Wall clock time and date at job start Tue Mar 31 2020 07:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46868 * 2 1 4 4 O 1.42892 * 109.46984 * 120.00060 * 2 1 3 5 5 C 1.53001 * 109.47056 * 240.00280 * 2 1 3 6 6 S 1.81397 * 109.47036 * 179.97438 * 5 2 1 7 7 C 1.81398 * 103.00105 * 179.97438 * 6 5 2 8 8 C 1.50697 * 109.47309 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.39232 * 119.99913 * 176.70548 * 10 8 7 12 12 C 1.39485 * 119.82970 * 217.48465 * 11 10 8 13 13 C 1.36374 * 120.16734 * 179.75401 * 12 11 10 14 14 C 1.40870 * 119.82786 * 0.51962 * 13 12 11 15 15 C 1.41152 * 120.16329 * 179.71205 * 14 13 12 16 16 H 1.08006 * 119.99731 * 157.96953 * 15 14 13 17 17 C 1.39901 * 120.00422 * 337.97274 * 15 14 13 18 18 N 1.30867 * 119.99800 * 327.61182 * 17 15 14 19 19 Si 1.86805 * 120.00044 * 147.60850 * 17 15 14 20 20 H 1.48502 * 109.46936 * 94.99091 * 19 17 15 21 21 H 1.48504 * 109.46842 * 214.98754 * 19 17 15 22 22 H 1.48496 * 109.47211 * 334.98800 * 19 17 15 23 23 C 1.40868 * 119.67517 * 359.73666 * 14 13 12 24 24 C 1.36380 * 119.82549 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47131 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47180 * 299.99938 * 1 2 3 27 27 H 1.09000 * 109.47173 * 59.99719 * 1 2 3 28 28 H 0.96704 * 114.00646 * 60.00063 * 4 2 1 29 29 H 1.08998 * 109.46842 * 299.99799 * 5 2 1 30 30 H 1.09000 * 109.47129 * 59.99975 * 5 2 1 31 31 H 1.09003 * 109.47307 * 300.00651 * 7 6 5 32 32 H 1.09006 * 109.46742 * 59.99855 * 7 6 5 33 33 H 0.97001 * 119.99899 * 356.70374 * 10 8 7 34 34 H 1.07997 * 119.91795 * 0.02562 * 12 11 10 35 35 H 1.08002 * 120.08544 * 180.25238 * 13 12 11 36 36 H 0.97002 * 120.00438 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.09405 * 179.97438 * 23 14 13 38 38 H 1.08000 * 119.91753 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 16 3.8539 -0.7205 -1.2497 7 6 4.2620 -1.6050 -2.7799 8 6 5.7594 -1.6889 -2.9276 9 8 6.4803 -1.2006 -2.0834 10 7 6.2975 -2.3066 -3.9979 11 6 7.6790 -2.3245 -4.1697 12 6 8.2207 -2.2063 -5.4497 13 6 9.5730 -2.2180 -5.6253 14 6 10.4231 -2.3608 -4.5111 15 6 11.8237 -2.3799 -4.6855 16 1 12.4741 -2.1334 -3.8592 17 6 12.3694 -2.7181 -5.9285 18 7 11.7561 -3.5792 -6.6999 19 14 13.9734 -1.9405 -6.4871 20 1 15.1050 -2.8386 -6.1432 21 1 13.9365 -1.7312 -7.9568 22 1 14.1538 -0.6336 -5.8054 23 6 9.8685 -2.4850 -3.2222 24 6 8.5143 -2.4668 -3.0617 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7210 -1.5952 1.2329 29 1 1.6767 -1.7488 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.8434 -2.6106 -2.7411 32 1 3.8427 -1.0696 -3.6318 33 1 5.7222 -2.7387 -4.6485 34 1 7.5676 -2.1009 -6.3033 35 1 9.9910 -2.1223 -6.6165 36 1 12.1342 -3.8134 -7.5619 37 1 10.5139 -2.5953 -2.3633 38 1 8.0875 -2.5623 -2.0743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882316697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:51 Heat of formation + Delta-G solvation = -70.481824 kcal Electronic energy + Delta-G solvation = -20058.102287 eV Core-core repulsion = 16798.353730 eV Total energy + Delta-G solvation = -3259.748557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58154 -37.96222 -37.23298 -34.48185 -33.09419 -32.19928 -30.45197 -29.54563 -28.57228 -27.75577 -24.81099 -22.26979 -21.71545 -20.80815 -19.74949 -17.54123 -17.34708 -16.62639 -16.44500 -16.33581 -15.56321 -15.29169 -15.21746 -14.78436 -14.02657 -13.73455 -13.58142 -13.47952 -13.14711 -12.70318 -12.49655 -12.31716 -12.15963 -12.09252 -11.91308 -11.40785 -11.36090 -11.15500 -10.96138 -10.55080 -10.46388 -10.19033 -9.92939 -9.76110 -9.49866 -9.10383 -8.72187 -7.65015 -7.56335 -7.16980 -6.90439 -4.28781 1.35468 2.46158 2.54317 2.93314 3.04409 3.08611 3.11402 3.31262 3.71353 3.88321 4.03370 4.28421 4.48142 4.62460 4.72276 4.92436 4.95333 4.96897 5.15124 5.17550 5.29248 5.59359 5.66479 5.69346 6.16677 6.41663 6.74473 6.92862 6.98558 7.12205 7.26899 7.34088 7.54776 7.65658 7.86609 8.00707 8.22776 8.25092 8.53200 8.71219 8.82590 8.97671 10.00319 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.054960 B = 0.002419 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.341282 B =11574.572555 C =11823.895493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 H 0.107 0.893 4 O -0.551 6.551 5 C -0.151 4.151 6 S -0.151 6.151 7 C -0.133 4.133 8 C 0.513 3.487 9 O -0.511 6.511 10 N -0.644 5.644 11 C -0.024 4.024 12 C -0.100 4.100 13 C -0.172 4.172 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.083 0.917 17 C 0.088 3.912 18 N -0.769 5.769 19 Si 0.896 3.104 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.064 4.064 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.374 0.626 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.394 0.606 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.571 2.182 3.836 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.061 3.939 3 H 0.125 0.875 4 O -0.356 6.356 5 C -0.300 4.300 6 S 0.075 5.925 7 C -0.285 4.285 8 C 0.297 3.703 9 O -0.387 6.387 10 N -0.288 5.288 11 C -0.116 4.116 12 C -0.121 4.121 13 C -0.192 4.192 14 C 0.110 3.890 15 C -0.491 4.491 16 H 0.101 0.899 17 C -0.134 4.134 18 N -0.392 5.392 19 Si 0.720 3.280 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.180 1.180 23 C -0.244 4.244 24 C -0.084 4.084 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.222 0.778 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.227 0.773 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.079 3.405 5.074 19.084 hybrid contribution -0.837 -1.135 -2.079 2.512 sum -18.916 2.269 2.995 19.286 Atomic orbital electron populations 1.22498 0.95500 1.02768 1.03167 1.21573 0.92676 0.96937 0.82757 0.87518 1.86677 1.77068 1.28970 1.42853 1.24420 0.98110 1.04373 1.03117 1.87922 1.01634 1.75026 1.27871 1.23557 0.98729 1.04765 1.01403 1.19550 0.88144 0.79398 0.83201 1.90743 1.61410 1.46069 1.40467 1.42807 1.06938 1.54007 1.25066 1.17023 0.80219 1.20041 0.94328 1.20155 0.95529 1.02682 0.93698 1.20618 0.91515 1.08190 0.98844 1.17604 0.93254 0.87247 0.90855 1.19522 0.92193 1.40896 0.96537 0.89938 1.25952 0.99182 0.92213 0.96057 1.69944 1.38818 1.20464 1.09950 0.86501 0.81640 0.81333 0.78565 1.19435 1.19882 1.18047 1.20609 0.93506 1.13298 0.96948 1.20313 0.93402 0.98254 0.96420 0.92149 0.91188 0.91374 0.77840 0.90072 0.89373 0.87782 0.87770 0.77257 0.89290 0.87448 0.90582 0.88650 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 9.53 37.16 0.35 -0.60 16 2 C 0.12 0.96 3.64 -26.73 -0.10 0.86 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 4 O -0.55 -5.31 12.93 -35.23 -0.46 -5.77 16 5 C -0.15 -1.23 5.64 37.16 0.21 -1.02 16 6 S -0.15 -2.01 20.52 -107.50 -2.21 -4.22 16 7 C -0.13 -1.61 6.42 36.00 0.23 -1.38 16 8 C 0.51 9.02 7.66 -10.98 -0.08 8.93 16 9 O -0.51 -11.38 13.48 5.56 0.07 -11.30 16 10 N -0.64 -11.33 5.30 -9.74 -0.05 -11.38 16 11 C -0.02 -0.54 6.25 -83.57 -0.52 -1.06 16 12 C -0.10 -2.30 9.90 -39.79 -0.39 -2.69 16 13 C -0.17 -4.40 8.74 -39.26 -0.34 -4.75 16 14 C 0.11 3.05 5.57 -106.80 -0.60 2.45 16 15 C -0.46 -12.31 8.94 -37.85 -0.34 -12.64 16 16 H 0.08 2.12 8.02 -52.48 -0.42 1.70 16 17 C 0.09 2.17 4.77 -17.34 -0.08 2.08 16 18 N -0.77 -19.36 11.78 55.55 0.65 -18.70 16 19 Si 0.90 18.22 29.66 -169.99 -5.04 13.17 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 C -0.22 -5.78 9.74 -39.26 -0.38 -6.16 16 24 C -0.06 -1.57 8.59 -39.79 -0.34 -1.91 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.37 2.26 9.05 45.56 0.41 2.67 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.39 5.31 8.82 -40.82 -0.36 4.95 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.11 2.78 6.52 -52.49 -0.34 2.43 16 36 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 37 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 38 H 0.10 2.50 6.45 -52.49 -0.34 2.17 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -32.19 338.79 -8.72 -40.91 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.41 Total: 10.06 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.39 Total: -17.89 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.60 Total: -30.08 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.38 Total: -17.07 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.04 Total: 13.17 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.21 Total: -4.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.19 -8.72 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882316697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.573 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds