -3.47 10.92 29.20 0.32 -3.15 16 23 S 0.17 2.52 23.06 -107.50 -2.48 0.04 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.58 7.49 -51.93 -0.39 1.19 16 30 H 0.12 2.81 5.51 -51.93 -0.29 2.52 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.13 2.73 6.45 -52.49 -0.34 2.39 16 33 H 0.07 1.33 8.01 -51.93 -0.42 0.92 16 34 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 35 H 0.09 1.92 6.22 -51.93 -0.32 1.60 16 36 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 38 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -28.72 333.53 -8.09 -36.82 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.05 Total: 5.98 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.36 Total: -5.96 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.34 Total: -32.55 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.54 Total: -23.40 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.05 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.48 Total: 0.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.72 -8.09 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857723264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.188 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds