Wall clock time and date at job start Tue Mar 31 2020 07:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 O 1.42910 * 109.47182 * 239.99928 * 2 1 3 5 5 C 1.53001 * 109.47247 * 120.00115 * 2 1 3 6 6 S 1.81408 * 109.47067 * 185.00051 * 5 2 1 7 7 C 1.81399 * 102.99969 * 179.97438 * 6 5 2 8 8 C 1.50693 * 109.47309 * 179.97438 * 7 6 5 9 9 O 1.21285 * 120.00006 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00510 * 180.02562 * 8 7 6 11 11 C 1.39230 * 120.00300 * 175.71168 * 10 8 7 12 12 C 1.39487 * 119.83192 * 215.00929 * 11 10 8 13 13 C 1.36376 * 120.16538 * 179.75875 * 12 11 10 14 14 C 1.40867 * 119.83176 * 0.51366 * 13 12 11 15 15 C 1.41152 * 120.16487 * 179.72099 * 14 13 12 16 16 H 1.08003 * 119.99530 * 214.80797 * 15 14 13 17 17 C 1.39897 * 120.00056 * 34.80221 * 15 14 13 18 18 N 1.30872 * 120.00429 * 355.56229 * 17 15 14 19 19 Si 1.86807 * 119.99916 * 175.56161 * 17 15 14 20 20 H 1.48496 * 109.47042 * 60.00379 * 19 17 15 21 21 H 1.48503 * 109.46986 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47164 * 300.00026 * 19 17 15 23 23 C 1.40867 * 119.67170 * 359.74122 * 14 13 12 24 24 C 1.36381 * 119.82752 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.46893 * 300.00178 * 1 2 3 26 26 H 1.09003 * 109.46789 * 60.00155 * 1 2 3 27 27 H 1.08997 * 109.46769 * 180.02562 * 1 2 3 28 28 H 0.96707 * 113.99554 * 59.99944 * 4 2 1 29 29 H 1.09000 * 109.47267 * 65.00324 * 5 2 1 30 30 H 1.08996 * 109.46802 * 304.99690 * 5 2 1 31 31 H 1.09008 * 109.46924 * 59.99871 * 7 6 5 32 32 H 1.08995 * 109.46970 * 299.99937 * 7 6 5 33 33 H 0.96998 * 119.99583 * 355.70104 * 10 8 7 34 34 H 1.07997 * 119.91202 * 0.02562 * 12 11 10 35 35 H 1.08007 * 120.08147 * 180.25904 * 13 12 11 36 36 H 0.96996 * 120.00140 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.08791 * 179.97438 * 23 14 13 38 38 H 1.07997 * 119.91237 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 16 3.8480 -0.5932 1.3256 7 6 4.2568 -1.4916 2.8475 8 6 5.7493 -1.4756 3.0549 9 8 6.4667 -0.9138 2.2545 10 7 6.2871 -2.0864 4.1292 11 6 7.6703 -2.1489 4.2746 12 6 8.2571 -3.2745 4.8530 13 6 9.6116 -3.3451 4.9942 14 6 10.4178 -2.2730 4.5642 15 6 11.8201 -2.3361 4.7123 16 1 12.3806 -1.4398 4.9337 17 6 12.4839 -3.5596 4.5726 18 7 11.7980 -4.6592 4.3909 19 14 14.3495 -3.6237 4.6453 20 1 14.8114 -3.1133 5.9610 21 1 14.8037 -5.0268 4.4709 22 1 14.9163 -2.7821 3.5611 23 6 9.8176 -1.1373 3.9859 24 6 8.4620 -1.0832 3.8469 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.7210 -0.2701 -1.9980 29 1 1.7518 -1.7715 1.2056 30 1 1.6055 -0.2617 2.1369 31 1 3.9129 -2.5227 2.7643 32 1 3.7667 -1.0125 3.6950 33 1 5.7104 -2.4822 4.8012 34 1 7.6373 -4.0939 5.1859 35 1 10.0648 -4.2190 5.4385 36 1 12.2583 -5.5075 4.2936 37 1 10.4292 -0.3114 3.6542 38 1 8.0003 -0.2131 3.4041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882319804.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:54 Heat of formation + Delta-G solvation = -66.494522 kcal Electronic energy + Delta-G solvation = -20069.558889 eV Core-core repulsion = 16809.983235 eV Total energy + Delta-G solvation = -3259.575655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62768 -37.85090 -37.23267 -34.44557 -32.96501 -32.37555 -30.41067 -29.53944 -28.44656 -27.74872 -24.79703 -22.04130 -21.60005 -20.82004 -19.68609 -17.78953 -17.38784 -17.11887 -16.44282 -16.11377 -15.38517 -15.24870 -15.09028 -14.39346 -13.96972 -13.68689 -13.59721 -13.41364 -13.00884 -12.80190 -12.64488 -12.44516 -12.12677 -12.08461 -11.68669 -11.37651 -11.21267 -11.11351 -10.99337 -10.72022 -10.42354 -10.04881 -9.87974 -9.49607 -9.45072 -9.15536 -8.88522 -7.59159 -7.54084 -6.86424 -6.60837 -4.33554 1.39483 2.49471 2.53341 3.01957 3.09541 3.10770 3.13189 3.31735 3.69244 3.84061 3.99144 4.40209 4.68118 4.70413 4.73897 4.96155 4.96693 4.99286 5.18009 5.18723 5.42385 5.46888 5.66225 5.69004 6.19155 6.45412 6.74265 6.91067 7.07257 7.20420 7.30068 7.34968 7.64411 7.72936 7.86116 8.06547 8.23793 8.32076 8.61722 8.71223 8.93540 9.00233 10.30245 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.043764 B = 0.002461 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.647969 B =11376.702397 C =11547.463082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.119 3.881 3 H 0.065 0.935 4 O -0.556 6.556 5 C -0.109 4.109 6 S -0.157 6.157 7 C -0.131 4.131 8 C 0.514 3.486 9 O -0.509 6.509 10 N -0.647 5.647 11 C 0.002 3.998 12 C -0.119 4.119 13 C -0.142 4.142 14 C 0.100 3.900 15 C -0.460 4.460 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.812 5.812 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.205 4.205 24 C -0.084 4.084 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.378 0.622 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.396 0.604 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.278 0.722 37 H 0.097 0.903 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.217 4.644 -3.074 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.059 3.941 3 H 0.083 0.917 4 O -0.362 6.362 5 C -0.258 4.258 6 S 0.069 5.931 7 C -0.283 4.283 8 C 0.299 3.701 9 O -0.384 6.384 10 N -0.291 5.291 11 C -0.090 4.090 12 C -0.140 4.140 13 C -0.162 4.162 14 C 0.098 3.902 15 C -0.491 4.491 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.439 5.439 19 Si 0.741 3.259 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.225 4.225 24 C -0.104 4.104 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.225 0.775 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.150 0.850 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.699 4.889 -3.941 19.725 hybrid contribution -0.728 -0.742 0.823 1.326 sum -19.427 4.147 -3.118 20.107 Atomic orbital electron populations 1.22506 0.95594 1.03099 1.02832 1.21360 0.92497 0.95320 0.84935 0.91702 1.86655 1.76903 1.57057 1.15538 1.23565 0.97588 1.04683 0.99916 1.87792 1.02926 1.72365 1.30024 1.23540 0.98572 1.05013 1.01146 1.19571 0.88201 0.80543 0.81833 1.90741 1.61357 1.42482 1.43829 1.42862 1.06768 1.56864 1.22607 1.17249 0.80407 0.97353 1.13992 1.20308 0.95767 0.94713 1.03185 1.21193 0.90852 1.01283 1.02867 1.17731 0.93504 0.90874 0.88111 1.19467 0.92229 0.94417 1.43006 0.90613 1.25887 1.00962 0.95065 0.92678 1.69750 1.37514 0.99324 1.37299 0.86238 0.82023 0.77887 0.79721 1.19060 1.20442 1.19076 1.20814 0.93537 1.00988 1.07181 1.20405 0.93796 0.96471 0.99755 0.91370 0.91783 0.91582 0.77522 0.89509 0.89001 0.87545 0.87742 0.77066 0.89076 0.84990 0.91074 0.88524 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 9.53 37.16 0.35 -0.63 16 2 C 0.12 0.97 3.57 -26.73 -0.10 0.88 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 O -0.56 -5.41 13.07 -35.23 -0.46 -5.87 16 5 C -0.11 -1.01 5.63 37.16 0.21 -0.80 16 6 S -0.16 -2.21 20.66 -107.50 -2.22 -4.43 16 7 C -0.13 -1.64 6.43 36.00 0.23 -1.41 16 8 C 0.51 9.16 7.68 -10.99 -0.08 9.07 16 9 O -0.51 -11.44 13.29 5.55 0.07 -11.36 16 10 N -0.65 -11.36 5.30 -9.74 -0.05 -11.41 16 11 C 0.00 0.05 6.30 -83.57 -0.53 -0.48 16 12 C -0.12 -2.74 9.90 -39.79 -0.39 -3.14 16 13 C -0.14 -3.68 8.62 -39.26 -0.34 -4.02 16 14 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 15 C -0.46 -12.40 9.02 -37.86 -0.34 -12.75 16 16 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 17 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 18 N -0.81 -21.32 10.60 55.55 0.59 -20.73 16 19 Si 0.92 19.20 29.56 -169.99 -5.03 14.17 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 24 C -0.08 -2.06 8.61 -39.79 -0.34 -2.40 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.38 1.99 9.08 45.56 0.41 2.40 16 29 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.11 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 5.25 8.82 -40.82 -0.36 4.89 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.13 3.52 6.13 -52.48 -0.32 3.20 16 36 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 37 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.11 2.61 6.22 -52.49 -0.33 2.28 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -33.15 337.46 -8.78 -41.92 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.37 Total: 10.16 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.40 Total: -17.55 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.54 Total: -32.14 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.39 Total: -17.23 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -2.22 Total: -4.43 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.15 -8.78 -41.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882319804.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.571 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds