Wall clock time and date at job start Tue Mar 31 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00037 * 2 1 4 4 C 1.52994 * 109.47217 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47397 * 65.00169 * 4 3 2 6 6 C 1.36765 * 120.00347 * 89.99457 * 5 4 3 7 7 H 1.07999 * 120.00172 * 218.02001 * 6 5 4 8 8 C 1.39054 * 119.99976 * 38.30000 * 6 5 4 9 9 N 1.31366 * 119.99884 * 19.98936 * 8 6 5 10 10 Si 1.86794 * 119.99900 * 199.98565 * 8 6 5 11 11 H 1.48503 * 109.47398 * 60.00180 * 10 8 6 12 12 H 1.48501 * 109.47163 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47415 * 300.00011 * 10 8 6 14 14 C 1.34786 * 119.99653 * 269.99922 * 5 4 3 15 15 O 1.21843 * 119.99823 * 4.79681 * 14 5 4 16 16 C 1.41278 * 119.99851 * 184.79278 * 14 5 4 17 17 C 1.35806 * 119.99764 * 173.17440 * 16 14 5 18 18 C 1.50697 * 119.99939 * 352.70999 * 17 16 14 19 19 C 1.41502 * 119.99732 * 172.70610 * 17 16 14 20 20 C 1.37117 * 125.47496 * 115.00105 * 19 17 16 21 21 C 1.37408 * 113.21224 * 179.97438 * 20 19 17 22 22 C 1.33878 * 115.13326 * 0.02562 * 21 20 19 23 23 S 1.70606 * 111.02436 * 359.74091 * 22 21 20 24 24 H 1.09000 * 109.47530 * 60.00227 * 1 2 3 25 25 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47703 * 300.00004 * 1 2 3 27 27 H 1.08998 * 109.47272 * 59.99331 * 3 2 1 28 28 H 1.08996 * 109.46947 * 300.00096 * 3 2 1 29 29 H 1.08997 * 109.47591 * 304.99741 * 4 3 2 30 30 H 1.09004 * 109.47422 * 184.99935 * 4 3 2 31 31 H 0.96995 * 120.00049 * 184.99073 * 9 8 6 32 32 H 1.07997 * 120.00042 * 353.18101 * 16 14 5 33 33 H 1.09001 * 109.47566 * 84.18883 * 18 17 16 34 34 H 1.09002 * 109.47273 * 204.18951 * 18 17 16 35 35 H 1.09005 * 109.47428 * 324.18433 * 18 17 16 36 36 H 1.08002 * 123.39571 * 359.97438 * 20 19 17 37 37 H 1.08005 * 122.43564 * 180.02562 * 21 20 19 38 38 H 1.08009 * 124.49417 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.2675 1.3443 -2.3358 7 1 4.0004 1.0111 -3.3278 8 6 4.9124 2.5640 -2.1622 9 7 5.5851 2.8000 -1.0589 10 14 4.8221 3.8666 -3.4980 11 1 3.4037 4.2405 -3.7297 12 1 5.5875 5.0659 -3.0724 13 1 5.4037 3.3288 -4.7540 14 6 4.0959 -0.7760 -1.3331 15 8 3.7539 -1.4766 -0.3967 16 6 4.6174 -1.3682 -2.5049 17 6 4.8675 -2.7026 -2.5379 18 6 4.7460 -3.5233 -1.2798 19 6 5.2421 -3.3224 -3.7536 20 6 6.4550 -3.9097 -4.0067 21 6 6.5482 -4.4359 -5.2726 22 6 5.4558 -4.2873 -6.0320 23 16 4.2247 -3.4692 -5.1801 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 5.9739 3.6754 -0.9058 32 1 4.8173 -0.7597 -3.3745 33 1 3.7058 -3.8150 -1.1353 34 1 5.3649 -4.4162 -1.3673 35 1 5.0795 -2.9323 -0.4268 36 1 7.2563 -3.9542 -3.2840 37 1 7.4382 -4.9332 -5.6291 38 1 5.3640 -4.6427 -7.0479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857723264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:33 Heat of formation + Delta-G solvation = -33.718441 kcal Electronic energy + Delta-G solvation = -21688.271799 eV Core-core repulsion = 18430.117422 eV Total energy + Delta-G solvation = -3258.154377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78745 -39.04897 -38.47068 -36.84821 -35.35228 -33.50404 -31.38666 -29.56665 -28.58422 -27.18897 -26.64409 -25.66802 -23.76275 -21.98980 -20.73106 -19.87695 -18.64787 -18.01232 -17.38329 -17.10504 -16.96975 -16.43643 -16.11386 -15.98425 -15.66278 -15.18708 -14.72534 -14.48923 -14.10804 -13.73047 -13.52544 -13.45678 -13.35758 -13.23965 -13.06328 -12.91934 -12.69568 -12.61928 -12.54312 -12.14979 -11.98268 -11.87722 -11.74614 -11.00491 -10.49574 -10.18636 -10.00257 -9.45835 -9.39528 -9.18911 -8.25900 -6.03152 -0.28942 0.27274 1.03319 1.25694 1.46480 1.48481 1.56865 1.84372 2.32780 2.65124 3.02820 3.15482 3.29365 4.06464 4.19934 4.26514 4.29672 4.39491 4.50977 4.52104 4.57735 4.63410 4.67864 4.75147 4.80339 4.85277 4.90174 5.03525 5.14240 5.25368 5.29203 5.36961 5.44797 5.48889 5.62663 5.77568 6.07018 6.40453 6.51026 7.17057 7.68324 8.15830 8.73440 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.005605 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.505164 B = 4994.630788 C = 6215.941856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.060 3.940 4 C 0.117 3.883 5 N -0.443 5.443 6 C -0.348 4.348 7 H 0.088 0.912 8 C 0.005 3.995 9 N -0.890 5.890 10 Si 0.976 3.024 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.489 3.511 15 O -0.603 6.603 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.089 4.089 19 C -0.192 4.192 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.251 4.251 23 S 0.176 5.824 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.105 0.895 31 H 0.273 0.727 32 H 0.119 0.881 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 -8.036 -7.418 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.017 4.017 4 C -0.007 4.007 5 N -0.162 5.162 6 C -0.476 4.476 7 H 0.105 0.895 8 C -0.198 4.198 9 N -0.527 5.527 10 Si 0.800 3.200 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.191 1.191 14 C 0.283 3.717 15 O -0.492 6.492 16 C -0.203 4.203 17 C -0.003 4.003 18 C -0.146 4.146 19 C -0.310 4.310 20 C -0.152 4.152 21 C -0.173 4.173 22 C -0.388 4.388 23 S 0.446 5.554 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.168 0.832 37 H 0.183 0.817 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.932 -7.960 -7.325 11.510 hybrid contribution 1.350 0.842 0.000 1.591 sum -2.582 -7.118 -7.325 10.535 Atomic orbital electron populations 1.22841 0.80923 1.02949 1.00275 1.88138 1.20278 1.28059 1.95320 1.22906 0.94437 0.84653 0.99753 1.21379 0.91716 1.00462 0.87103 1.43404 1.56887 1.04308 1.11556 1.19589 1.37361 1.02620 0.88014 0.89488 1.26166 0.92672 1.01253 0.99733 1.70014 1.30311 1.23437 1.28989 0.85250 0.78703 0.77456 0.78597 1.19144 1.20584 1.19149 1.17384 0.82357 0.83349 0.88580 1.90643 1.54816 1.61956 1.41763 1.22103 1.03888 0.94938 0.99389 1.19353 0.94644 0.92748 0.93522 1.20827 1.01753 0.98069 0.93995 1.22422 1.00085 1.09904 0.98553 1.21092 0.96299 0.99161 0.98600 1.20177 1.00555 1.03390 0.93146 1.25491 0.98556 1.08408 1.06330 1.83276 1.16557 1.52464 1.03094 0.94162 0.89442 0.92909 0.91691 0.93935 0.94019 0.87760 0.91716 0.86312 0.91612 0.91156 0.91667 0.83194 0.81727 0.79182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.52 9.29 -136.74 -1.27 -18.79 16 3 C 0.06 2.54 6.28 71.98 0.45 2.99 16 4 C 0.12 5.84 5.44 86.38 0.47 6.31 16 5 N -0.44 -23.37 2.49 -645.92 -1.61 -24.98 16 6 C -0.35 -18.07 8.33 84.12 0.70 -17.37 16 7 H 0.09 4.40 6.88 -2.91 -0.02 4.38 16 8 C 0.00 0.24 4.98 84.96 0.42 0.67 16 9 N -0.89 -47.08 11.42 21.68 0.25 -46.83 16 10 Si 0.98 39.32 29.60 68.60 2.03 41.35 16 11 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 12 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 14 C 0.49 25.49 6.94 84.99 0.59 26.08 16 15 O -0.60 -32.78 11.77 7.43 0.09 -32.69 16 16 C -0.18 -8.20 8.79 22.45 0.20 -8.01 16 17 C 0.00 0.08 5.69 -19.63 -0.11 -0.03 16 18 C -0.09 -3.37 8.42 71.23 0.60 -2.77 16 19 C -0.19 -6.24 5.55 22.81 0.13 -6.11 16 20 C -0.12 -3.29 10.25 21.81 0.22 -3.07 16 21 C -0.14 -3.12 10.14 21.08 0.21 -2.91 16 22 C -0.25 -5.36 10.92 66.83 0.73 -4.63 16 23 S 0.18 4.78 23.06 -56.49 -1.30 3.48 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 2.19 7.49 -2.39 -0.02 2.17 16 30 H 0.10 5.35 5.51 -2.38 -0.01 5.33 16 31 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 32 H 0.12 5.46 6.45 -2.91 -0.02 5.44 16 33 H 0.07 2.55 8.01 -2.39 -0.02 2.54 16 34 H 0.07 2.17 8.06 -2.39 -0.02 2.16 16 35 H 0.06 2.84 6.22 -2.38 -0.01 2.83 16 36 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 38 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -64.31 333.53 5.11 -59.20 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 1.06 Total: 26.02 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.86 Total: -6.77 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.36 Total: -71.81 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -1.18 Total: -51.47 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.30 Total: 3.48 kcal Total: -64.31 5.11 -59.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857723264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.484 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds