Wall clock time and date at job start Tue Mar 31 2020 07:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46868 * 2 1 4 4 O 1.42892 * 109.46984 * 120.00060 * 2 1 3 5 5 C 1.53001 * 109.47056 * 240.00280 * 2 1 3 6 6 S 1.81397 * 109.47036 * 179.97438 * 5 2 1 7 7 C 1.81398 * 103.00105 * 179.97438 * 6 5 2 8 8 C 1.50697 * 109.47309 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00051 * 180.02562 * 8 7 6 11 11 C 1.39232 * 119.99913 * 176.70548 * 10 8 7 12 12 C 1.39485 * 119.82970 * 217.48465 * 11 10 8 13 13 C 1.36374 * 120.16734 * 179.75401 * 12 11 10 14 14 C 1.40870 * 119.82786 * 0.51962 * 13 12 11 15 15 C 1.41152 * 120.16329 * 179.71205 * 14 13 12 16 16 H 1.08006 * 119.99731 * 157.96953 * 15 14 13 17 17 C 1.39901 * 120.00422 * 337.97274 * 15 14 13 18 18 N 1.30867 * 119.99800 * 327.61182 * 17 15 14 19 19 Si 1.86805 * 120.00044 * 147.60850 * 17 15 14 20 20 H 1.48502 * 109.46936 * 94.99091 * 19 17 15 21 21 H 1.48504 * 109.46842 * 214.98754 * 19 17 15 22 22 H 1.48496 * 109.47211 * 334.98800 * 19 17 15 23 23 C 1.40868 * 119.67517 * 359.73666 * 14 13 12 24 24 C 1.36380 * 119.82549 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47131 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47180 * 299.99938 * 1 2 3 27 27 H 1.09000 * 109.47173 * 59.99719 * 1 2 3 28 28 H 0.96704 * 114.00646 * 60.00063 * 4 2 1 29 29 H 1.08998 * 109.46842 * 299.99799 * 5 2 1 30 30 H 1.09000 * 109.47129 * 59.99975 * 5 2 1 31 31 H 1.09003 * 109.47307 * 300.00651 * 7 6 5 32 32 H 1.09006 * 109.46742 * 59.99855 * 7 6 5 33 33 H 0.97001 * 119.99899 * 356.70374 * 10 8 7 34 34 H 1.07997 * 119.91795 * 0.02562 * 12 11 10 35 35 H 1.08002 * 120.08544 * 180.25238 * 13 12 11 36 36 H 0.97002 * 120.00438 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.09405 * 179.97438 * 23 14 13 38 38 H 1.08000 * 119.91753 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2493 6 16 3.8539 -0.7205 -1.2497 7 6 4.2620 -1.6050 -2.7799 8 6 5.7594 -1.6889 -2.9276 9 8 6.4803 -1.2006 -2.0834 10 7 6.2975 -2.3066 -3.9979 11 6 7.6790 -2.3245 -4.1697 12 6 8.2207 -2.2063 -5.4497 13 6 9.5730 -2.2180 -5.6253 14 6 10.4231 -2.3608 -4.5111 15 6 11.8237 -2.3799 -4.6855 16 1 12.4741 -2.1334 -3.8592 17 6 12.3694 -2.7181 -5.9285 18 7 11.7561 -3.5792 -6.6999 19 14 13.9734 -1.9405 -6.4871 20 1 15.1050 -2.8386 -6.1432 21 1 13.9365 -1.7312 -7.9568 22 1 14.1538 -0.6336 -5.8054 23 6 9.8685 -2.4850 -3.2222 24 6 8.5143 -2.4668 -3.0617 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7210 -1.5952 1.2329 29 1 1.6767 -1.7488 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.8434 -2.6106 -2.7411 32 1 3.8427 -1.0696 -3.6318 33 1 5.7222 -2.7387 -4.6485 34 1 7.5676 -2.1009 -6.3033 35 1 9.9910 -2.1223 -6.6165 36 1 12.1342 -3.8134 -7.5619 37 1 10.5139 -2.5953 -2.3633 38 1 8.0875 -2.5623 -2.0743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882316697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:51 Heat of formation + Delta-G solvation = -92.890534 kcal Electronic energy + Delta-G solvation = -20059.074001 eV Core-core repulsion = 16798.353730 eV Total energy + Delta-G solvation = -3260.720272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14166 -39.05600 -38.57953 -36.21807 -34.84730 -32.81440 -31.86440 -31.44291 -30.16769 -28.31498 -26.62317 -23.59283 -22.89225 -22.54189 -21.32150 -19.33712 -18.69484 -17.97815 -17.63496 -17.06064 -17.00143 -16.57574 -16.40317 -15.80392 -15.47610 -15.25856 -14.98067 -14.51879 -14.21198 -14.13736 -13.97181 -13.80542 -13.48333 -13.20517 -12.92505 -12.82693 -12.70485 -12.65542 -12.33499 -11.94756 -11.91474 -11.60708 -11.18994 -11.08938 -10.83417 -10.76607 -10.50394 -9.50298 -9.04341 -8.75648 -8.62654 -6.25395 0.45837 0.80308 1.11500 1.36258 1.41407 1.53880 1.64154 1.74548 2.19161 2.35732 2.62611 3.49934 3.65989 3.70643 3.81532 4.06744 4.09235 4.22216 4.25863 4.37409 4.47067 4.49205 4.61649 4.88165 4.88500 5.08624 5.12006 5.13715 5.25764 5.27576 5.41830 5.61980 5.84708 6.00019 6.06842 6.33572 6.58879 6.68159 6.86396 6.87085 6.96703 7.37119 8.18772 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.054960 B = 0.002419 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.341282 B =11574.572555 C =11823.895493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 H 0.089 0.911 4 O -0.577 6.577 5 C -0.123 4.123 6 S -0.244 6.244 7 C -0.108 4.108 8 C 0.508 3.492 9 O -0.563 6.563 10 N -0.636 5.636 11 C -0.009 4.009 12 C -0.097 4.097 13 C -0.190 4.190 14 C 0.084 3.916 15 C -0.504 4.504 16 H 0.074 0.926 17 C 0.052 3.948 18 N -0.796 5.796 19 Si 0.972 3.028 20 H -0.259 1.259 21 H -0.259 1.259 22 H -0.263 1.263 23 C -0.248 4.248 24 C -0.076 4.076 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.388 0.612 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.418 0.582 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.295 0.705 37 H 0.090 0.910 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.137 2.043 2.185 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.107 0.893 4 O -0.384 6.384 5 C -0.271 4.271 6 S -0.018 6.018 7 C -0.258 4.258 8 C 0.296 3.704 9 O -0.441 6.441 10 N -0.282 5.282 11 C -0.102 4.102 12 C -0.117 4.117 13 C -0.210 4.210 14 C 0.081 3.919 15 C -0.532 4.532 16 H 0.092 0.908 17 C -0.168 4.168 18 N -0.420 5.420 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.183 1.183 22 H -0.187 1.187 23 C -0.268 4.268 24 C -0.096 4.096 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.237 0.763 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.256 0.744 34 H 0.145 0.855 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.699 3.233 3.403 21.224 hybrid contribution -0.227 -1.106 -1.474 1.856 sum -20.925 2.128 1.930 21.122 Atomic orbital electron populations 1.22404 0.92986 1.03885 1.03660 1.21650 0.94372 0.96003 0.82286 0.89255 1.86642 1.77782 1.30248 1.43777 1.24426 0.92714 1.06105 1.03897 1.88325 1.07894 1.75868 1.29734 1.23393 0.93993 1.06975 1.01454 1.20496 0.90534 0.77684 0.81719 1.90737 1.63359 1.47857 1.42154 1.42703 1.05130 1.54411 1.26005 1.17079 0.82584 1.17131 0.93455 1.20451 0.95032 1.01155 0.95082 1.20666 0.92775 1.09469 0.98096 1.17916 0.94082 0.88307 0.91581 1.19709 0.92368 1.43240 0.97865 0.90807 1.26728 1.02772 0.91946 0.95331 1.69932 1.40606 1.20837 1.10602 0.85365 0.77095 0.79820 0.78526 1.18386 1.18294 1.18675 1.20727 0.94384 1.14776 0.96869 1.20404 0.93254 0.98823 0.97135 0.90692 0.91532 0.90072 0.76281 0.87764 0.87300 0.84274 0.84377 0.74400 0.85541 0.88174 0.89385 0.89194 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.53 71.98 0.69 -0.62 16 2 C 0.12 1.63 3.64 30.59 0.11 1.74 16 3 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 4 O -0.58 -10.57 12.93 -148.98 -1.93 -12.50 16 5 C -0.12 -1.60 5.64 71.98 0.41 -1.19 16 6 S -0.24 -6.18 20.52 -56.49 -1.16 -7.33 16 7 C -0.11 -2.24 6.42 71.23 0.46 -1.78 16 8 C 0.51 17.02 7.66 87.66 0.67 17.69 16 9 O -0.56 -25.21 13.48 -3.02 -0.04 -25.26 16 10 N -0.64 -20.88 5.30 -303.11 -1.61 -22.49 16 11 C -0.01 -0.41 6.25 38.57 0.24 -0.16 16 12 C -0.10 -4.35 9.90 22.14 0.22 -4.13 16 13 C -0.19 -9.89 8.74 22.48 0.20 -9.70 16 14 C 0.08 4.70 5.57 -21.28 -0.12 4.58 16 15 C -0.50 -27.89 8.94 23.39 0.21 -27.68 16 16 H 0.07 4.03 8.02 -2.91 -0.02 4.01 16 17 C 0.05 2.60 4.77 85.24 0.41 3.01 16 18 N -0.80 -40.45 11.78 21.82 0.26 -40.19 16 19 Si 0.97 37.61 29.66 68.60 2.03 39.64 16 20 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 23 C -0.25 -13.45 9.74 22.48 0.22 -13.23 16 24 C -0.08 -3.83 8.59 22.14 0.19 -3.64 16 25 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.39 4.14 9.05 -74.05 -0.67 3.47 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.42 9.68 8.82 -92.71 -0.82 8.87 16 34 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.10 5.26 6.52 -2.91 -0.02 5.24 16 36 H 0.30 13.23 8.30 -92.71 -0.77 12.46 16 37 H 0.09 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.10 4.97 6.45 -2.91 -0.02 4.95 16 Total: -1.00 -74.37 338.79 1.06 -73.31 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.40 Total: 29.92 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 3.90 Total: -35.11 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -1.35 Total: -62.68 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.97 Total: -37.75 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: -6.18 SS G_CDS: -1.16 Total: -7.33 kcal Total: -74.37 1.06 -73.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882316697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.576 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds